Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 AC110743.1-201ENST00000584870 478 ntBASIC2.59□□□□□ -2
HSPG2P98160 AC093484.5-201ENST00000585048 304 ntTSL 3 BASIC2.59□□□□□ -2
HSPG2P98160 UTP15-208ENST00000543251 4922 ntTSL 2 BASIC2.59□□□□□ -2
HSPG2P98160 MYH15-201ENST00000273353 7074 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -2
HSPG2P98160 OR6Y1-203ENST00000641622 5128 ntAPPRIS P1 BASIC2.59□□□□□ -2
HSPG2P98160 ALB-202ENST00000401494 1659 ntTSL 5 BASIC2.59□□□□□ -2
HSPG2P98160 RBPJ-202ENST00000342320 5761 ntAPPRIS P3 TSL 1 (best) BASIC2.59□□□□□ -2
HSPG2P98160 GRIA2-202ENST00000296526 5621 ntAPPRIS P3 TSL 1 (best) BASIC2.59□□□□□ -2
HSPG2P98160 SMC2-201ENST00000286398 5992 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -2
HSPG2P98160 DPPA3-201ENST00000345088 1079 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
HSPG2P98160 COX7B2-201ENST00000355591 542 ntAPPRIS P2 TSL 1 (best) BASIC2.58□□□□□ -2
HSPG2P98160 IARS-201ENST00000375627 697 ntTSL 3 BASIC2.58□□□□□ -2
HSPG2P98160 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC2.58□□□□□ -2
HSPG2P98160 AL359378.1-201ENST00000439891 400 ntTSL 5 BASIC2.58□□□□□ -2
HSPG2P98160 PSAT1P4-201ENST00000466500 526 ntBASIC2.58□□□□□ -2
HSPG2P98160 RPS27AP1-201ENST00000475545 471 ntBASIC2.58□□□□□ -2
HSPG2P98160 LINC02466-202ENST00000509105 653 ntTSL 3 BASIC2.58□□□□□ -2
HSPG2P98160 POLA1-201ENST00000379059 5440 ntAPPRIS P3 TSL 1 (best) BASIC2.58□□□□□ -2
HSPG2P98160 POLA1-206ENST00000611764 5434 ntAPPRIS ALT2 TSL 5 BASIC2.58□□□□□ -2
HSPG2P98160 ADAM5-202ENST00000399789 1942 ntBASIC2.58□□□□□ -2
HSPG2P98160 CACNA1E-204ENST00000367567 14757 ntAPPRIS ALT2 TSL 5 BASIC2.58□□□□□ -2
HSPG2P98160 CACNB4-273ENST00000638091 4061 ntTSL 5 BASIC2.58□□□□□ -2
HSPG2P98160 DSPP-201ENST00000282478 4281 ntAPPRIS P1 TSL 5 BASIC2.58□□□□□ -2
HSPG2P98160 AGO1-201ENST00000373204 13708 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
HSPG2P98160 LINC02141-201ENST00000568279 6586 ntTSL 1 (best) BASIC2.58□□□□□ -2
HSPG2P98160 FREM1-202ENST00000380880 7324 ntAPPRIS P1 TSL 5 BASIC2.58□□□□□ -2
HSPG2P98160 PROX1-202ENST00000366958 8240 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
HSPG2P98160 PLCXD3-201ENST00000328457 7538 ntAPPRIS P1 TSL 5 BASIC2.58□□□□□ -2
HSPG2P98160 TDRD3-204ENST00000377894 2484 ntTSL 2 BASIC2.58□□□□□ -2
HSPG2P98160 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC2.58□□□□□ -2
HSPG2P98160 RPL7P58-201ENST00000402913 758 ntBASIC2.58□□□□□ -2
HSPG2P98160 RHEBP2-201ENST00000450289 600 ntBASIC2.58□□□□□ -2
HSPG2P98160 AC093801.1-201ENST00000504017 307 ntTSL 2 BASIC2.58□□□□□ -2
HSPG2P98160 AC098799.3-201ENST00000506095 438 ntBASIC2.58□□□□□ -2
HSPG2P98160 AC120057.2-201ENST00000571520 271 ntBASIC2.58□□□□□ -2
HSPG2P98160 AC025175.1-201ENST00000606482 759 ntBASIC2.58□□□□□ -2
HSPG2P98160 SZT2-210ENST00000634258 11045 ntAPPRIS ALT2 TSL 5 BASIC2.58□□□□□ -2
HSPG2P98160 BICRAL-202ENST00000394168 6515 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
HSPG2P98160 ZNF148-201ENST00000360647 9651 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
HSPG2P98160 PPP1R12B-216ENST00000608999 15248 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
HSPG2P98160 OR6C4-202ENST00000641569 5141 ntAPPRIS P1 BASIC2.58□□□□□ -2
HSPG2P98160 ZNF573-202ENST00000357309 2124 ntTSL 5 BASIC2.58□□□□□ -2
HSPG2P98160 DCP2-201ENST00000389063 8947 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
HSPG2P98160 AC003035.1-201ENST00000391359 544 ntTSL 3 BASIC2.58□□□□□ -2
HSPG2P98160 AF240627.1-201ENST00000416002 879 ntTSL 3 BASIC2.58□□□□□ -2
HSPG2P98160 MYCBP2-AS1-201ENST00000422231 519 ntTSL 3 BASIC2.58□□□□□ -2
HSPG2P98160 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC2.58□□□□□ -2
HSPG2P98160 RPS4XP4-201ENST00000443195 763 ntBASIC2.58□□□□□ -2
HSPG2P98160 EEF1A1P25-201ENST00000495704 1267 ntBASIC2.58□□□□□ -2
