Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 ALMS1-207ENST00000614410 11700 ntAPPRIS ALT2 TSL 5 BASIC5.27□□□□□ -1.57
CCDC140Q96MF4 FRG1BP-201ENST00000278882 761 ntBASIC5.27□□□□□ -1.57
CCDC140Q96MF4 CBX3P1-201ENST00000325243 554 ntBASIC5.27□□□□□ -1.57
CCDC140Q96MF4 SNORA70.3-201ENST00000365075 132 ntBASIC5.27□□□□□ -1.57
CCDC140Q96MF4 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC5.27□□□□□ -1.57
CCDC140Q96MF4 RNU6-456P-201ENST00000384493 107 ntBASIC5.27□□□□□ -1.57
CCDC140Q96MF4 SNRPEP6-201ENST00000407465 277 ntBASIC5.27□□□□□ -1.57
CCDC140Q96MF4 AL139100.1-201ENST00000408001 498 ntBASIC5.27□□□□□ -1.57
CCDC140Q96MF4 EIF4A1P5-201ENST00000428062 1095 ntBASIC5.27□□□□□ -1.57
CCDC140Q96MF4 USP9YP9-201ENST00000429406 715 ntBASIC5.27□□□□□ -1.57
CCDC140Q96MF4 AL590128.1-201ENST00000433407 286 ntBASIC5.27□□□□□ -1.57
CCDC140Q96MF4 AC119618.1-201ENST00000434191 222 ntBASIC5.27□□□□□ -1.57
CCDC140Q96MF4 SDCBPP1-201ENST00000440192 890 ntBASIC5.27□□□□□ -1.57
CCDC140Q96MF4 AF196972.1-201ENST00000445586 653 ntTSL 3 BASIC5.27□□□□□ -1.57
CCDC140Q96MF4 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC5.27□□□□□ -1.57
CCDC140Q96MF4 RPL7AP71-201ENST00000451120 739 ntBASIC5.27□□□□□ -1.57
CCDC140Q96MF4 AC006026.3-201ENST00000454029 143 ntTSL 3 BASIC5.27□□□□□ -1.57
CCDC140Q96MF4 RPL36AP55-201ENST00000454114 305 ntBASIC5.27□□□□□ -1.57
CCDC140Q96MF4 RBMY2EP-202ENST00000456360 940 ntBASIC5.27□□□□□ -1.57
CCDC140Q96MF4 AC011005.3-201ENST00000491624 395 ntBASIC5.27□□□□□ -1.57
CCDC140Q96MF4 AC008629.1-202ENST00000504820 525 ntTSL 4 BASIC5.27□□□□□ -1.57
CCDC140Q96MF4 AC114786.4-201ENST00000508771 728 ntBASIC5.27□□□□□ -1.57
CCDC140Q96MF4 TXNP6-201ENST00000510190 310 ntBASIC5.27□□□□□ -1.57
CCDC140Q96MF4 AC110792.2-201ENST00000510278 224 ntBASIC5.27□□□□□ -1.57
CCDC140Q96MF4 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC5.27□□□□□ -1.57
CCDC140Q96MF4 AC093599.1-201ENST00000515232 562 ntTSL 4 BASIC5.27□□□□□ -1.57
CCDC140Q96MF4 RPL26L1-203ENST00000519239 679 ntAPPRIS P1 TSL 2 BASIC5.27□□□□□ -1.57
CCDC140Q96MF4 AC027309.1-201ENST00000519976 528 ntTSL 4 BASIC5.27□□□□□ -1.57
CCDC140Q96MF4 HGNC:24955-208ENST00000521585 1260 ntTSL 4 BASIC5.27□□□□□ -1.57
CCDC140Q96MF4 AC103718.1-201ENST00000522667 683 ntTSL 3 BASIC5.27□□□□□ -1.57
CCDC140Q96MF4 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC5.27□□□□□ -1.57
CCDC140Q96MF4 SPAG11B-207ENST00000528168 481 ntTSL 5 BASIC5.27□□□□□ -1.57
CCDC140Q96MF4 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC5.27□□□□□ -1.57
CCDC140Q96MF4 TAS2R14-202ENST00000537503 1858 ntAPPRIS P1 BASIC5.27□□□□□ -1.57
