Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC4.89□□□□□ -1.63
HDDC3Q8N4P3 DHX40P1-201ENST00000588725 1412 ntBASIC4.89□□□□□ -1.63
HDDC3Q8N4P3 C8orf4-201ENST00000315792 1854 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
HDDC3Q8N4P3 AC004817.4-201ENST00000602396 3625 ntBASIC4.88□□□□□ -1.63
HDDC3Q8N4P3 FABP4-201ENST00000256104 941 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
HDDC3Q8N4P3 MIR23A-201ENST00000385245 73 ntBASIC4.88□□□□□ -1.63
HDDC3Q8N4P3 U3.30-201ENST00000391308 210 ntBASIC4.88□□□□□ -1.63
HDDC3Q8N4P3 AL589655.1-201ENST00000405398 482 ntBASIC4.88□□□□□ -1.63
HDDC3Q8N4P3 MIR1193-201ENST00000408109 78 ntBASIC4.88□□□□□ -1.63
HDDC3Q8N4P3 AF178030.1-201ENST00000415088 402 ntTSL 2 BASIC4.88□□□□□ -1.63
HDDC3Q8N4P3 QRSL1P2-201ENST00000418582 964 ntBASIC4.88□□□□□ -1.63
HDDC3Q8N4P3 SLC9B1P4-201ENST00000421957 1288 ntBASIC4.88□□□□□ -1.63
HDDC3Q8N4P3 RPS27AP7-201ENST00000422792 455 ntBASIC4.88□□□□□ -1.63
HDDC3Q8N4P3 RPL12P34-201ENST00000424532 479 ntBASIC4.88□□□□□ -1.63
HDDC3Q8N4P3 OR5K2-201ENST00000427338 1060 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
HDDC3Q8N4P3 TNKS2-AS1-201ENST00000432246 609 ntTSL 2 BASIC4.88□□□□□ -1.63
HDDC3Q8N4P3 MRPS33P4-201ENST00000434892 317 ntBASIC4.88□□□□□ -1.63
HDDC3Q8N4P3 AC073052.1-201ENST00000440417 714 ntBASIC4.88□□□□□ -1.63
HDDC3Q8N4P3 RPL7AP61-201ENST00000443410 636 ntBASIC4.88□□□□□ -1.63
HDDC3Q8N4P3 RPS5P7-201ENST00000456664 608 ntBASIC4.88□□□□□ -1.63
HDDC3Q8N4P3 MTND2P28-201ENST00000457540 1044 ntBASIC4.88□□□□□ -1.63
HDDC3Q8N4P3 RPS17P2-201ENST00000461663 408 ntBASIC4.88□□□□□ -1.63
HDDC3Q8N4P3 MME-AS1-201ENST00000484721 828 ntTSL 2 BASIC4.88□□□□□ -1.63
HDDC3Q8N4P3 HMGB1P3-201ENST00000502802 616 ntBASIC4.88□□□□□ -1.63
HDDC3Q8N4P3 AC108157.1-201ENST00000510511 539 ntBASIC4.88□□□□□ -1.63
HDDC3Q8N4P3 AC093840.1-201ENST00000511599 336 ntBASIC4.88□□□□□ -1.63
HDDC3Q8N4P3 AC073429.1-201ENST00000511749 503 ntTSL 3 BASIC4.88□□□□□ -1.63
HDDC3Q8N4P3 AC097460.1-204ENST00000515026 764 ntTSL 5 BASIC4.88□□□□□ -1.63
HDDC3Q8N4P3 AC100784.1-201ENST00000522790 310 ntBASIC4.88□□□□□ -1.63
HDDC3Q8N4P3 AC026401.1-201ENST00000549756 530 ntTSL 3 BASIC4.88□□□□□ -1.63
HDDC3Q8N4P3 AC133555.2-201ENST00000550213 292 ntBASIC4.88□□□□□ -1.63
HDDC3Q8N4P3 AC103739.1-201ENST00000558389 474 ntTSL 3 BASIC4.88□□□□□ -1.63
HDDC3Q8N4P3 AC067805.1-201ENST00000559344 470 ntBASIC4.88□□□□□ -1.63
HDDC3Q8N4P3 AC090515.3-201ENST00000560431 315 ntBASIC4.88□□□□□ -1.63
HDDC3Q8N4P3 AC066612.1-202ENST00000561094 518 ntTSL 5 BASIC4.88□□□□□ -1.63
