Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 PRKACB-213ENST00000446538 1112 ntTSL 2 BASIC5.15□□□□□ -1.59
VPS28Q9UK41 TCEA1P1-201ENST00000449716 880 ntBASIC5.15□□□□□ -1.59
VPS28Q9UK41 AC011196.1-201ENST00000451816 595 ntTSL 2 BASIC5.15□□□□□ -1.59
VPS28Q9UK41 LINC01767-201ENST00000451914 545 ntTSL 2 BASIC5.15□□□□□ -1.59
VPS28Q9UK41 OR5H3P-201ENST00000502817 919 ntBASIC5.15□□□□□ -1.59
VPS28Q9UK41 AC011389.1-201ENST00000509170 594 ntTSL 4 BASIC5.15□□□□□ -1.59
VPS28Q9UK41 AC027031.1-201ENST00000517318 489 ntTSL 3 BASIC5.15□□□□□ -1.59
VPS28Q9UK41 AP001922.4-201ENST00000526967 290 ntBASIC5.15□□□□□ -1.59
VPS28Q9UK41 OR5AZ1P-201ENST00000527448 943 ntBASIC5.15□□□□□ -1.59
VPS28Q9UK41 LINC02553-201ENST00000529088 734 ntTSL 5 BASIC5.15□□□□□ -1.59
VPS28Q9UK41 AC016987.1-201ENST00000558587 499 ntTSL 2 BASIC5.15□□□□□ -1.59
VPS28Q9UK41 AC078909.1-201ENST00000559509 464 ntTSL 2 BASIC5.15□□□□□ -1.59
VPS28Q9UK41 LINC02137-203ENST00000567448 930 ntTSL 5 BASIC5.15□□□□□ -1.59
VPS28Q9UK41 AC090079.2-201ENST00000575289 768 ntBASIC5.15□□□□□ -1.59
VPS28Q9UK41 AC011840.5-201ENST00000582125 771 ntBASIC5.15□□□□□ -1.59
VPS28Q9UK41 AC115085.1-201ENST00000588924 229 ntBASIC5.15□□□□□ -1.59
VPS28Q9UK41 AC011487.3-201ENST00000593607 453 ntBASIC5.15□□□□□ -1.59
VPS28Q9UK41 AC024940.4-201ENST00000605507 246 ntBASIC5.15□□□□□ -1.59
VPS28Q9UK41 AC026741.1-201ENST00000605892 482 ntBASIC5.15□□□□□ -1.59
VPS28Q9UK41 AC006946.3-201ENST00000609791 756 ntBASIC5.15□□□□□ -1.59
VPS28Q9UK41 AC100847.1-201ENST00000611316 481 ntBASIC5.15□□□□□ -1.59
VPS28Q9UK41 STATH-208ENST00000615994 598 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
VPS28Q9UK41 AC108359.1-201ENST00000616451 1211 ntBASIC5.15□□□□□ -1.59
VPS28Q9UK41 KLRF1-208ENST00000617889 1241 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
VPS28Q9UK41 AC015914.2-201ENST00000618167 288 ntBASIC5.15□□□□□ -1.59
VPS28Q9UK41 AP002371.2-201ENST00000624450 503 ntBASIC5.15□□□□□ -1.59
VPS28Q9UK41 CR392039.4-201ENST00000624968 501 ntBASIC5.15□□□□□ -1.59
VPS28Q9UK41 FGF12-204ENST00000445105 5406 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
VPS28Q9UK41 AC011447.7-201ENST00000624228 1590 ntBASIC5.15□□□□□ -1.59
VPS28Q9UK41 AC007681.1-201ENST00000604271 3438 ntTSL 4 BASIC5.15□□□□□ -1.59
VPS28Q9UK41 ERMN-201ENST00000397283 3760 ntTSL 2 BASIC5.15□□□□□ -1.59
VPS28Q9UK41 CYP7A1-201ENST00000301645 2950 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
VPS28Q9UK41 TEX11-201ENST00000344304 2977 ntAPPRIS P3 TSL 5 BASIC5.15□□□□□ -1.59
VPS28Q9UK41 CXCL11-201ENST00000306621 1606 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