CCDC140Q96MF4 AC140063.1-201ENST00000541343 259 ntBASIC5.27□□□□□ -1.57
CCDC140Q96MF4 EEF1A1P17-201ENST00000547505 1275 ntBASIC5.27□□□□□ -1.57
CCDC140Q96MF4 RACGAP1P-201ENST00000550663 1879 ntBASIC5.27□□□□□ -1.57
CCDC140Q96MF4 IQCK-206ENST00000564186 882 ntAPPRIS ALT2 TSL 2 BASIC5.27□□□□□ -1.57
CCDC140Q96MF4 AC009101.1-201ENST00000568135 242 ntBASIC5.27□□□□□ -1.57
CCDC140Q96MF4 LINC01572-205ENST00000570152 360 ntTSL 3 BASIC5.27□□□□□ -1.57
CCDC140Q96MF4 AC087501.3-201ENST00000576477 513 ntTSL 5 BASIC5.27□□□□□ -1.57
CCDC140Q96MF4 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC5.27□□□□□ -1.57
CCDC140Q96MF4 AC090616.5-202ENST00000582111 297 ntBASIC5.27□□□□□ -1.57
CCDC140Q96MF4 AC019131.1-201ENST00000583654 622 ntTSL 5 BASIC5.27□□□□□ -1.57
CCDC140Q96MF4 AC015818.6-201ENST00000584274 634 ntBASIC5.27□□□□□ -1.57
CCDC140Q96MF4 RPL23AP92-201ENST00000603609 255 ntBASIC5.27□□□□□ -1.57
CCDC140Q96MF4 AC112230.1-201ENST00000604342 547 ntBASIC5.27□□□□□ -1.57
CCDC140Q96MF4 LINC01011-204ENST00000605901 1573 ntTSL 2 BASIC5.27□□□□□ -1.57
CCDC140Q96MF4 TP53TG1_2.1-201ENST00000611226 182 ntBASIC5.27□□□□□ -1.57
CCDC140Q96MF4 MIR8082-201ENST00000612488 81 ntBASIC5.27□□□□□ -1.57
CCDC140Q96MF4 EDRF1-AS1-210ENST00000613304 569 ntTSL 5 BASIC5.27□□□□□ -1.57
CCDC140Q96MF4 AC009318.4-201ENST00000620496 486 ntBASIC5.27□□□□□ -1.57
CCDC140Q96MF4 AC069234.4-201ENST00000621276 412 ntBASIC5.27□□□□□ -1.57
CCDC140Q96MF4 AC091953.2-201ENST00000623979 160 ntBASIC5.27□□□□□ -1.57
CCDC140Q96MF4 SNORA16A-202ENST00000628458 135 ntBASIC5.27□□□□□ -1.57
CCDC140Q96MF4 OR5M3-202ENST00000641993 1400 ntAPPRIS P1 BASIC5.27□□□□□ -1.57
CCDC140Q96MF4 ATF7IP-201ENST00000261168 8878 ntAPPRIS P3 TSL 5 BASIC5.27□□□□□ -1.57
CCDC140Q96MF4 NXF4-201ENST00000360035 3617 ntTSL 2 BASIC5.27□□□□□ -1.57
CCDC140Q96MF4 ZMYM4-201ENST00000314607 6994 ntAPPRIS P1 TSL 2 BASIC5.27□□□□□ -1.57
CCDC140Q96MF4 EZH1-202ENST00000428826 4623 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
CCDC140Q96MF4 TM4SF20-201ENST00000304568 2296 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
CCDC140Q96MF4 VTCN1-201ENST00000328189 2289 ntTSL 5 BASIC5.27□□□□□ -1.57
CCDC140Q96MF4 SPATA6-202ENST00000371843 2297 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
CCDC140Q96MF4 AL136317.2-201ENST00000619851 2254 ntTSL 2 BASIC5.27□□□□□ -1.57
CCDC140Q96MF4 AL118496.1-201ENST00000440201 1812 ntBASIC5.27□□□□□ -1.57
CCDC140Q96MF4 NRXN1-248ENST00000636345 3595 ntTSL 5 BASIC5.27□□□□□ -1.57
CCDC140Q96MF4 GAPVD1-202ENST00000297933 6003 ntAPPRIS ALT2 TSL 1 (best) BASIC5.27□□□□□ -1.57
CCDC140Q96MF4 AC083806.2-201ENST00000617795 2685 ntBASIC5.27□□□□□ -1.57
