Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 RNF138P2-201ENST00000603490 592 ntBASIC4.42□□□□□ -1.7
HOXC4P09017 AC133552.5-201ENST00000604266 540 ntBASIC4.42□□□□□ -1.7
HOXC4P09017 AL121890.2-201ENST00000617644 465 ntBASIC4.42□□□□□ -1.7
HOXC4P09017 RNU6-368P-201ENST00000620928 107 ntBASIC4.42□□□□□ -1.7
HOXC4P09017 RNU6-538P-201ENST00000622329 107 ntBASIC4.42□□□□□ -1.7
HOXC4P09017 AC244517.5-203ENST00000624778 517 ntTSL 2 BASIC4.42□□□□□ -1.7
HOXC4P09017 SLC9C1-201ENST00000305815 4172 ntAPPRIS P3 TSL 2 BASIC4.42□□□□□ -1.7
HOXC4P09017 SYCP1-210ENST00000618516 3109 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
HOXC4P09017 AP002512.4-201ENST00000641310 4672 ntAPPRIS P1 BASIC4.42□□□□□ -1.7
HOXC4P09017 STON1-GTF2A1L-203ENST00000402114 3790 ntTSL 2 BASIC4.42□□□□□ -1.7
HOXC4P09017 AC019197.1-201ENST00000638199 3611 ntTSL 5 BASIC4.42□□□□□ -1.7
HOXC4P09017 ASB5-201ENST00000296525 3031 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
HOXC4P09017 PMCHL2-201ENST00000415808 1841 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
HOXC4P09017 CCDC91-201ENST00000381259 2334 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
HOXC4P09017 LIX1-201ENST00000274382 4026 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
HOXC4P09017 MYB-226ENST00000528774 2277 ntAPPRIS ALT1 TSL 1 (best) BASIC4.41□□□□□ -1.7
HOXC4P09017 MYBPC1-203ENST00000392934 3644 ntAPPRIS ALT2 TSL 2 BASIC4.41□□□□□ -1.7
HOXC4P09017 SMC2-AS1-201ENST00000603487 7020 ntTSL 2 BASIC4.41□□□□□ -1.7
HOXC4P09017 OR52B1P-201ENST00000316506 909 ntBASIC4.41□□□□□ -1.7
HOXC4P09017 TRAV36DV7-201ENST00000390463 356 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
HOXC4P09017 RPS20P25-201ENST00000412447 352 ntBASIC4.41□□□□□ -1.7
HOXC4P09017 AC098872.1-201ENST00000413304 543 ntTSL 3 BASIC4.41□□□□□ -1.7
HOXC4P09017 DAB1-AS1-201ENST00000416598 1262 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
HOXC4P09017 AC062016.2-201ENST00000420950 676 ntBASIC4.41□□□□□ -1.7
HOXC4P09017 Z74021.1-201ENST00000423610 407 ntBASIC4.41□□□□□ -1.7
HOXC4P09017 RPL21P91-201ENST00000429231 479 ntBASIC4.41□□□□□ -1.7
HOXC4P09017 AC241644.1-201ENST00000431525 446 ntTSL 3 BASIC4.41□□□□□ -1.7
HOXC4P09017 RPS26P4-201ENST00000431743 355 ntBASIC4.41□□□□□ -1.7
HOXC4P09017 AC073143.1-201ENST00000436316 395 ntBASIC4.41□□□□□ -1.7
HOXC4P09017 LINC01350-201ENST00000436955 642 ntTSL 3 BASIC4.41□□□□□ -1.7
HOXC4P09017 AC006037.1-201ENST00000437967 287 ntTSL 5 BASIC4.41□□□□□ -1.7
HOXC4P09017 AC012594.1-271ENST00000438635 736 ntTSL 3 BASIC4.41□□□□□ -1.7
HOXC4P09017 AC114495.1-201ENST00000441274 436 ntBASIC4.41□□□□□ -1.7
