Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 RNA5SP513-201ENST00000364648 118 ntBASIC4.64□□□□□ -1.67
COL4A4P53420 MIR3065-201ENST00000390137 79 ntBASIC4.64□□□□□ -1.67
COL4A4P53420 RPS20P14-201ENST00000412545 360 ntBASIC4.64□□□□□ -1.67
COL4A4P53420 LINC02542-201ENST00000418567 822 ntTSL 5 BASIC4.64□□□□□ -1.67
COL4A4P53420 AL121878.1-201ENST00000418638 859 ntBASIC4.64□□□□□ -1.67
COL4A4P53420 UBTFL3-201ENST00000418934 1024 ntBASIC4.64□□□□□ -1.67
COL4A4P53420 AC114814.2-201ENST00000419195 485 ntBASIC4.64□□□□□ -1.67
COL4A4P53420 ARL4AP4-201ENST00000434170 518 ntBASIC4.64□□□□□ -1.67
COL4A4P53420 SKINT1L-203ENST00000453388 749 ntTSL 5 BASIC4.64□□□□□ -1.67
COL4A4P53420 RPS20P4-201ENST00000461659 355 ntBASIC4.64□□□□□ -1.67
COL4A4P53420 UBTFL6-201ENST00000477929 1024 ntBASIC4.64□□□□□ -1.67
COL4A4P53420 AC110768.1-201ENST00000509222 400 ntBASIC4.64□□□□□ -1.67
COL4A4P53420 RERG-AS1-201ENST00000541243 337 ntTSL 2 BASIC4.64□□□□□ -1.67
COL4A4P53420 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC4.64□□□□□ -1.67
COL4A4P53420 AC076968.1-201ENST00000566418 429 ntTSL 5 BASIC4.64□□□□□ -1.67
COL4A4P53420 RN7SL339P-201ENST00000580597 296 ntBASIC4.64□□□□□ -1.67
COL4A4P53420 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
COL4A4P53420 FILIP1-201ENST00000237172 4580 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
COL4A4P53420 SLC17A1-204ENST00000476801 1704 ntAPPRIS P1 TSL 2 BASIC4.63□□□□□ -1.67
COL4A4P53420 CHST9-203ENST00000618847 11388 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
COL4A4P53420 NFIB-211ENST00000606230 2311 ntTSL 5 BASIC4.63□□□□□ -1.67
COL4A4P53420 THRB-203ENST00000396671 7506 ntAPPRIS P2 TSL 5 BASIC4.63□□□□□ -1.67
COL4A4P53420 PIGN-242ENST00000640145 4505 ntAPPRIS P1 TSL 5 BASIC4.63□□□□□ -1.67
COL4A4P53420 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC4.63□□□□□ -1.67
COL4A4P53420 ALS2CR12-202ENST00000392257 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC4.63□□□□□ -1.67
COL4A4P53420 TRAV36DV7-201ENST00000390463 356 ntAPPRIS P1 BASIC4.63□□□□□ -1.67
COL4A4P53420 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC4.63□□□□□ -1.67
COL4A4P53420 AL035246.1-201ENST00000433554 1255 ntBASIC4.63□□□□□ -1.67
COL4A4P53420 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC4.63□□□□□ -1.67
COL4A4P53420 RPS26P2-201ENST00000440331 348 ntBASIC4.63□□□□□ -1.67
COL4A4P53420 TMSB4X-204ENST00000451311 628 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
COL4A4P53420 DDX39BP2-208ENST00000453923 258 ntBASIC4.63□□□□□ -1.67
COL4A4P53420 LINC02045-201ENST00000460324 679 ntTSL 3 BASIC4.63□□□□□ -1.67
COL4A4P53420 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC4.63□□□□□ -1.67
COL4A4P53420 TRDN-204ENST00000542443 1294 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
COL4A4P53420 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC4.63□□□□□ -1.67
COL4A4P53420 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC4.63□□□□□ -1.67
COL4A4P53420 RAPGEF2-201ENST00000264431 6949 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
COL4A4P53420 ADGRG2-205ENST00000357991 4661 ntAPPRIS P3 TSL 1 (best) BASIC4.63□□□□□ -1.67
COL4A4P53420 ETV1-208ENST00000420159 6231 ntTSL 2 BASIC4.63□□□□□ -1.67
COL4A4P53420 ZNF431-201ENST00000311048 13894 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
COL4A4P53420 AC079915.1-201ENST00000584382 2780 ntTSL 2 BASIC4.63□□□□□ -1.67
COL4A4P53420 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC4.63□□□□□ -1.67
COL4A4P53420 CASC19-204ENST00000641001 2055 ntBASIC4.63□□□□□ -1.67
COL4A4P53420 NSD1-201ENST00000347982 7688 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
COL4A4P53420 WDR63-203ENST00000370596 2905 ntAPPRIS ALT2 TSL 5 BASIC4.63□□□□□ -1.67
COL4A4P53420 RABGAP1L-208ENST00000392064 6282 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
COL4A4P53420 SAMD13-201ENST00000370668 1403 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
COL4A4P53420 HMBOX1-202ENST00000355231 1694 ntTSL 5 BASIC4.62□□□□□ -1.67
COL4A4P53420 MYO5A-201ENST00000356338 11971 ntAPPRIS ALT1 TSL 1 (best) BASIC4.62□□□□□ -1.67
COL4A4P53420 MED13-201ENST00000397786 10465 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