VPS28Q9UK41 ZBTB44-210ENST00000530205 2179 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
VPS28Q9UK41 IPO11-203ENST00000409534 1725 ntTSL 2 BASIC5.14□□□□□ -1.59
VPS28Q9UK41 C9orf153-204ENST00000613665 1738 ntAPPRIS P2 TSL 2 BASIC5.14□□□□□ -1.59
VPS28Q9UK41 ASB14-202ENST00000487349 3179 ntAPPRIS P2 TSL 1 (best) BASIC5.14□□□□□ -1.59
VPS28Q9UK41 PSG1-204ENST00000436291 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC5.14□□□□□ -1.59
VPS28Q9UK41 AC093535.2-201ENST00000624769 2326 ntBASIC5.14□□□□□ -1.59
VPS28Q9UK41 CNTN5-201ENST00000279463 5925 ntTSL 5 BASIC5.14□□□□□ -1.59
VPS28Q9UK41 LRRC77P-206ENST00000481578 2350 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
VPS28Q9UK41 C6-202ENST00000337836 3551 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
VPS28Q9UK41 FGF13-202ENST00000315930 19519 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
VPS28Q9UK41 R3HCC1L-202ENST00000314594 3198 ntAPPRIS P1 TSL 5 BASIC5.14□□□□□ -1.59
VPS28Q9UK41 RNA5SP27-201ENST00000363839 119 ntBASIC5.14□□□□□ -1.59
VPS28Q9UK41 RN7SKP224-201ENST00000364140 325 ntBASIC5.14□□□□□ -1.59
VPS28Q9UK41 SNORA51.8-201ENST00000384234 132 ntBASIC5.14□□□□□ -1.59
VPS28Q9UK41 SNORA70.10-201ENST00000384515 134 ntBASIC5.14□□□□□ -1.59
VPS28Q9UK41 AL021331.1-201ENST00000402817 582 ntBASIC5.14□□□□□ -1.59
VPS28Q9UK41 AP002530.1-201ENST00000405705 684 ntBASIC5.14□□□□□ -1.59
VPS28Q9UK41 MIR1271-201ENST00000408537 86 ntBASIC5.14□□□□□ -1.59
VPS28Q9UK41 BX664727.1-201ENST00000416024 466 ntBASIC5.14□□□□□ -1.59
VPS28Q9UK41 LINC01507-201ENST00000417801 446 ntTSL 5 BASIC5.14□□□□□ -1.59
VPS28Q9UK41 AL391704.2-201ENST00000418379 981 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
VPS28Q9UK41 AC019050.1-201ENST00000418508 492 ntBASIC5.14□□□□□ -1.59
VPS28Q9UK41 AL512637.2-201ENST00000431287 1256 ntBASIC5.14□□□□□ -1.59
VPS28Q9UK41 RPL7L1P1-201ENST00000448259 785 ntBASIC5.14□□□□□ -1.59
VPS28Q9UK41 HIGD1AP8-201ENST00000453927 274 ntBASIC5.14□□□□□ -1.59
VPS28Q9UK41 RNA5SP103-201ENST00000459503 118 ntBASIC5.14□□□□□ -1.59
VPS28Q9UK41 AC008379.1-201ENST00000463655 464 ntBASIC5.14□□□□□ -1.59
VPS28Q9UK41 SSR3-206ENST00000476217 807 ntTSL 3 BASIC5.14□□□□□ -1.59
VPS28Q9UK41 AC005412.2-201ENST00000492004 341 ntBASIC5.14□□□□□ -1.59
VPS28Q9UK41 AC138938.1-201ENST00000515431 782 ntBASIC5.14□□□□□ -1.59
VPS28Q9UK41 C1DP5-201ENST00000525775 383 ntBASIC5.14□□□□□ -1.59
VPS28Q9UK41 LINC00944-202ENST00000540684 888 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
VPS28Q9UK41 BNIP3P1-201ENST00000547295 580 ntBASIC5.14□□□□□ -1.59