HSPG2P98160 AC083923.2-203ENST00000520512 372 ntTSL 3 BASIC2.58□□□□□ -2
HSPG2P98160 MGAM-208ENST00000549489 6525 ntTSL 1 (best) BASIC2.58□□□□□ -2
HSPG2P98160 SLC4A7-206ENST00000428386 7385 ntTSL 1 (best) BASIC2.58□□□□□ -2
HSPG2P98160 CELF2-203ENST00000416382 6894 ntTSL 1 (best) BASIC2.58□□□□□ -2
HSPG2P98160 ZC3H7A-202ENST00000396516 3845 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
HSPG2P98160 KLRC1-201ENST00000347831 1332 ntAPPRIS ALT2 TSL 1 (best) BASIC2.58□□□□□ -2
HSPG2P98160 DZIP3-201ENST00000361582 5350 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
HSPG2P98160 FOCAD-201ENST00000338382 5765 ntAPPRIS P1 TSL 5 BASIC2.58□□□□□ -2
HSPG2P98160 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
HSPG2P98160 AL592494.1-201ENST00000437523 309 ntTSL 5 BASIC2.58□□□□□ -2
HSPG2P98160 RPL23AP81-201ENST00000455252 467 ntBASIC2.58□□□□□ -2
HSPG2P98160 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC2.58□□□□□ -2
HSPG2P98160 KRT19P6-201ENST00000510983 209 ntBASIC2.58□□□□□ -2
HSPG2P98160 AC118465.1-201ENST00000513820 1271 ntBASIC2.58□□□□□ -2
HSPG2P98160 AC105180.1-201ENST00000523317 426 ntTSL 3 BASIC2.58□□□□□ -2
HSPG2P98160 AC006064.5-201ENST00000541782 248 ntBASIC2.58□□□□□ -2
HSPG2P98160 BNIP3P10-201ENST00000605360 577 ntBASIC2.58□□□□□ -2
HSPG2P98160 U3.45-201ENST00000607547 219 ntBASIC2.58□□□□□ -2
HSPG2P98160 AC107419.1-202ENST00000608735 1081 ntTSL 3 BASIC2.58□□□□□ -2
HSPG2P98160 MIR6868-201ENST00000611215 58 ntBASIC2.58□□□□□ -2
HSPG2P98160 MIR6715A-201ENST00000615929 79 ntBASIC2.58□□□□□ -2
HSPG2P98160 CLASP1-203ENST00000409078 8002 ntAPPRIS P1 TSL 5 BASIC2.58□□□□□ -2
HSPG2P98160 LRRK2-201ENST00000298910 9158 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
HSPG2P98160 RAD51AP1-202ENST00000352618 2113 ntAPPRIS P3 TSL 1 (best) BASIC2.58□□□□□ -2
HSPG2P98160 AL049781.1-201ENST00000623195 3585 ntBASIC2.58□□□□□ -2
HSPG2P98160 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
HSPG2P98160 FBXW2-205ENST00000608872 9138 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
HSPG2P98160 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC2.57□□□□□ -2
HSPG2P98160 RAB23-201ENST00000317483 2546 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
HSPG2P98160 GPATCH2-202ENST00000366935 5851 ntAPPRIS P1 TSL 2 BASIC2.57□□□□□ -2
HSPG2P98160 ATP5A1P2-201ENST00000412323 255 ntBASIC2.57□□□□□ -2
HSPG2P98160 AC108032.1-201ENST00000416706 207 ntBASIC2.57□□□□□ -2
HSPG2P98160 LINC01923-201ENST00000443261 592 ntTSL 5 BASIC2.57□□□□□ -2
HSPG2P98160 TTTY23B-202ENST00000451467 512 ntTSL 1 (best) BASIC2.57□□□□□ -2
HSPG2P98160 TTTY23-201ENST00000452889 512 ntTSL 1 (best) BASIC2.57□□□□□ -2
HSPG2P98160 EIF4BP1-201ENST00000554881 351 ntBASIC2.57□□□□□ -2
HSPG2P98160 RPL23AP97-201ENST00000568955 471 ntBASIC2.57□□□□□ -2
HSPG2P98160 MIR4660-201ENST00000583549 74 ntBASIC2.57□□□□□ -2
HSPG2P98160 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC2.57□□□□□ -2
HSPG2P98160 SH3D19-210ENST00000514152 5107 ntAPPRIS ALT1 TSL 2 BASIC2.57□□□□□ -2
HSPG2P98160 LIN7C-202ENST00000524596 4290 ntTSL 1 (best) BASIC2.57□□□□□ -2
HSPG2P98160 HNF4G-203ENST00000396423 4209 ntAPPRIS P3 TSL 1 (best) BASIC2.57□□□□□ -2
HSPG2P98160 ARHGAP42P3-201ENST00000443989 2508 ntBASIC2.57□□□□□ -2
HSPG2P98160 APOOL-203ENST00000622540 6466 ntTSL 5 BASIC2.57□□□□□ -2
HSPG2P98160 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
HSPG2P98160 DMD-202ENST00000343523 5623 ntTSL 5 BASIC2.57□□□□□ -2
HSPG2P98160 AL442128.2-201ENST00000620246 1824 ntBASIC2.57□□□□□ -2
HSPG2P98160 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC2.57□□□□□ -2
HSPG2P98160 ZNF813-201ENST00000396403 6151 ntAPPRIS P1 TSL 3 BASIC2.57□□□□□ -2
HSPG2P98160 ERBB4-202ENST00000342788 12136 ntAPPRIS P3 TSL 1 (best) BASIC2.57□□□□□ -2
HSPG2P98160 KCNJ1-202ENST00000324036 2614 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 94 ms