HOXC4P09017 SKINT1L-203ENST00000453388 749 ntTSL 5 BASIC4.41□□□□□ -1.7
HOXC4P09017 DHFRP3-201ENST00000455595 559 ntBASIC4.41□□□□□ -1.7
HOXC4P09017 AC107015.1-201ENST00000466902 747 ntBASIC4.41□□□□□ -1.7
HOXC4P09017 CREM-228ENST00000473940 1182 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
HOXC4P09017 RN7SKP122-201ENST00000515923 296 ntBASIC4.41□□□□□ -1.7
HOXC4P09017 RNA5SP497-201ENST00000516081 97 ntBASIC4.41□□□□□ -1.7
HOXC4P09017 AC012613.1-201ENST00000522685 387 ntTSL 2 BASIC4.41□□□□□ -1.7
HOXC4P09017 AF117829.1-210ENST00000523859 696 ntTSL 3 BASIC4.41□□□□□ -1.7
HOXC4P09017 LONRF1-203ENST00000525024 841 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
HOXC4P09017 AC004160.1-210ENST00000599875 689 ntTSL 5 BASIC4.41□□□□□ -1.7
HOXC4P09017 AC079587.1-201ENST00000603846 277 ntBASIC4.41□□□□□ -1.7
HOXC4P09017 uc_338.13-201ENST00000618243 179 ntBASIC4.41□□□□□ -1.7
HOXC4P09017 MIR6758-201ENST00000620653 63 ntBASIC4.41□□□□□ -1.7
HOXC4P09017 AC079298.2-201ENST00000623885 459 ntBASIC4.41□□□□□ -1.7
HOXC4P09017 OR2M2-202ENST00000641211 1229 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
HOXC4P09017 OR2M2-203ENST00000641836 1151 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
HOXC4P09017 CDH17-201ENST00000027335 3693 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
HOXC4P09017 ZNF705D-202ENST00000400085 3377 ntAPPRIS P1 TSL 5 BASIC4.41□□□□□ -1.7
HOXC4P09017 C6orf10-207ENST00000533191 2170 ntAPPRIS ALT2 TSL 1 (best) BASIC4.41□□□□□ -1.7
HOXC4P09017 AL606537.1-201ENST00000607258 2011 ntBASIC4.41□□□□□ -1.7
HOXC4P09017 ECHDC1-222ENST00000531967 2585 ntAPPRIS ALT2 TSL 2 BASIC4.41□□□□□ -1.7
HOXC4P09017 ESCO1-204ENST00000622333 1850 ntTSL 2 BASIC4.41□□□□□ -1.7
HOXC4P09017 DTNA-202ENST00000283365 6522 ntTSL 5 BASIC4.41□□□□□ -1.7
HOXC4P09017 PDE10A-201ENST00000366882 8233 ntAPPRIS P3 TSL 5 BASIC4.41□□□□□ -1.7
HOXC4P09017 EEF1A1-211ENST00000615060 3508 ntTSL 5 BASIC4.41□□□□□ -1.7
HOXC4P09017 WDR72-202ENST00000396328 7507 ntAPPRIS P2 TSL 1 (best) BASIC4.41□□□□□ -1.7
HOXC4P09017 CSPP1-203ENST00000519668 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC4.41□□□□□ -1.7
HOXC4P09017 MUC12-202ENST00000379442 16737 ntAPPRIS ALT2 TSL 5 BASIC4.4□□□□□ -1.7
HOXC4P09017 MPHOSPH9-211ENST00000541076 6136 ntAPPRIS ALT2 TSL 5 BASIC4.4□□□□□ -1.7
HOXC4P09017 SYT14P1-202ENST00000600441 1448 ntBASIC4.4□□□□□ -1.7
HOXC4P09017 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC4.4□□□□□ -1.7
HOXC4P09017 AK9-204ENST00000424296 6326 ntAPPRIS P1 TSL 5 BASIC4.4□□□□□ -1.7
HOXC4P09017 LINC01821-201ENST00000419786 1084 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