HDDC3Q8N4P3 AC023158.1-201ENST00000561632 1025 ntBASIC4.88□□□□□ -1.63
HDDC3Q8N4P3 AC002091.1-201ENST00000578788 557 ntTSL 2 BASIC4.88□□□□□ -1.63
HDDC3Q8N4P3 AC127024.5-201ENST00000580085 462 ntBASIC4.88□□□□□ -1.63
HDDC3Q8N4P3 AC005899.1-201ENST00000584125 563 ntTSL 5 BASIC4.88□□□□□ -1.63
HDDC3Q8N4P3 DAB1-AS1-208ENST00000586465 748 ntTSL 5 BASIC4.88□□□□□ -1.63
HDDC3Q8N4P3 AC022726.1-201ENST00000587475 207 ntBASIC4.88□□□□□ -1.63
HDDC3Q8N4P3 AC004862.1-203ENST00000598433 1020 ntTSL 5 BASIC4.88□□□□□ -1.63
HDDC3Q8N4P3 SATB1-AS1-222ENST00000600177 751 ntTSL 5 BASIC4.88□□□□□ -1.63
HDDC3Q8N4P3 IGKV1OR2-9-201ENST00000603957 287 ntBASIC4.88□□□□□ -1.63
HDDC3Q8N4P3 IGKV1OR2-11-201ENST00000604120 287 ntBASIC4.88□□□□□ -1.63
HDDC3Q8N4P3 INTS6-AS1-226ENST00000610018 672 ntTSL 5 BASIC4.88□□□□□ -1.63
HDDC3Q8N4P3 AC011472.4-201ENST00000615848 491 ntBASIC4.88□□□□□ -1.63
HDDC3Q8N4P3 AC016957.2-201ENST00000616998 848 ntBASIC4.88□□□□□ -1.63
HDDC3Q8N4P3 AC139769.3-201ENST00000618383 175 ntBASIC4.88□□□□□ -1.63
HDDC3Q8N4P3 AL022401.1-201ENST00000619498 108 ntBASIC4.88□□□□□ -1.63
HDDC3Q8N4P3 POU2F1-206ENST00000429375 13651 ntAPPRIS ALT2 TSL 2 BASIC4.88□□□□□ -1.63
HDDC3Q8N4P3 AC108751.5-201ENST00000492880 1336 ntBASIC4.88□□□□□ -1.63
HDDC3Q8N4P3 AC073136.1-201ENST00000449426 2884 ntBASIC4.88□□□□□ -1.63
HDDC3Q8N4P3 KCNJ16-204ENST00000585558 4014 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
HDDC3Q8N4P3 UBE3A-203ENST00000428984 2986 ntAPPRIS P3 TSL 5 BASIC4.88□□□□□ -1.63
HDDC3Q8N4P3 FAM184A-204ENST00000368475 3392 ntTSL 2 BASIC4.88□□□□□ -1.63
HDDC3Q8N4P3 AC008758.3-201ENST00000507003 1829 ntBASIC4.88□□□□□ -1.63
HDDC3Q8N4P3 JCHAIN-201ENST00000254801 1438 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
HDDC3Q8N4P3 CD86-203ENST00000393627 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC4.88□□□□□ -1.63
HDDC3Q8N4P3 DOCK7-211ENST00000634264 6303 ntAPPRIS ALT2 TSL 5 BASIC4.88□□□□□ -1.63
HDDC3Q8N4P3 AC105411.1-201ENST00000568776 1470 ntTSL 4 BASIC4.88□□□□□ -1.63
HDDC3Q8N4P3 AC104623.2-202ENST00000623477 4002 ntBASIC4.88□□□□□ -1.63
HDDC3Q8N4P3 LTN1-202ENST00000389194 7749 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
HDDC3Q8N4P3 SNRPB2-202ENST00000377943 1588 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
HDDC3Q8N4P3 MYBPC1-202ENST00000361685 3871 ntAPPRIS ALT2 TSL 1 (best) BASIC4.87□□□□□ -1.63
HDDC3Q8N4P3 SCEL-205ENST00000535157 3096 ntAPPRIS ALT2 TSL 2 BASIC4.87□□□□□ -1.63
HDDC3Q8N4P3 ATP13A4-203ENST00000392443 4016 ntTSL 5 BASIC4.87□□□□□ -1.63
