Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 RNMT-209ENST00000592764 4108 ntTSL 2 BASIC4.17□□□□□ -1.74
SKA3Q8IX90 AL445487.1-201ENST00000415694 1580 ntBASIC4.17□□□□□ -1.74
SKA3Q8IX90 VNN3-211ENST00000509351 1700 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
SKA3Q8IX90 DDX20-202ENST00000475700 4332 ntTSL 2 BASIC4.17□□□□□ -1.74
SKA3Q8IX90 AL442639.1-201ENST00000625030 1899 ntBASIC4.17□□□□□ -1.74
SKA3Q8IX90 AC093535.2-201ENST00000624769 2326 ntBASIC4.17□□□□□ -1.74
SKA3Q8IX90 RBBP6-203ENST00000381039 3384 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
SKA3Q8IX90 PHF11-215ENST00000488958 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC4.17□□□□□ -1.74
SKA3Q8IX90 AC092329.3-201ENST00000611392 1904 ntAPPRIS P1 TSL 5 BASIC4.17□□□□□ -1.74
SKA3Q8IX90 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
SKA3Q8IX90 AC018529.3-201ENST00000624212 2254 ntBASIC4.16□□□□□ -1.74
SKA3Q8IX90 ANKRD20A10P-201ENST00000457591 1515 ntBASIC4.16□□□□□ -1.74
SKA3Q8IX90 R3HCC1L-201ENST00000298999 3379 ntAPPRIS P1 TSL 5 BASIC4.16□□□□□ -1.74
SKA3Q8IX90 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC4.16□□□□□ -1.74
SKA3Q8IX90 AC104662.3-202ENST00000507794 4055 ntTSL 2 BASIC4.16□□□□□ -1.74
SKA3Q8IX90 OR4N5-201ENST00000333629 927 ntAPPRIS P1 BASIC4.16□□□□□ -1.74
SKA3Q8IX90 MIR195-201ENST00000385194 87 ntBASIC4.16□□□□□ -1.74
SKA3Q8IX90 AL589655.1-201ENST00000405398 482 ntBASIC4.16□□□□□ -1.74
SKA3Q8IX90 RPL23AP48-201ENST00000406913 488 ntBASIC4.16□□□□□ -1.74
SKA3Q8IX90 RSU1P3-201ENST00000412878 835 ntBASIC4.16□□□□□ -1.74
SKA3Q8IX90 AC093084.1-201ENST00000424233 687 ntBASIC4.16□□□□□ -1.74
SKA3Q8IX90 FAM204CP-201ENST00000424489 642 ntBASIC4.16□□□□□ -1.74
SKA3Q8IX90 IPMKP1-201ENST00000425988 855 ntBASIC4.16□□□□□ -1.74
SKA3Q8IX90 MKLN1-204ENST00000429546 572 ntTSL 4 BASIC4.16□□□□□ -1.74
SKA3Q8IX90 TEX41-205ENST00000431734 529 ntTSL 4 BASIC4.16□□□□□ -1.74
SKA3Q8IX90 AC007563.3-201ENST00000433233 371 ntBASIC4.16□□□□□ -1.74
SKA3Q8IX90 TPTE2P1-203ENST00000434100 514 ntTSL 3 BASIC4.16□□□□□ -1.74
SKA3Q8IX90 NMNAT1P2-201ENST00000435192 860 ntBASIC4.16□□□□□ -1.74
SKA3Q8IX90 KCND3-IT1-201ENST00000439736 376 ntTSL 3 BASIC4.16□□□□□ -1.74
SKA3Q8IX90 Z99127.2-201ENST00000441426 334 ntBASIC4.16□□□□□ -1.74
SKA3Q8IX90 MRPL48P1-201ENST00000445390 636 ntBASIC4.16□□□□□ -1.74
SKA3Q8IX90 CYP4F62P-203ENST00000455215 552 ntTSL 4 BASIC4.16□□□□□ -1.74
SKA3Q8IX90 AP002345.1-201ENST00000456493 928 ntBASIC4.16□□□□□ -1.74
