Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 AC012103.1-201ENST00000522281 780 ntTSL 3 BASIC4.59□□□□□ -1.67
LHX3Q9UBR4 ATF7IP-209ENST00000536444 8774 ntAPPRIS ALT2 TSL 1 (best) BASIC4.59□□□□□ -1.67
LHX3Q9UBR4 AC008250.1-201ENST00000539874 522 ntTSL 3 BASIC4.59□□□□□ -1.67
LHX3Q9UBR4 AC079328.3-201ENST00000558905 691 ntTSL 3 BASIC4.59□□□□□ -1.67
LHX3Q9UBR4 AC023932.1-201ENST00000582726 429 ntTSL 3 BASIC4.59□□□□□ -1.67
LHX3Q9UBR4 MIR5096-201ENST00000583713 70 ntBASIC4.59□□□□□ -1.67
LHX3Q9UBR4 ZNF540-204ENST00000586792 564 ntTSL 3 BASIC4.59□□□□□ -1.67
LHX3Q9UBR4 ADAD1P2-201ENST00000588476 646 ntBASIC4.59□□□□□ -1.67
LHX3Q9UBR4 AC090181.2-201ENST00000602975 672 ntBASIC4.59□□□□□ -1.67
LHX3Q9UBR4 RNF138P2-201ENST00000603490 592 ntBASIC4.59□□□□□ -1.67
LHX3Q9UBR4 AC017002.4-201ENST00000604721 1525 ntBASIC4.59□□□□□ -1.67
LHX3Q9UBR4 AC019193.2-201ENST00000610012 634 ntBASIC4.59□□□□□ -1.67
LHX3Q9UBR4 ZNF630-AS1-201ENST00000614448 397 ntTSL 3 BASIC4.59□□□□□ -1.67
LHX3Q9UBR4 AL731566.1-201ENST00000620490 1937 ntBASIC4.59□□□□□ -1.67
LHX3Q9UBR4 AC145207.9-201ENST00000623802 325 ntBASIC4.59□□□□□ -1.67
LHX3Q9UBR4 LINC00862-204ENST00000637098 1400 ntTSL 5 BASIC4.59□□□□□ -1.67
LHX3Q9UBR4 OR8H2-203ENST00000641311 3092 ntAPPRIS P2 BASIC4.59□□□□□ -1.67
LHX3Q9UBR4 PIK3CB-214ENST00000544716 3181 ntTSL 1 (best) BASIC4.59□□□□□ -1.68
LHX3Q9UBR4 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC4.59□□□□□ -1.68
LHX3Q9UBR4 SNCA-213ENST00000618500 3022 ntTSL 1 (best) BASIC4.59□□□□□ -1.68
LHX3Q9UBR4 CCNT2-201ENST00000264157 6917 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
LHX3Q9UBR4 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
LHX3Q9UBR4 CASC19-284ENST00000642142 1868 ntBASIC4.58□□□□□ -1.68
LHX3Q9UBR4 CDKL3-210ENST00000523832 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC4.58□□□□□ -1.68
LHX3Q9UBR4 AC120338.1-201ENST00000625074 1541 ntBASIC4.58□□□□□ -1.68
LHX3Q9UBR4 ARHGAP21-218ENST00000636789 4210 ntTSL 2 BASIC4.58□□□□□ -1.68
LHX3Q9UBR4 MGST1-201ENST00000010404 901 ntAPPRIS P1 TSL 5 BASIC4.58□□□□□ -1.68
LHX3Q9UBR4 GPR174-201ENST00000276077 1258 ntAPPRIS P1 BASIC4.58□□□□□ -1.68
LHX3Q9UBR4 MUCL1-201ENST00000308796 470 ntAPPRIS P2 TSL 1 (best) BASIC4.58□□□□□ -1.68
LHX3Q9UBR4 AL589826.1-201ENST00000340697 249 ntBASIC4.58□□□□□ -1.68
LHX3Q9UBR4 RNA5-8SP7-201ENST00000363443 155 ntBASIC4.58□□□□□ -1.68
LHX3Q9UBR4 RNA5SP151-201ENST00000365632 117 ntBASIC4.58□□□□□ -1.68
LHX3Q9UBR4 ADIG-201ENST00000373348 430 ntTSL 2 BASIC4.58□□□□□ -1.68
