Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC4.3□□□□□ -1.72
COL6A3P12111 PLEKHM3-202ENST00000427836 9807 ntAPPRIS P1 TSL 5 BASIC4.3□□□□□ -1.72
COL6A3P12111 ZNF518B-201ENST00000326756 6894 ntAPPRIS P1 TSL 3 BASIC4.3□□□□□ -1.72
COL6A3P12111 ST8SIA5-203ENST00000538168 13761 ntTSL 2 BASIC4.3□□□□□ -1.72
COL6A3P12111 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC4.3□□□□□ -1.72
COL6A3P12111 FOXP2-220ENST00000634411 4065 ntTSL 5 BASIC4.3□□□□□ -1.72
COL6A3P12111 PSG1-201ENST00000244296 2276 ntAPPRIS P3 TSL 1 (best) BASIC4.3□□□□□ -1.72
COL6A3P12111 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC4.3□□□□□ -1.72
COL6A3P12111 RNA5SP247-201ENST00000411181 105 ntBASIC4.3□□□□□ -1.72
COL6A3P12111 LINC01923-203ENST00000456248 2528 ntTSL 2 BASIC4.3□□□□□ -1.72
COL6A3P12111 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC4.3□□□□□ -1.72
COL6A3P12111 RPL21P11-201ENST00000461458 483 ntBASIC4.3□□□□□ -1.72
COL6A3P12111 SEPT7P9-201ENST00000475691 413 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
COL6A3P12111 AC080162.1-201ENST00000480764 491 ntTSL 3 BASIC4.3□□□□□ -1.72
COL6A3P12111 AC136777.2-201ENST00000522979 358 ntBASIC4.3□□□□□ -1.72
COL6A3P12111 A2ML1-AS1-201ENST00000537288 452 ntTSL 3 BASIC4.3□□□□□ -1.72
COL6A3P12111 AC079598.1-201ENST00000548691 554 ntTSL 4 BASIC4.3□□□□□ -1.72
COL6A3P12111 BTBD10P1-201ENST00000549824 1352 ntBASIC4.3□□□□□ -1.72
COL6A3P12111 RPL21P7-201ENST00000557463 483 ntBASIC4.3□□□□□ -1.72
COL6A3P12111 MIR5187-201ENST00000583479 76 ntBASIC4.3□□□□□ -1.72
COL6A3P12111 KCNN3-201ENST00000271915 13033 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
COL6A3P12111 TEK-205ENST00000615002 4666 ntTSL 5 BASIC4.3□□□□□ -1.72
COL6A3P12111 KIAA1841-205ENST00000453873 4294 ntAPPRIS P1 TSL 5 BASIC4.3□□□□□ -1.72
COL6A3P12111 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC4.3□□□□□ -1.72
COL6A3P12111 CEP250-202ENST00000397527 15703 ntAPPRIS P1 TSL 5 BASIC4.3□□□□□ -1.72
COL6A3P12111 AC139769.1-204ENST00000472297 1931 ntBASIC4.3□□□□□ -1.72
COL6A3P12111 INPP4B-201ENST00000262992 3741 ntAPPRIS P1 TSL 5 BASIC4.3□□□□□ -1.72
COL6A3P12111 CTNND1-201ENST00000358694 6135 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
COL6A3P12111 GHR-211ENST00000618088 4491 ntAPPRIS P1 TSL 5 BASIC4.3□□□□□ -1.72
COL6A3P12111 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
COL6A3P12111 OR6K3-202ENST00000368146 996 ntBASIC4.3□□□□□ -1.72
COL6A3P12111 AL356968.2-201ENST00000412769 1257 ntBASIC4.3□□□□□ -1.72
COL6A3P12111 RPL21P43-201ENST00000425440 472 ntBASIC4.3□□□□□ -1.72
COL6A3P12111 AL359265.1-201ENST00000440296 795 ntBASIC4.3□□□□□ -1.72
COL6A3P12111 CYCSP35-201ENST00000451978 304 ntBASIC4.3□□□□□ -1.72
COL6A3P12111 MTND6P32-201ENST00000457611 483 ntBASIC4.3□□□□□ -1.72
COL6A3P12111 YPEL5P3-201ENST00000547227 352 ntBASIC4.3□□□□□ -1.72
COL6A3P12111 MIR5684-201ENST00000585074 65 ntBASIC4.3□□□□□ -1.72
COL6A3P12111 AC073218.2-202ENST00000605962 617 ntTSL 5 BASIC4.3□□□□□ -1.72
COL6A3P12111 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
COL6A3P12111 ROR1-204ENST00000545203 5362 ntAPPRIS ALT2 TSL 5 BASIC4.3□□□□□ -1.72
COL6A3P12111 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC4.29□□□□□ -1.72
COL6A3P12111 PAK3-203ENST00000372007 8940 ntAPPRIS P3 TSL 1 (best) BASIC4.29□□□□□ -1.72
COL6A3P12111 AADACL2-201ENST00000356517 1487 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
COL6A3P12111 OR6Y1-203ENST00000641622 5128 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
COL6A3P12111 AC073136.1-201ENST00000449426 2884 ntBASIC4.29□□□□□ -1.72
COL6A3P12111 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC4.29□□□□□ -1.72
COL6A3P12111 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC4.29□□□□□ -1.72
COL6A3P12111 Y_RNA.676-201ENST00000516393 96 ntBASIC4.29□□□□□ -1.72
COL6A3P12111 IGHV3-32-201ENST00000519182 355 ntBASIC4.29□□□□□ -1.72
COL6A3P12111 OR7E13P-201ENST00000526052 910 ntBASIC4.29□□□□□ -1.72
