Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 CYP7A1-201ENST00000301645 2950 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
CCDC3Q9BQI4 TRBV21OR9-2-201ENST00000331828 367 ntAPPRIS P1 BASIC4.71□□□□□ -1.66
CCDC3Q9BQI4 RPL32P3-201ENST00000359025 275 ntBASIC4.71□□□□□ -1.66
CCDC3Q9BQI4 RNU6-792P-201ENST00000363490 107 ntBASIC4.71□□□□□ -1.66
CCDC3Q9BQI4 RNU6-650P-201ENST00000365658 111 ntBASIC4.71□□□□□ -1.66
CCDC3Q9BQI4 TRAV26-2-201ENST00000390460 327 ntAPPRIS P1 BASIC4.71□□□□□ -1.66
CCDC3Q9BQI4 U3.30-201ENST00000391308 210 ntBASIC4.71□□□□□ -1.66
CCDC3Q9BQI4 RPL5P19-201ENST00000404228 893 ntBASIC4.71□□□□□ -1.66
CCDC3Q9BQI4 AC092652.1-202ENST00000413315 587 ntTSL 4 BASIC4.71□□□□□ -1.66
CCDC3Q9BQI4 AC068483.1-201ENST00000413403 660 ntTSL 3 BASIC4.71□□□□□ -1.66
CCDC3Q9BQI4 P2RY10P2-201ENST00000416730 913 ntBASIC4.71□□□□□ -1.66
CCDC3Q9BQI4 AL138789.1-201ENST00000425820 960 ntTSL 2 BASIC4.71□□□□□ -1.66
CCDC3Q9BQI4 AC092811.1-201ENST00000428642 397 ntTSL 3 BASIC4.71□□□□□ -1.66
CCDC3Q9BQI4 GSTA7P-201ENST00000438425 448 ntBASIC4.71□□□□□ -1.66
CCDC3Q9BQI4 AC024084.1-201ENST00000440744 455 ntTSL 5 BASIC4.71□□□□□ -1.66
CCDC3Q9BQI4 AP000146.1-203ENST00000444178 309 ntTSL 3 BASIC4.71□□□□□ -1.66
CCDC3Q9BQI4 AL732323.1-201ENST00000445897 456 ntTSL 3 BASIC4.71□□□□□ -1.66
CCDC3Q9BQI4 MRPL35P2-201ENST00000448009 511 ntBASIC4.71□□□□□ -1.66
CCDC3Q9BQI4 AL354771.1-201ENST00000452178 602 ntTSL 5 BASIC4.71□□□□□ -1.66
CCDC3Q9BQI4 RPS5P7-201ENST00000456664 608 ntBASIC4.71□□□□□ -1.66
CCDC3Q9BQI4 AC092958.2-201ENST00000476987 492 ntTSL 3 BASIC4.71□□□□□ -1.66
CCDC3Q9BQI4 NPM1P29-201ENST00000483112 803 ntBASIC4.71□□□□□ -1.66
CCDC3Q9BQI4 AC104629.1-201ENST00000494226 508 ntBASIC4.71□□□□□ -1.66
CCDC3Q9BQI4 AK3P4-201ENST00000504283 583 ntBASIC4.71□□□□□ -1.66
CCDC3Q9BQI4 HAUS1P1-201ENST00000505275 832 ntBASIC4.71□□□□□ -1.66
CCDC3Q9BQI4 AC079921.1-201ENST00000509449 946 ntTSL 3 BASIC4.71□□□□□ -1.66
CCDC3Q9BQI4 HMGN1P15-201ENST00000513870 295 ntBASIC4.71□□□□□ -1.66
CCDC3Q9BQI4 RPS27AP18-201ENST00000515536 459 ntBASIC4.71□□□□□ -1.66
CCDC3Q9BQI4 AF181450.1-201ENST00000522980 410 ntTSL 3 BASIC4.71□□□□□ -1.66
CCDC3Q9BQI4 AC024681.2-201ENST00000523525 204 ntTSL 5 BASIC4.71□□□□□ -1.66
CCDC3Q9BQI4 AL121852.1-201ENST00000554665 430 ntTSL 3 BASIC4.71□□□□□ -1.66
CCDC3Q9BQI4 AC009139.2-201ENST00000569032 566 ntTSL 5 BASIC4.71□□□□□ -1.66
CCDC3Q9BQI4 MIR4675-201ENST00000577898 77 ntBASIC4.71□□□□□ -1.66
CCDC3Q9BQI4 AP005262.1-201ENST00000582646 997 ntBASIC4.71□□□□□ -1.66