LHX3Q9UBR4 RNU6-31P-201ENST00000384388 108 ntBASIC4.58□□□□□ -1.68
LHX3Q9UBR4 TRAV21-201ENST00000390449 343 ntAPPRIS P1 BASIC4.58□□□□□ -1.68
LHX3Q9UBR4 MGST1-203ENST00000396207 909 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
LHX3Q9UBR4 MIR921-201ENST00000401133 56 ntBASIC4.58□□□□□ -1.68
LHX3Q9UBR4 AL020993.1-201ENST00000420172 297 ntTSL 3 BASIC4.58□□□□□ -1.68
LHX3Q9UBR4 RPS12P10-201ENST00000427031 377 ntBASIC4.58□□□□□ -1.68
LHX3Q9UBR4 AL590666.1-201ENST00000428641 433 ntTSL 2 BASIC4.58□□□□□ -1.68
LHX3Q9UBR4 AF230666.1-201ENST00000429151 786 ntTSL 2 BASIC4.58□□□□□ -1.68
LHX3Q9UBR4 RPL21P91-201ENST00000429231 479 ntBASIC4.58□□□□□ -1.68
LHX3Q9UBR4 LINC01878-201ENST00000434559 769 ntTSL 3 BASIC4.58□□□□□ -1.68
LHX3Q9UBR4 FTH1P16-201ENST00000435241 552 ntBASIC4.58□□□□□ -1.68
LHX3Q9UBR4 AC073284.1-201ENST00000448086 404 ntTSL 3 BASIC4.58□□□□□ -1.68
LHX3Q9UBR4 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
LHX3Q9UBR4 AL445433.1-201ENST00000457507 257 ntBASIC4.58□□□□□ -1.68
LHX3Q9UBR4 PSMC1P13-201ENST00000458195 985 ntBASIC4.58□□□□□ -1.68
LHX3Q9UBR4 AC112206.1-201ENST00000468416 477 ntBASIC4.58□□□□□ -1.68
LHX3Q9UBR4 RPS4XP18-201ENST00000495480 763 ntBASIC4.58□□□□□ -1.68
LHX3Q9UBR4 AC005699.1-205ENST00000510639 427 ntTSL 2 BASIC4.58□□□□□ -1.68
LHX3Q9UBR4 RNA5SP446-201ENST00000515955 82 ntBASIC4.58□□□□□ -1.68
LHX3Q9UBR4 FTH1P11-201ENST00000517577 551 ntBASIC4.58□□□□□ -1.68
LHX3Q9UBR4 AC079917.1-201ENST00000527828 584 ntTSL 3 BASIC4.58□□□□□ -1.68
LHX3Q9UBR4 AC079917.1-202ENST00000534059 625 ntTSL 3 BASIC4.58□□□□□ -1.68
LHX3Q9UBR4 C1GALT1P1-201ENST00000548895 1089 ntBASIC4.58□□□□□ -1.68
LHX3Q9UBR4 AC068831.4-201ENST00000556118 109 ntBASIC4.58□□□□□ -1.68
LHX3Q9UBR4 AL139021.2-201ENST00000556390 399 ntTSL 3 BASIC4.58□□□□□ -1.68
LHX3Q9UBR4 AC103739.1-201ENST00000558389 474 ntTSL 3 BASIC4.58□□□□□ -1.68
LHX3Q9UBR4 SULT1C2P2-201ENST00000562517 294 ntBASIC4.58□□□□□ -1.68
LHX3Q9UBR4 AC007495.2-201ENST00000562822 459 ntTSL 3 BASIC4.58□□□□□ -1.68
LHX3Q9UBR4 MIR4472-2-201ENST00000582069 67 ntBASIC4.58□□□□□ -1.68
LHX3Q9UBR4 AC023813.4-201ENST00000607580 580 ntBASIC4.58□□□□□ -1.68
LHX3Q9UBR4 AC020634.1-201ENST00000608701 549 ntBASIC4.58□□□□□ -1.68
LHX3Q9UBR4 AC012409.3-201ENST00000611343 981 ntBASIC4.58□□□□□ -1.68
LHX3Q9UBR4 LINC00923-207ENST00000619015 505 ntTSL 5 BASIC4.58□□□□□ -1.68
LHX3Q9UBR4 MIR325HG-208ENST00000630388 1043 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