HOXC4P09017 NPM1P26-201ENST00000426339 738 ntBASIC4.4□□□□□ -1.71
HOXC4P09017 AL132765.1-201ENST00000434165 553 ntBASIC4.4□□□□□ -1.71
HOXC4P09017 ARL4AP4-201ENST00000434170 518 ntBASIC4.4□□□□□ -1.71
HOXC4P09017 FTH1P16-201ENST00000435241 552 ntBASIC4.4□□□□□ -1.71
HOXC4P09017 AL139327.2-202ENST00000437057 400 ntTSL 3 BASIC4.4□□□□□ -1.71
HOXC4P09017 FHP1-201ENST00000442741 703 ntBASIC4.4□□□□□ -1.71
HOXC4P09017 BIRC6-AS1-201ENST00000455572 697 ntTSL 3 BASIC4.4□□□□□ -1.71
HOXC4P09017 AC092905.1-201ENST00000467527 949 ntBASIC4.4□□□□□ -1.71
HOXC4P09017 AC111000.4-201ENST00000504301 569 ntTSL 5 BASIC4.4□□□□□ -1.71
HOXC4P09017 ZBED3-AS1-209ENST00000512213 681 ntTSL 3 BASIC4.4□□□□□ -1.71
HOXC4P09017 AC133634.1-201ENST00000517695 566 ntTSL 3 BASIC4.4□□□□□ -1.71
HOXC4P09017 AC016074.1-201ENST00000518339 636 ntTSL 2 BASIC4.4□□□□□ -1.71
HOXC4P09017 AC004801.3-201ENST00000547602 962 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
HOXC4P09017 AL355075.3-201ENST00000554678 492 ntTSL 5 BASIC4.4□□□□□ -1.71
HOXC4P09017 PARP1P2-201ENST00000556806 195 ntBASIC4.4□□□□□ -1.71
HOXC4P09017 LINC01533-202ENST00000588694 632 ntTSL 2 BASIC4.4□□□□□ -1.71
HOXC4P09017 AC008966.2-201ENST00000606157 453 ntBASIC4.4□□□□□ -1.71
HOXC4P09017 SNORA35B-201ENST00000607417 129 ntBASIC4.4□□□□□ -1.71
HOXC4P09017 AC097505.1-201ENST00000610199 565 ntBASIC4.4□□□□□ -1.71
HOXC4P09017 AC005962.2-201ENST00000611427 652 ntBASIC4.4□□□□□ -1.71
HOXC4P09017 MIR6716-201ENST00000613413 80 ntBASIC4.4□□□□□ -1.71
HOXC4P09017 MLECP1-201ENST00000615893 709 ntBASIC4.4□□□□□ -1.71
HOXC4P09017 OR2L1P-202ENST00000641567 1023 ntBASIC4.4□□□□□ -1.71
HOXC4P09017 ADGRL2-204ENST00000370715 5585 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
HOXC4P09017 EIF2AP4-201ENST00000424793 1781 ntBASIC4.4□□□□□ -1.71
HOXC4P09017 KCNJ1-202ENST00000324036 2614 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
HOXC4P09017 RLIMP2-201ENST00000427891 1563 ntBASIC4.4□□□□□ -1.71
HOXC4P09017 MTUS1-203ENST00000381861 3996 ntAPPRIS P4 TSL 2 BASIC4.39□□□□□ -1.71
HOXC4P09017 WDR89-201ENST00000267522 1687 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
HOXC4P09017 AC139769.1-204ENST00000472297 1931 ntBASIC4.39□□□□□ -1.71
HOXC4P09017 AC099792.1-203ENST00000634701 2183 ntTSL 5 BASIC4.39□□□□□ -1.71
HOXC4P09017 CEP192-203ENST00000506447 7960 ntAPPRIS P2 TSL 5 BASIC4.39□□□□□ -1.71
HOXC4P09017 RPL32P3-201ENST00000359025 275 ntBASIC4.39□□□□□ -1.71
HOXC4P09017 C1orf185-201ENST00000371759 915 ntAPPRIS P2 TSL 2 BASIC4.39□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 125.3 ms