CCDC3Q9BQI4 CBX3P2-202ENST00000583365 535 ntBASIC4.71□□□□□ -1.66
CCDC3Q9BQI4 MIR4660-201ENST00000583549 74 ntBASIC4.71□□□□□ -1.66
CCDC3Q9BQI4 AC103810.2-203ENST00000584959 631 ntTSL 5 BASIC4.71□□□□□ -1.66
CCDC3Q9BQI4 AC091132.5-204ENST00000586348 630 ntTSL 3 BASIC4.71□□□□□ -1.66
CCDC3Q9BQI4 SLC14A2-AS1-204ENST00000592899 359 ntTSL 3 BASIC4.71□□□□□ -1.66
CCDC3Q9BQI4 AC024075.3-201ENST00000601687 453 ntTSL 5 BASIC4.71□□□□□ -1.66
CCDC3Q9BQI4 TEX41-238ENST00000604253 709 ntTSL 5 BASIC4.71□□□□□ -1.66
CCDC3Q9BQI4 AP000648.2-201ENST00000624182 404 ntBASIC4.71□□□□□ -1.66
CCDC3Q9BQI4 ABI3BP-201ENST00000284322 4498 ntAPPRIS P2 TSL 1 (best) BASIC4.71□□□□□ -1.66
CCDC3Q9BQI4 RBMS3-205ENST00000434693 8540 ntTSL 5 BASIC4.71□□□□□ -1.66
CCDC3Q9BQI4 ADAMDEC1-204ENST00000522298 2044 ntAPPRIS ALT2 TSL 2 BASIC4.71□□□□□ -1.66
CCDC3Q9BQI4 GABRG2-214ENST00000639111 11735 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
CCDC3Q9BQI4 SYTL2-204ENST00000389958 1943 ntTSL 2 BASIC4.71□□□□□ -1.66
CCDC3Q9BQI4 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
CCDC3Q9BQI4 LINC01541-202ENST00000568095 3105 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
CCDC3Q9BQI4 SNCA-213ENST00000618500 3022 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
CCDC3Q9BQI4 LINC00989-201ENST00000508174 2080 ntTSL 3 BASIC4.71□□□□□ -1.66
CCDC3Q9BQI4 MTCO1P4-201ENST00000520516 1409 ntBASIC4.71□□□□□ -1.66
CCDC3Q9BQI4 RBPJP2-201ENST00000618187 1444 ntBASIC4.71□□□□□ -1.66
CCDC3Q9BQI4 ASTE1-208ENST00000514044 2504 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
CCDC3Q9BQI4 ODAM-201ENST00000396094 1319 ntAPPRIS P1 TSL 5 BASIC4.71□□□□□ -1.66
CCDC3Q9BQI4 AL157756.1-201ENST00000532515 2859 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
CCDC3Q9BQI4 CENPE-208ENST00000611174 8260 ntTSL 5 BASIC4.7□□□□□ -1.66
CCDC3Q9BQI4 FNIP1-201ENST00000307954 6366 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
CCDC3Q9BQI4 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC4.7□□□□□ -1.66
CCDC3Q9BQI4 ALS2CR12-202ENST00000392257 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC4.7□□□□□ -1.66
CCDC3Q9BQI4 SENP1-205ENST00000549595 1932 ntAPPRIS ALT1 TSL 5 BASIC4.7□□□□□ -1.66
CCDC3Q9BQI4 MID2-202ENST00000443968 2251 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
CCDC3Q9BQI4 OR8H2-201ENST00000313503 3088 ntAPPRIS P2 BASIC4.7□□□□□ -1.66
CCDC3Q9BQI4 BTBD10P1-201ENST00000549824 1352 ntBASIC4.7□□□□□ -1.66
CCDC3Q9BQI4 EPHA3-202ENST00000452448 2546 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