COL4A4P53420 OR5AN1-203ENST00000641998 7647 ntAPPRIS P1 BASIC4.62□□□□□ -1.67
COL4A4P53420 PHLPP2-201ENST00000393524 8467 ntTSL 2 BASIC4.62□□□□□ -1.67
COL4A4P53420 BBX-204ENST00000406780 3674 ntAPPRIS P3 TSL 5 BASIC4.62□□□□□ -1.67
COL4A4P53420 RN7SKP159-201ENST00000410657 292 ntBASIC4.62□□□□□ -1.67
COL4A4P53420 TPT1P2-201ENST00000413105 503 ntBASIC4.62□□□□□ -1.67
COL4A4P53420 RPL6P29-201ENST00000414863 865 ntBASIC4.62□□□□□ -1.67
COL4A4P53420 AC068533.1-201ENST00000418542 415 ntBASIC4.62□□□□□ -1.67
COL4A4P53420 MYCBP2-AS1-201ENST00000422231 519 ntTSL 3 BASIC4.62□□□□□ -1.67
COL4A4P53420 PCBP1-AS1-224ENST00000429599 1045 ntTSL 5 BASIC4.62□□□□□ -1.67
COL4A4P53420 AL157400.3-201ENST00000449882 1298 ntTSL 5 BASIC4.62□□□□□ -1.67
COL4A4P53420 SETP4-201ENST00000455717 868 ntBASIC4.62□□□□□ -1.67
COL4A4P53420 RNA5SP103-201ENST00000459503 118 ntBASIC4.62□□□□□ -1.67
COL4A4P53420 NADK2-AS1-201ENST00000501794 720 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
COL4A4P53420 AC097478.1-202ENST00000508021 567 ntTSL 4 BASIC4.62□□□□□ -1.67
COL4A4P53420 AC026403.1-201ENST00000518938 295 ntBASIC4.62□□□□□ -1.67
COL4A4P53420 CYCSP28-201ENST00000534284 321 ntBASIC4.62□□□□□ -1.67
COL4A4P53420 AC004801.3-201ENST00000547602 962 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
COL4A4P53420 LINC02394-201ENST00000549140 543 ntTSL 4 BASIC4.62□□□□□ -1.67
COL4A4P53420 AC129492.2-201ENST00000577807 517 ntTSL 3 BASIC4.62□□□□□ -1.67
COL4A4P53420 AC011477.2-201ENST00000590697 921 ntTSL 2 BASIC4.62□□□□□ -1.67
COL4A4P53420 CR392039.5-201ENST00000623201 510 ntBASIC4.62□□□□□ -1.67
COL4A4P53420 AC015908.5-201ENST00000623289 343 ntBASIC4.62□□□□□ -1.67
COL4A4P53420 AC007546.2-201ENST00000623996 360 ntBASIC4.62□□□□□ -1.67
COL4A4P53420 VIPR1-AS1-223ENST00000627073 451 ntTSL 5 BASIC4.62□□□□□ -1.67
COL4A4P53420 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC4.62□□□□□ -1.67
COL4A4P53420 AC032011.1-201ENST00000611703 1549 ntBASIC4.62□□□□□ -1.67
COL4A4P53420 RFTN2-201ENST00000295049 5827 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
COL4A4P53420 ZNF534-204ENST00000433050 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC4.62□□□□□ -1.67
COL4A4P53420 BRWD3-201ENST00000373275 11381 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
COL4A4P53420 NAV3-201ENST00000397909 9821 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
COL4A4P53420 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
COL4A4P53420 AL136164.3-201ENST00000624429 3978 ntBASIC4.62□□□□□ -1.67
COL4A4P53420 CDC16-202ENST00000252458 1991 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
COL4A4P53420 AL603750.1-201ENST00000624216 1717 ntBASIC4.62□□□□□ -1.67
COL4A4P53420 AP005435.3-201ENST00000531260 3198 ntBASIC4.62□□□□□ -1.67
COL4A4P53420 EIF3M-208ENST00000531120 5051 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
COL4A4P53420 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC4.62□□□□□ -1.67
COL4A4P53420 RAG2-201ENST00000311485 2388 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
COL4A4P53420 LMOD2-202ENST00000458573 2346 ntAPPRIS P1 TSL 2 BASIC4.62□□□□□ -1.67
COL4A4P53420 ADGRL2-204ENST00000370715 5585 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
COL4A4P53420 AC092162.3-201ENST00000624511 1624 ntBASIC4.62□□□□□ -1.67
COL4A4P53420 DNAH8-201ENST00000327475 14360 ntAPPRIS P2 TSL 5 BASIC4.62□□□□□ -1.67
COL4A4P53420 RASAL2-203ENST00000462775 14453 ntAPPRIS ALT2 TSL 1 (best) BASIC4.62□□□□□ -1.67
COL4A4P53420 EIF1AY-201ENST00000361365 1390 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
COL4A4P53420 GCSAML-201ENST00000366488 3820 ntAPPRIS P3 TSL 1 (best) BASIC4.62□□□□□ -1.67
COL4A4P53420 RPGRIP1-201ENST00000382933 2004 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
COL4A4P53420 MYBPC1-205ENST00000536007 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC4.61□□□□□ -1.67
COL4A4P53420 MYBPC1-206ENST00000541119 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC4.61□□□□□ -1.67
COL4A4P53420 AP002512.4-202ENST00000641599 4530 ntBASIC4.61□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 76.7 ms