VPS28Q9UK41 AC009554.1-201ENST00000559251 399 ntTSL 5 BASIC5.14□□□□□ -1.59
VPS28Q9UK41 LINS1-207ENST00000560133 1196 ntTSL 2 BASIC5.14□□□□□ -1.59
VPS28Q9UK41 NDUFB4P11-201ENST00000560510 395 ntBASIC5.14□□□□□ -1.59
VPS28Q9UK41 AC092134.1-201ENST00000563690 800 ntTSL 3 BASIC5.14□□□□□ -1.59
VPS28Q9UK41 AC027104.1-201ENST00000563702 681 ntBASIC5.14□□□□□ -1.59
VPS28Q9UK41 AC007496.1-201ENST00000565641 739 ntTSL 3 BASIC5.14□□□□□ -1.59
VPS28Q9UK41 MTND4LP24-201ENST00000572277 291 ntBASIC5.14□□□□□ -1.59
VPS28Q9UK41 AC124283.4-201ENST00000581815 456 ntBASIC5.14□□□□□ -1.59
VPS28Q9UK41 MYLK-221ENST00000583087 678 ntTSL 4 BASIC5.14□□□□□ -1.59
VPS28Q9UK41 L34079.2-201ENST00000597119 561 ntTSL 3 BASIC5.14□□□□□ -1.59
VPS28Q9UK41 AC112503.2-201ENST00000609005 552 ntBASIC5.14□□□□□ -1.59
VPS28Q9UK41 AC123768.4-201ENST00000616244 701 ntBASIC5.14□□□□□ -1.59
VPS28Q9UK41 AC112694.2-201ENST00000623697 768 ntBASIC5.14□□□□□ -1.59
VPS28Q9UK41 U6.107-201ENST00000637108 79 ntBASIC5.14□□□□□ -1.59
VPS28Q9UK41 LCMT1-AS2-202ENST00000565214 5666 ntBASIC5.14□□□□□ -1.59
VPS28Q9UK41 PEAK1-204ENST00000560626 19217 ntAPPRIS P1 TSL 5 BASIC5.14□□□□□ -1.59
VPS28Q9UK41 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
VPS28Q9UK41 RLIM-201ENST00000332687 8317 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
VPS28Q9UK41 CLVS1-205ENST00000519846 3622 ntAPPRIS P1 TSL 5 BASIC5.14□□□□□ -1.59
VPS28Q9UK41 UGT2A1-203ENST00000503640 2595 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
VPS28Q9UK41 OBSCN-214ENST00000636875 23907 ntTSL 5 BASIC5.13□□□□□ -1.59
VPS28Q9UK41 FZD6-205ENST00000522566 3719 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
VPS28Q9UK41 ATP7A-202ENST00000343533 8289 ntTSL 5 BASIC5.13□□□□□ -1.59
VPS28Q9UK41 GABRG2-202ENST00000361925 3767 ntTSL 3 BASIC5.13□□□□□ -1.59
VPS28Q9UK41 AL158835.1-203ENST00000415305 3149 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
VPS28Q9UK41 ADAM18-201ENST00000265707 2388 ntAPPRIS P3 TSL 1 (best) BASIC5.13□□□□□ -1.59
VPS28Q9UK41 HERC1-201ENST00000443617 15137 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
VPS28Q9UK41 AC008079.2-201ENST00000623543 20396 ntBASIC5.13□□□□□ -1.59
VPS28Q9UK41 AC011155.1-201ENST00000316512 456 ntBASIC5.13□□□□□ -1.59
VPS28Q9UK41 MT-CO3-201ENST00000362079 784 ntAPPRIS P1 BASIC5.13□□□□□ -1.59
VPS28Q9UK41 SNORA63.3-201ENST00000362682 132 ntBASIC5.13□□□□□ -1.59
VPS28Q9UK41 RN7SKP95-201ENST00000362860 303 ntBASIC5.13□□□□□ -1.59
VPS28Q9UK41 RNU6-481P-201ENST00000384194 107 ntBASIC5.13□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 101.3 ms