Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 OR51I1-201ENST00000380211 945 ntAPPRIS P1 BASIC4.65□□□□□ -1.67
CCDC42Q96M95 AC019155.1-201ENST00000382242 574 ntBASIC4.65□□□□□ -1.67
CCDC42Q96M95 AL645733.1-201ENST00000402250 217 ntBASIC4.65□□□□□ -1.67
CCDC42Q96M95 AL049697.2-201ENST00000403708 294 ntBASIC4.65□□□□□ -1.67
CCDC42Q96M95 RPL23AP48-201ENST00000406913 488 ntBASIC4.65□□□□□ -1.67
CCDC42Q96M95 SPTLC1P2-201ENST00000407089 121 ntBASIC4.65□□□□□ -1.67
CCDC42Q96M95 AL589642.2-201ENST00000413291 839 ntTSL 3 BASIC4.65□□□□□ -1.67
CCDC42Q96M95 AC092570.3-201ENST00000420113 693 ntBASIC4.65□□□□□ -1.67
CCDC42Q96M95 EIF1P3-201ENST00000423841 334 ntBASIC4.65□□□□□ -1.67
CCDC42Q96M95 AL354956.1-201ENST00000424487 467 ntTSL 5 BASIC4.65□□□□□ -1.67
CCDC42Q96M95 LINC01492-202ENST00000425157 659 ntTSL 5 BASIC4.65□□□□□ -1.67
CCDC42Q96M95 TMEM196-204ENST00000433641 768 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
CCDC42Q96M95 AL627308.1-201ENST00000435693 821 ntBASIC4.65□□□□□ -1.67
CCDC42Q96M95 ELOCP8-201ENST00000439309 332 ntBASIC4.65□□□□□ -1.67
CCDC42Q96M95 ELOCP15-201ENST00000442090 332 ntBASIC4.65□□□□□ -1.67
CCDC42Q96M95 AC073648.4-201ENST00000442655 781 ntBASIC4.65□□□□□ -1.67
CCDC42Q96M95 ITGA9-AS1-207ENST00000445429 532 ntTSL 5 BASIC4.65□□□□□ -1.67
CCDC42Q96M95 AL355870.1-201ENST00000448272 454 ntTSL 3 BASIC4.65□□□□□ -1.67
CCDC42Q96M95 HIGD1AP8-201ENST00000453927 274 ntBASIC4.65□□□□□ -1.67
CCDC42Q96M95 RPS3AP53-201ENST00000454716 778 ntBASIC4.65□□□□□ -1.67
CCDC42Q96M95 ARHGEF3-AS1-201ENST00000477246 489 ntTSL 2 BASIC4.65□□□□□ -1.67
CCDC42Q96M95 AC098583.1-201ENST00000480875 255 ntBASIC4.65□□□□□ -1.67
CCDC42Q96M95 ATXN3-206ENST00000502250 1259 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
CCDC42Q96M95 OR5M14P-201ENST00000506803 618 ntBASIC4.65□□□□□ -1.67
CCDC42Q96M95 RN7SKP5-201ENST00000517045 272 ntBASIC4.65□□□□□ -1.67
CCDC42Q96M95 AP002981.1-201ENST00000517692 975 ntBASIC4.65□□□□□ -1.67
CCDC42Q96M95 IGKV1-32-201ENST00000519290 311 ntBASIC4.65□□□□□ -1.67
CCDC42Q96M95 AL078612.2-201ENST00000525133 646 ntTSL 3 BASIC4.65□□□□□ -1.67
CCDC42Q96M95 AC091564.3-201ENST00000527398 429 ntTSL 3 BASIC4.65□□□□□ -1.67
CCDC42Q96M95 OR5BC1P-201ENST00000529327 739 ntBASIC4.65□□□□□ -1.67
CCDC42Q96M95 AC084880.2-201ENST00000536009 501 ntTSL 3 BASIC4.65□□□□□ -1.67
CCDC42Q96M95 AC010547.7-201ENST00000570323 333 ntBASIC4.65□□□□□ -1.67
CCDC42Q96M95 PDE6G-203ENST00000571224 526 ntAPPRIS P1 TSL 5 BASIC4.65□□□□□ -1.67
CCDC42Q96M95 AC005899.1-201ENST00000584125 563 ntTSL 5 BASIC4.65□□□□□ -1.67