CCDC140Q96MF4 LINC02532-208ENST00000602621 2232 ntTSL 2 BASIC5.27□□□□□ -1.57
CCDC140Q96MF4 TRMT10A-202ENST00000394876 1638 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
CCDC140Q96MF4 AC097714.1-201ENST00000511272 1647 ntBASIC5.26□□□□□ -1.57
CCDC140Q96MF4 NAV1-201ENST00000367295 11645 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
CCDC140Q96MF4 PSG5-210ENST00000599812 1884 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
CCDC140Q96MF4 MELK-210ENST00000543751 2400 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
CCDC140Q96MF4 NEDD9-216ENST00000620854 4086 ntTSL 5 BASIC5.26□□□□□ -1.57
CCDC140Q96MF4 PLEKHA1-204ENST00000392799 3221 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
CCDC140Q96MF4 POLR1A-201ENST00000263857 12749 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
CCDC140Q96MF4 MCCC1-210ENST00000492597 2774 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
CCDC140Q96MF4 GRIK1-201ENST00000327783 3179 ntTSL 5 BASIC5.26□□□□□ -1.57
CCDC140Q96MF4 FBXW10-203ENST00000395665 3431 ntAPPRIS P3 TSL 1 (best) BASIC5.26□□□□□ -1.57
CCDC140Q96MF4 FAM208A-210ENST00000614531 3441 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
CCDC140Q96MF4 RNA5SP429-201ENST00000363688 109 ntBASIC5.26□□□□□ -1.57
CCDC140Q96MF4 RN7SKP189-201ENST00000365042 330 ntBASIC5.26□□□□□ -1.57
CCDC140Q96MF4 SNORD82-201ENST00000365530 70 ntBASIC5.26□□□□□ -1.57
CCDC140Q96MF4 SNORA20.2-201ENST00000383922 131 ntBASIC5.26□□□□□ -1.57
CCDC140Q96MF4 RNU6-1207P-201ENST00000384343 107 ntBASIC5.26□□□□□ -1.57
CCDC140Q96MF4 TRAV19-201ENST00000390447 467 ntAPPRIS P1 BASIC5.26□□□□□ -1.57
CCDC140Q96MF4 AC008171.1-201ENST00000395058 200 ntBASIC5.26□□□□□ -1.57
CCDC140Q96MF4 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
CCDC140Q96MF4 AL603766.1-201ENST00000407763 664 ntBASIC5.26□□□□□ -1.57
CCDC140Q96MF4 CYCSP17-201ENST00000407870 315 ntBASIC5.26□□□□□ -1.57
CCDC140Q96MF4 LINC00342-201ENST00000412393 654 ntTSL 3 BASIC5.26□□□□□ -1.57
CCDC140Q96MF4 AC019130.1-201ENST00000413841 391 ntTSL 2 BASIC5.26□□□□□ -1.57
CCDC140Q96MF4 BX284668.3-201ENST00000414128 882 ntTSL 5 BASIC5.26□□□□□ -1.57
CCDC140Q96MF4 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC5.26□□□□□ -1.57
CCDC140Q96MF4 GNG12-AS1-202ENST00000414904 796 ntTSL 3 BASIC5.26□□□□□ -1.57
CCDC140Q96MF4 OR51A5P-201ENST00000415429 942 ntBASIC5.26□□□□□ -1.57
CCDC140Q96MF4 AL160163.1-201ENST00000417465 403 ntTSL 3 BASIC5.26□□□□□ -1.57
CCDC140Q96MF4 AC011752.1-203ENST00000417609 582 ntTSL 2 BASIC5.26□□□□□ -1.57
CCDC140Q96MF4 ZNF90P2-204ENST00000419323 1075 ntBASIC5.26□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 83.3 ms