COL6A3P12111 HID1-AS1-201ENST00000577295 815 ntTSL 2 BASIC4.29□□□□□ -1.72
COL6A3P12111 ZBTB21-201ENST00000310826 7449 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
COL6A3P12111 NF1-202ENST00000358273 12425 ntAPPRIS ALT1 TSL 1 (best) BASIC4.29□□□□□ -1.72
COL6A3P12111 AC116096.1-201ENST00000566804 2314 ntBASIC4.29□□□□□ -1.72
COL6A3P12111 GRAMD1B-207ENST00000529750 7723 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
COL6A3P12111 ZNF230-201ENST00000429154 4115 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
COL6A3P12111 MTRNR2L10-201ENST00000545075 1530 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
COL6A3P12111 SCN8A-201ENST00000354534 11556 ntAPPRIS P3 TSL 1 (best) BASIC4.29□□□□□ -1.72
COL6A3P12111 ZNF845-201ENST00000458035 4311 ntAPPRIS P1 TSL 4 BASIC4.29□□□□□ -1.72
COL6A3P12111 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
COL6A3P12111 OR10J6P-201ENST00000289731 930 ntBASIC4.29□□□□□ -1.72
COL6A3P12111 RPL23AP57-201ENST00000332361 466 ntBASIC4.29□□□□□ -1.72
COL6A3P12111 TRAV10-201ENST00000390432 379 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
COL6A3P12111 RPS29P4-201ENST00000414733 161 ntBASIC4.29□□□□□ -1.72
COL6A3P12111 AL035423.1-201ENST00000420331 213 ntBASIC4.29□□□□□ -1.72
COL6A3P12111 AC018832.1-201ENST00000428171 566 ntTSL 4 BASIC4.29□□□□□ -1.72
COL6A3P12111 ALMS1-IT1-201ENST00000441587 2107 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
COL6A3P12111 AGGF1P3-201ENST00000493675 1213 ntBASIC4.29□□□□□ -1.72
COL6A3P12111 AC108467.1-201ENST00000515623 672 ntTSL 3 BASIC4.29□□□□□ -1.72
COL6A3P12111 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC4.29□□□□□ -1.72
COL6A3P12111 AC015726.1-201ENST00000602353 681 ntBASIC4.29□□□□□ -1.72
COL6A3P12111 RPL12P50-201ENST00000603116 116 ntBASIC4.29□□□□□ -1.72
COL6A3P12111 AC026786.2-201ENST00000606110 392 ntTSL 3 BASIC4.29□□□□□ -1.72
COL6A3P12111 AC092902.2-219ENST00000608488 822 ntTSL 5 BASIC4.29□□□□□ -1.72
COL6A3P12111 FTO-206ENST00000471389 11766 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
COL6A3P12111 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
COL6A3P12111 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
COL6A3P12111 FOCAD-201ENST00000338382 5765 ntAPPRIS P1 TSL 5 BASIC4.29□□□□□ -1.72
COL6A3P12111 NAV2-202ENST00000360655 10667 ntAPPRIS ALT2 TSL 1 (best) BASIC4.29□□□□□ -1.72
COL6A3P12111 ARF4-206ENST00000489843 1360 ntTSL 3 BASIC4.29□□□□□ -1.72
COL6A3P12111 NBPF12-202ENST00000579935 5035 ntAPPRIS ALT2 TSL 5 BASIC4.29□□□□□ -1.72
COL6A3P12111 LCOR-201ENST00000286067 4542 ntBASIC4.29□□□□□ -1.72
COL6A3P12111 RNU6-304P-201ENST00000364855 107 ntBASIC4.28□□□□□ -1.72
COL6A3P12111 CDKL4-202ENST00000395035 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC4.28□□□□□ -1.72
COL6A3P12111 RN7SKP222-201ENST00000410651 315 ntBASIC4.28□□□□□ -1.72
COL6A3P12111 AC092162.1-201ENST00000432828 434 ntBASIC4.28□□□□□ -1.72
COL6A3P12111 AK4P6-201ENST00000505168 528 ntBASIC4.28□□□□□ -1.72
COL6A3P12111 AC025470.2-201ENST00000506106 897 ntTSL 2 BASIC4.28□□□□□ -1.72
COL6A3P12111 AC018752.1-201ENST00000507813 206 ntTSL 5 BASIC4.28□□□□□ -1.72
COL6A3P12111 AC124068.1-201ENST00000563131 678 ntBASIC4.28□□□□□ -1.72
COL6A3P12111 AC010401.3-201ENST00000576600 582 ntTSL 4 BASIC4.28□□□□□ -1.72
COL6A3P12111 MIR6133-201ENST00000617057 108 ntBASIC4.28□□□□□ -1.72
COL6A3P12111 MYO16-201ENST00000251041 3492 ntTSL 5 BASIC4.28□□□□□ -1.72
COL6A3P12111 SLC30A7-203ENST00000370112 7898 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
COL6A3P12111 PDE4DIP-206ENST00000369356 8307 ntAPPRIS P4 TSL 1 (best) BASIC4.28□□□□□ -1.72
COL6A3P12111 CROT-204ENST00000442291 1993 ntTSL 5 BASIC4.28□□□□□ -1.72
COL6A3P12111 SLC35A5-206ENST00000492406 4399 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
COL6A3P12111 ZNF567-203ENST00000585696 3734 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
COL6A3P12111 MAPK10-349ENST00000641767 3661 ntBASIC4.28□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 74.7 ms