CCDC3Q9BQI4 PLCB4-203ENST00000378493 5796 ntAPPRIS ALT1 TSL 2 BASIC4.7□□□□□ -1.66
CCDC3Q9BQI4 AC079915.1-201ENST00000584382 2780 ntTSL 2 BASIC4.7□□□□□ -1.66
CCDC3Q9BQI4 AC233289.1-201ENST00000403700 508 ntBASIC4.7□□□□□ -1.66
CCDC3Q9BQI4 RNU4-74P-201ENST00000411280 161 ntBASIC4.7□□□□□ -1.66
CCDC3Q9BQI4 AC007738.1-201ENST00000413892 348 ntBASIC4.7□□□□□ -1.66
CCDC3Q9BQI4 AC104462.2-201ENST00000418402 271 ntTSL 3 BASIC4.7□□□□□ -1.66
CCDC3Q9BQI4 AL158166.2-201ENST00000420845 748 ntTSL 2 BASIC4.7□□□□□ -1.66
CCDC3Q9BQI4 RPL18P10-201ENST00000425606 538 ntBASIC4.7□□□□□ -1.66
CCDC3Q9BQI4 CENPIP1-201ENST00000425713 902 ntBASIC4.7□□□□□ -1.66
CCDC3Q9BQI4 HSPE1P16-201ENST00000426640 348 ntBASIC4.7□□□□□ -1.66
CCDC3Q9BQI4 LINC01473-202ENST00000427108 695 ntTSL 5 BASIC4.7□□□□□ -1.66
CCDC3Q9BQI4 AC092162.1-201ENST00000432828 434 ntBASIC4.7□□□□□ -1.66
CCDC3Q9BQI4 AL450384.1-201ENST00000433526 413 ntTSL 2 BASIC4.7□□□□□ -1.66
CCDC3Q9BQI4 AC016831.4-201ENST00000438302 307 ntBASIC4.7□□□□□ -1.66
CCDC3Q9BQI4 SCAND3P1-201ENST00000439854 1060 ntBASIC4.7□□□□□ -1.66
CCDC3Q9BQI4 AC073052.1-201ENST00000440417 714 ntBASIC4.7□□□□□ -1.66
CCDC3Q9BQI4 AC013476.1-201ENST00000446709 537 ntTSL 4 BASIC4.7□□□□□ -1.66
CCDC3Q9BQI4 RPL23AP23-201ENST00000452590 471 ntBASIC4.7□□□□□ -1.66
CCDC3Q9BQI4 HSPE1P22-201ENST00000456856 327 ntBASIC4.7□□□□□ -1.66
CCDC3Q9BQI4 EIF2S2P5-201ENST00000457635 968 ntBASIC4.7□□□□□ -1.66
CCDC3Q9BQI4 AC015908.1-201ENST00000478739 476 ntBASIC4.7□□□□□ -1.66
CCDC3Q9BQI4 SLC9A9-AS1-201ENST00000479030 518 ntTSL 5 BASIC4.7□□□□□ -1.66
CCDC3Q9BQI4 SYT14P1-201ENST00000481459 721 ntBASIC4.7□□□□□ -1.66
CCDC3Q9BQI4 AC111000.4-201ENST00000504301 569 ntTSL 5 BASIC4.7□□□□□ -1.66
CCDC3Q9BQI4 AC105031.1-201ENST00000518550 476 ntBASIC4.7□□□□□ -1.66
CCDC3Q9BQI4 AC078906.1-201ENST00000523602 798 ntTSL 3 BASIC4.7□□□□□ -1.66
CCDC3Q9BQI4 AC025300.1-201ENST00000526616 384 ntTSL 3 BASIC4.7□□□□□ -1.66
CCDC3Q9BQI4 OR5M2P-201ENST00000529003 936 ntBASIC4.7□□□□□ -1.66
CCDC3Q9BQI4 OR8X1P-201ENST00000534542 869 ntBASIC4.7□□□□□ -1.66
CCDC3Q9BQI4 ASB8-204ENST00000536071 568 ntTSL 4 BASIC4.7□□□□□ -1.66
CCDC3Q9BQI4 AC068993.1-201ENST00000546724 589 ntBASIC4.7□□□□□ -1.66
CCDC3Q9BQI4 LINC02444-201ENST00000550723 1256 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
CCDC3Q9BQI4 AC005774.1-201ENST00000565247 567 ntTSL 4 BASIC4.7□□□□□ -1.66
CCDC3Q9BQI4 DPRXP4-201ENST00000578053 568 ntBASIC4.7□□□□□ -1.66
CCDC3Q9BQI4 DAB1-AS1-208ENST00000586465 748 ntTSL 5 BASIC4.7□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 104.1 ms