SKA3Q8IX90 AC092324.1-201ENST00000468671 324 ntBASIC4.16□□□□□ -1.74
SKA3Q8IX90 CREM-226ENST00000469949 721 ntTSL 3 BASIC4.16□□□□□ -1.74
SKA3Q8IX90 AC098851.1-201ENST00000476561 570 ntTSL 4 BASIC4.16□□□□□ -1.74
SKA3Q8IX90 OR52A4P-202ENST00000481634 799 ntBASIC4.16□□□□□ -1.74
SKA3Q8IX90 TFEC-208ENST00000484212 1245 ntTSL 2 BASIC4.16□□□□□ -1.74
SKA3Q8IX90 RPS6P4-201ENST00000494693 758 ntBASIC4.16□□□□□ -1.74
SKA3Q8IX90 AC025445.1-201ENST00000502728 300 ntBASIC4.16□□□□□ -1.74
SKA3Q8IX90 SCARNA22-201ENST00000503991 125 ntBASIC4.16□□□□□ -1.74
SKA3Q8IX90 LINC02236-201ENST00000508881 552 ntTSL 4 BASIC4.16□□□□□ -1.74
SKA3Q8IX90 C18orf32-202ENST00000582392 714 ntAPPRIS P1 TSL 3 BASIC4.16□□□□□ -1.74
SKA3Q8IX90 MIR4737-201ENST00000583979 81 ntBASIC4.16□□□□□ -1.74
SKA3Q8IX90 AC008894.1-201ENST00000587693 367 ntTSL 5 BASIC4.16□□□□□ -1.74
SKA3Q8IX90 AP001120.2-201ENST00000589395 296 ntTSL 3 BASIC4.16□□□□□ -1.74
SKA3Q8IX90 BMS1P7-201ENST00000602440 1052 ntBASIC4.16□□□□□ -1.74
SKA3Q8IX90 AC024940.4-201ENST00000605507 246 ntBASIC4.16□□□□□ -1.74
SKA3Q8IX90 AL356056.1-205ENST00000608904 651 ntTSL 5 BASIC4.16□□□□□ -1.74
SKA3Q8IX90 AL121873.1-201ENST00000616013 524 ntBASIC4.16□□□□□ -1.74
SKA3Q8IX90 AC074276.2-201ENST00000619891 348 ntBASIC4.16□□□□□ -1.74
SKA3Q8IX90 AC019080.5-201ENST00000624891 757 ntBASIC4.16□□□□□ -1.74
SKA3Q8IX90 PRKCQ-AS1-218ENST00000624974 1132 ntTSL 5 BASIC4.16□□□□□ -1.74
SKA3Q8IX90 AC107398.4-201ENST00000635489 765 ntTSL 2 BASIC4.16□□□□□ -1.74
SKA3Q8IX90 AC107021.2-201ENST00000567714 2095 ntBASIC4.16□□□□□ -1.74
SKA3Q8IX90 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC4.16□□□□□ -1.74
SKA3Q8IX90 ALS2CR12-201ENST00000286190 1769 ntAPPRIS P3 TSL 1 (best) BASIC4.16□□□□□ -1.74
SKA3Q8IX90 AC139713.2-209ENST00000509873 1303 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
SKA3Q8IX90 MAPK10-263ENST00000641052 4307 ntBASIC4.16□□□□□ -1.74
SKA3Q8IX90 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC4.16□□□□□ -1.74
SKA3Q8IX90 AL359922.3-201ENST00000624779 1670 ntBASIC4.16□□□□□ -1.74
SKA3Q8IX90 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
SKA3Q8IX90 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC4.15□□□□□ -1.74
SKA3Q8IX90 TNFAIP8-207ENST00000513374 1385 ntTSL 2 BASIC4.15□□□□□ -1.74
SKA3Q8IX90 KC6-201ENST00000592302 1713 ntTSL 1 (best) BASIC4.15□□□□□ -1.74
SKA3Q8IX90 MAPK10-303ENST00000641324 3959 ntBASIC4.15□□□□□ -1.74