CCDC42Q96M95 EIF4A2P1-201ENST00000587313 1063 ntBASIC4.65□□□□□ -1.67
CCDC42Q96M95 MIR4500HG-205ENST00000606590 579 ntTSL 4 BASIC4.65□□□□□ -1.67
CCDC42Q96M95 AL021997.2-201ENST00000615674 271 ntBASIC4.65□□□□□ -1.67
CCDC42Q96M95 AL121873.1-201ENST00000616013 524 ntBASIC4.65□□□□□ -1.67
CCDC42Q96M95 BMS1P21-201ENST00000634565 365 ntBASIC4.65□□□□□ -1.67
CCDC42Q96M95 OR52N4-202ENST00000641350 1276 ntAPPRIS P1 BASIC4.65□□□□□ -1.67
CCDC42Q96M95 AL450326.2-201ENST00000421913 1962 ntBASIC4.65□□□□□ -1.67
CCDC42Q96M95 ZSCAN4-202ENST00000612521 1979 ntAPPRIS P1 TSL 5 BASIC4.65□□□□□ -1.67
CCDC42Q96M95 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
CCDC42Q96M95 SMARCA2-201ENST00000302401 2242 ntTSL 2 BASIC4.65□□□□□ -1.67
CCDC42Q96M95 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC4.65□□□□□ -1.67
CCDC42Q96M95 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC4.65□□□□□ -1.67
CCDC42Q96M95 C9orf72-203ENST00000380003 3200 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
CCDC42Q96M95 MGA-202ENST00000545763 11413 ntAPPRIS ALT2 TSL 5 BASIC4.64□□□□□ -1.67
CCDC42Q96M95 AC089984.1-201ENST00000552780 1431 ntTSL 3 BASIC4.64□□□□□ -1.67
CCDC42Q96M95 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
CCDC42Q96M95 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC4.64□□□□□ -1.67
CCDC42Q96M95 AL645927.1-201ENST00000396783 406 ntBASIC4.64□□□□□ -1.67
CCDC42Q96M95 AC097374.1-203ENST00000400783 485 ntBASIC4.64□□□□□ -1.67
CCDC42Q96M95 AL607077.1-201ENST00000401718 499 ntBASIC4.64□□□□□ -1.67
CCDC42Q96M95 BX510359.3-201ENST00000422168 306 ntBASIC4.64□□□□□ -1.67
CCDC42Q96M95 MAGI2-AS3-204ENST00000426835 738 ntTSL 3 BASIC4.64□□□□□ -1.67
CCDC42Q96M95 AC104837.2-201ENST00000427236 424 ntBASIC4.64□□□□□ -1.67
CCDC42Q96M95 AL451140.1-201ENST00000430534 371 ntTSL 3 BASIC4.64□□□□□ -1.67
CCDC42Q96M95 AC053481.1-201ENST00000467217 306 ntBASIC4.64□□□□□ -1.67
CCDC42Q96M95 RPL12P20-201ENST00000475538 479 ntBASIC4.64□□□□□ -1.67
CCDC42Q96M95 TFEC-208ENST00000484212 1245 ntTSL 2 BASIC4.64□□□□□ -1.67
CCDC42Q96M95 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC4.64□□□□□ -1.67
CCDC42Q96M95 AC008591.1-201ENST00000503616 631 ntTSL 3 BASIC4.64□□□□□ -1.67
CCDC42Q96M95 NDUFB5P1-201ENST00000508134 564 ntBASIC4.64□□□□□ -1.67
CCDC42Q96M95 NDUFB4P12-201ENST00000513465 390 ntBASIC4.64□□□□□ -1.67
CCDC42Q96M95 OR7H2P-201ENST00000513483 306 ntBASIC4.64□□□□□ -1.67
CCDC42Q96M95 IGLVVI-25-1-201ENST00000521893 249 ntBASIC4.64□□□□□ -1.67
CCDC42Q96M95 AP001922.4-201ENST00000526967 290 ntBASIC4.64□□□□□ -1.67