HDDC3Q8N4P3 CFH-206ENST00000630130 1658 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
HDDC3Q8N4P3 C9orf153-204ENST00000613665 1738 ntAPPRIS P2 TSL 2 BASIC4.87□□□□□ -1.63
HDDC3Q8N4P3 C3orf67-AS1-202ENST00000482372 2203 ntTSL 2 BASIC4.87□□□□□ -1.63
HDDC3Q8N4P3 C2orf76-201ENST00000334816 676 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
HDDC3Q8N4P3 Y_RNA.126-201ENST00000363382 111 ntBASIC4.87□□□□□ -1.63
HDDC3Q8N4P3 BANF2-202ENST00000377805 444 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
HDDC3Q8N4P3 RPL21P67-201ENST00000402896 478 ntBASIC4.87□□□□□ -1.63
HDDC3Q8N4P3 CACYBP-203ENST00000406752 243 ntTSL 5 BASIC4.87□□□□□ -1.63
HDDC3Q8N4P3 RNA5SP345-201ENST00000410646 108 ntBASIC4.87□□□□□ -1.63
HDDC3Q8N4P3 RSU1P3-201ENST00000412878 835 ntBASIC4.87□□□□□ -1.63
HDDC3Q8N4P3 AC073136.2-201ENST00000417282 849 ntBASIC4.87□□□□□ -1.63
HDDC3Q8N4P3 AC023347.1-202ENST00000419223 440 ntTSL 5 BASIC4.87□□□□□ -1.63
HDDC3Q8N4P3 AC104170.2-201ENST00000424246 678 ntTSL 3 BASIC4.87□□□□□ -1.63
HDDC3Q8N4P3 AC012519.1-201ENST00000424588 610 ntBASIC4.87□□□□□ -1.63
HDDC3Q8N4P3 AP000233.1-201ENST00000426609 291 ntTSL 3 BASIC4.87□□□□□ -1.63
HDDC3Q8N4P3 FMR1-IT1-201ENST00000441414 343 ntTSL 5 BASIC4.87□□□□□ -1.63
HDDC3Q8N4P3 AL357520.1-201ENST00000441557 453 ntBASIC4.87□□□□□ -1.63
HDDC3Q8N4P3 LARS2-AS1-201ENST00000442534 575 ntTSL 4 BASIC4.87□□□□□ -1.63
HDDC3Q8N4P3 AL365271.1-201ENST00000448909 603 ntTSL 3 BASIC4.87□□□□□ -1.63
HDDC3Q8N4P3 TMEM246-AS1-204ENST00000450109 538 ntTSL 3 BASIC4.87□□□□□ -1.63
HDDC3Q8N4P3 AL161630.1-201ENST00000450938 1299 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
HDDC3Q8N4P3 AP001439.1-201ENST00000455275 392 ntTSL 2 BASIC4.87□□□□□ -1.63
HDDC3Q8N4P3 AC093166.2-201ENST00000455969 1017 ntBASIC4.87□□□□□ -1.63
HDDC3Q8N4P3 AC073486.1-202ENST00000458437 489 ntTSL 3 BASIC4.87□□□□□ -1.63
HDDC3Q8N4P3 AC021660.1-201ENST00000465006 554 ntBASIC4.87□□□□□ -1.63
HDDC3Q8N4P3 AL035454.1-201ENST00000470758 433 ntTSL 3 BASIC4.87□□□□□ -1.63
HDDC3Q8N4P3 RPL12P20-201ENST00000475538 479 ntBASIC4.87□□□□□ -1.63
HDDC3Q8N4P3 MTND6P6-201ENST00000478031 263 ntBASIC4.87□□□□□ -1.63
HDDC3Q8N4P3 AC011396.2-202ENST00000511390 375 ntTSL 3 BASIC4.87□□□□□ -1.63
HDDC3Q8N4P3 VNN2-207ENST00000525289 900 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
HDDC3Q8N4P3 AC079089.1-204ENST00000530194 572 ntTSL 2 BASIC4.87□□□□□ -1.63
HDDC3Q8N4P3 GABARAPL1-212ENST00000543602 653 ntTSL 5 BASIC4.87□□□□□ -1.63
HDDC3Q8N4P3 AC068446.3-201ENST00000555285 382 ntBASIC4.87□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 142.1 ms