SKA3Q8IX90 SDAD1P1-202ENST00000524156 2051 ntBASIC4.15□□□□□ -1.74
SKA3Q8IX90 AL121950.1-201ENST00000624993 2077 ntBASIC4.15□□□□□ -1.74
SKA3Q8IX90 TLK1-212ENST00000521943 2605 ntTSL 2 BASIC4.15□□□□□ -1.74
SKA3Q8IX90 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC4.15□□□□□ -1.74
SKA3Q8IX90 ENOX2-202ENST00000370927 3788 ntTSL 1 (best) BASIC4.15□□□□□ -1.74
SKA3Q8IX90 SOS1-203ENST00000426016 8517 ntAPPRIS P2 TSL 2 BASIC4.15□□□□□ -1.75
SKA3Q8IX90 IGKV5-2-201ENST00000390244 408 ntAPPRIS P1 BASIC4.15□□□□□ -1.75
SKA3Q8IX90 AL590762.2-201ENST00000395798 571 ntBASIC4.15□□□□□ -1.75
SKA3Q8IX90 RN7SKP100-201ENST00000411258 284 ntBASIC4.15□□□□□ -1.75
SKA3Q8IX90 AC006369.1-201ENST00000419425 548 ntTSL 3 BASIC4.15□□□□□ -1.75
SKA3Q8IX90 GAPDHP49-201ENST00000421421 961 ntBASIC4.15□□□□□ -1.75
SKA3Q8IX90 RPS27P18-201ENST00000431701 247 ntBASIC4.15□□□□□ -1.75
SKA3Q8IX90 MRPS33P4-201ENST00000434892 317 ntBASIC4.15□□□□□ -1.75
SKA3Q8IX90 VN1R48P-201ENST00000448149 1036 ntBASIC4.15□□□□□ -1.75
SKA3Q8IX90 LINC01767-201ENST00000451914 545 ntTSL 2 BASIC4.15□□□□□ -1.75
SKA3Q8IX90 AC079168.2-201ENST00000453977 416 ntBASIC4.15□□□□□ -1.75
SKA3Q8IX90 AC006967.1-201ENST00000467608 589 ntBASIC4.15□□□□□ -1.75
SKA3Q8IX90 AC083982.1-201ENST00000485679 344 ntBASIC4.15□□□□□ -1.75
SKA3Q8IX90 UBA52P3-201ENST00000491303 382 ntBASIC4.15□□□□□ -1.75
SKA3Q8IX90 LINC01455-201ENST00000503167 561 ntTSL 4 BASIC4.15□□□□□ -1.75
SKA3Q8IX90 OR7H2P-201ENST00000513483 306 ntBASIC4.15□□□□□ -1.75
SKA3Q8IX90 ACTR6P1-201ENST00000514311 1104 ntBASIC4.15□□□□□ -1.75
SKA3Q8IX90 FOXD1-AS1-201ENST00000514661 424 ntTSL 3 BASIC4.15□□□□□ -1.75
SKA3Q8IX90 AC246817.2-206ENST00000520570 582 ntTSL 4 BASIC4.15□□□□□ -1.75
SKA3Q8IX90 AC090281.1-201ENST00000523019 276 ntBASIC4.15□□□□□ -1.75
SKA3Q8IX90 AC109635.6-201ENST00000525487 1113 ntBASIC4.15□□□□□ -1.75
SKA3Q8IX90 AC079917.1-201ENST00000527828 584 ntTSL 3 BASIC4.15□□□□□ -1.75
SKA3Q8IX90 OR5D15P-201ENST00000531671 942 ntBASIC4.15□□□□□ -1.75
SKA3Q8IX90 AC079917.1-202ENST00000534059 625 ntTSL 3 BASIC4.15□□□□□ -1.75
SKA3Q8IX90 LINC02301-201ENST00000553760 773 ntTSL 3 BASIC4.15□□□□□ -1.75
SKA3Q8IX90 AL133485.1-201ENST00000555966 392 ntTSL 2 BASIC4.15□□□□□ -1.75
SKA3Q8IX90 ATP5J2P6-201ENST00000565203 266 ntBASIC4.15□□□□□ -1.75
SKA3Q8IX90 CD24P2-201ENST00000565486 219 ntBASIC4.15□□□□□ -1.75
SKA3Q8IX90 UBE2FP2-201ENST00000566646 462 ntBASIC4.15□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 76.7 ms