CCDC42Q96M95 BRD9P1-201ENST00000529855 560 ntBASIC4.64□□□□□ -1.67
CCDC42Q96M95 AC009803.1-202ENST00000551940 544 ntTSL 4 BASIC4.64□□□□□ -1.67
CCDC42Q96M95 OR1AB1P-201ENST00000585564 761 ntBASIC4.64□□□□□ -1.67
CCDC42Q96M95 ZNF540-204ENST00000586792 564 ntTSL 3 BASIC4.64□□□□□ -1.67
CCDC42Q96M95 AC114684.1-201ENST00000587659 352 ntTSL 3 BASIC4.64□□□□□ -1.67
CCDC42Q96M95 AP001160.4-201ENST00000596971 382 ntBASIC4.64□□□□□ -1.67
CCDC42Q96M95 AC015849.3-201ENST00000603981 488 ntTSL 5 BASIC4.64□□□□□ -1.67
CCDC42Q96M95 OR8H1-202ENST00000610894 927 ntAPPRIS ALT1 BASIC4.64□□□□□ -1.67
CCDC42Q96M95 MIR6862-1-201ENST00000613016 70 ntBASIC4.64□□□□□ -1.67
CCDC42Q96M95 MIR6862-2-201ENST00000614755 70 ntBASIC4.64□□□□□ -1.67
CCDC42Q96M95 AL049536.1-201ENST00000625043 744 ntBASIC4.64□□□□□ -1.67
CCDC42Q96M95 FAM26D-205ENST00000628083 1117 ntTSL 2 BASIC4.64□□□□□ -1.67
CCDC42Q96M95 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC4.64□□□□□ -1.67
CCDC42Q96M95 ERICH3-AS1-202ENST00000612390 4874 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
CCDC42Q96M95 GPBP1-204ENST00000506184 2857 ntAPPRIS P3 TSL 1 (best) BASIC4.64□□□□□ -1.67
CCDC42Q96M95 AL929601.4-201ENST00000613011 1341 ntBASIC4.64□□□□□ -1.67
CCDC42Q96M95 AC097504.1-201ENST00000515103 2415 ntBASIC4.64□□□□□ -1.67
CCDC42Q96M95 CCT6B-203ENST00000436961 1639 ntTSL 2 BASIC4.64□□□□□ -1.67
CCDC42Q96M95 SMG1P1-206ENST00000431681 2913 ntTSL 2 BASIC4.63□□□□□ -1.67
CCDC42Q96M95 AC131971.1-201ENST00000332881 1482 ntBASIC4.63□□□□□ -1.67
CCDC42Q96M95 IQCH-214ENST00000629425 1822 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
CCDC42Q96M95 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC4.63□□□□□ -1.67
CCDC42Q96M95 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
CCDC42Q96M95 RBMS1-203ENST00000409075 1550 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
CCDC42Q96M95 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC4.63□□□□□ -1.67
CCDC42Q96M95 RNA5SP175-201ENST00000364275 119 ntBASIC4.63□□□□□ -1.67
CCDC42Q96M95 AC012358.3-203ENST00000366287 1110 ntTSL 3 BASIC4.63□□□□□ -1.67
CCDC42Q96M95 KRTAP19-8-201ENST00000382822 318 ntAPPRIS P1 BASIC4.63□□□□□ -1.67
CCDC42Q96M95 TRAV21-201ENST00000390449 343 ntAPPRIS P1 BASIC4.63□□□□□ -1.67
CCDC42Q96M95 LINC02020-202ENST00000421006 575 ntTSL 4 BASIC4.63□□□□□ -1.67
CCDC42Q96M95 SCP2-206ENST00000430330 938 ntTSL 2 BASIC4.63□□□□□ -1.67
CCDC42Q96M95 TEX41-205ENST00000431734 529 ntTSL 4 BASIC4.63□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 85.5 ms