LHX3Q9UBR4 AP000542.2-201ENST00000623199 6179 ntBASIC4.58□□□□□ -1.68
LHX3Q9UBR4 BBX-206ENST00000415149 8930 ntAPPRIS P3 TSL 1 (best) BASIC4.58□□□□□ -1.68
LHX3Q9UBR4 POU2F1-202ENST00000367862 14038 ntAPPRIS ALT2 TSL 1 (best) BASIC4.58□□□□□ -1.68
LHX3Q9UBR4 ABCA13-204ENST00000435803 17184 ntAPPRIS P2 TSL 1 (best) BASIC4.58□□□□□ -1.68
LHX3Q9UBR4 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC4.58□□□□□ -1.68
LHX3Q9UBR4 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
LHX3Q9UBR4 DPY19L2P2-203ENST00000435536 1858 ntBASIC4.58□□□□□ -1.68
LHX3Q9UBR4 GAS2L3-202ENST00000537247 2742 ntTSL 2 BASIC4.58□□□□□ -1.68
LHX3Q9UBR4 CENPI-201ENST00000372926 2375 ntAPPRIS ALT2 TSL 5 BASIC4.57□□□□□ -1.68
LHX3Q9UBR4 CP-201ENST00000264613 4676 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
LHX3Q9UBR4 OR51H2P-202ENST00000641424 3046 ntBASIC4.57□□□□□ -1.68
LHX3Q9UBR4 EYA1-203ENST00000388740 3788 ntTSL 5 BASIC4.57□□□□□ -1.68
LHX3Q9UBR4 AC105411.1-201ENST00000568776 1470 ntTSL 4 BASIC4.57□□□□□ -1.68
LHX3Q9UBR4 JCHAIN-201ENST00000254801 1438 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
LHX3Q9UBR4 ELF1-204ENST00000625359 2032 ntTSL 2 BASIC4.57□□□□□ -1.68
LHX3Q9UBR4 RNU1-32P-201ENST00000363937 159 ntBASIC4.57□□□□□ -1.68
LHX3Q9UBR4 RN7SKP216-201ENST00000411050 312 ntBASIC4.57□□□□□ -1.68
LHX3Q9UBR4 CNOT7P1-201ENST00000429006 852 ntBASIC4.57□□□□□ -1.68
LHX3Q9UBR4 MTND4LP14-201ENST00000429447 288 ntBASIC4.57□□□□□ -1.68
LHX3Q9UBR4 NDUFA5P10-201ENST00000432147 357 ntBASIC4.57□□□□□ -1.68
LHX3Q9UBR4 MTCYBP12-201ENST00000440559 1134 ntBASIC4.57□□□□□ -1.68
LHX3Q9UBR4 Z99127.1-202ENST00000448686 526 ntTSL 2 BASIC4.57□□□□□ -1.68
LHX3Q9UBR4 CYCSP42-201ENST00000450823 238 ntBASIC4.57□□□□□ -1.68
LHX3Q9UBR4 LINC01941-201ENST00000455174 624 ntTSL 2 BASIC4.57□□□□□ -1.68
LHX3Q9UBR4 RPL21P126-201ENST00000470049 478 ntBASIC4.57□□□□□ -1.68
LHX3Q9UBR4 AC006463.2-201ENST00000473326 348 ntBASIC4.57□□□□□ -1.68
LHX3Q9UBR4 AC139718.2-201ENST00000506068 481 ntTSL 3 BASIC4.57□□□□□ -1.68
LHX3Q9UBR4 AC097103.1-201ENST00000512398 273 ntTSL 3 BASIC4.57□□□□□ -1.68
LHX3Q9UBR4 snoU109.6-201ENST00000516831 118 ntBASIC4.57□□□□□ -1.68
LHX3Q9UBR4 AC093331.2-201ENST00000520459 677 ntTSL 3 BASIC4.57□□□□□ -1.68
LHX3Q9UBR4 OR8G5-201ENST00000524943 1041 ntBASIC4.57□□□□□ -1.68
LHX3Q9UBR4 AP000827.1-201ENST00000527814 258 ntBASIC4.57□□□□□ -1.68
LHX3Q9UBR4 CASP1-216ENST00000534497 825 ntTSL 5 BASIC4.57□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 88.9 ms