Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 OR7A5-201ENST00000322301 4216 ntAPPRIS P1 BASIC5.88□□□□□ -1.47
TRIM39Q9HCM9 NAT1-201ENST00000307719 1815 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
TRIM39Q9HCM9 CC2D2B-201ENST00000344386 1809 ntAPPRIS P3 TSL 1 (best) BASIC5.88□□□□□ -1.47
TRIM39Q9HCM9 LINC00240-204ENST00000607607 5607 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
TRIM39Q9HCM9 LINC00507-201ENST00000540882 1935 ntTSL 5 BASIC5.87□□□□□ -1.47
TRIM39Q9HCM9 ZNF571-202ENST00000358744 2049 ntAPPRIS P1 TSL 2 BASIC5.87□□□□□ -1.47
TRIM39Q9HCM9 ZBTB25-201ENST00000394715 2094 ntAPPRIS P1 TSL 2 BASIC5.87□□□□□ -1.47
TRIM39Q9HCM9 GTF2IP4-201ENST00000453092 2054 ntBASIC5.87□□□□□ -1.47
TRIM39Q9HCM9 CCR2-201ENST00000292301 2671 ntTSL 5 BASIC5.87□□□□□ -1.47
TRIM39Q9HCM9 KIAA0586-203ENST00000423743 5339 ntAPPRIS ALT2 TSL 1 (best) BASIC5.87□□□□□ -1.47
TRIM39Q9HCM9 GNG2-212ENST00000556752 3424 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
TRIM39Q9HCM9 SPA17-201ENST00000227135 853 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
TRIM39Q9HCM9 STARD6-201ENST00000307844 663 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
TRIM39Q9HCM9 BPY2-201ENST00000331070 1206 ntAPPRIS P5 TSL 1 (best) BASIC5.87□□□□□ -1.47
TRIM39Q9HCM9 RNA5SP211-201ENST00000365516 117 ntBASIC5.87□□□□□ -1.47
TRIM39Q9HCM9 CGA-201ENST00000369582 729 ntTSL 5 BASIC5.87□□□□□ -1.47
TRIM39Q9HCM9 BPY2C-201ENST00000382287 1206 ntAPPRIS P5 TSL 1 (best) BASIC5.87□□□□□ -1.47
TRIM39Q9HCM9 BPY2B-201ENST00000382392 1206 ntAPPRIS P5 TSL 1 (best) BASIC5.87□□□□□ -1.47
TRIM39Q9HCM9 C6orf48-208ENST00000395788 815 ntAPPRIS P1 TSL 2 BASIC5.87□□□□□ -1.47
TRIM39Q9HCM9 MIR1284-201ENST00000408337 120 ntBASIC5.87□□□□□ -1.47
TRIM39Q9HCM9 RN7SKP273-201ENST00000411392 314 ntBASIC5.87□□□□□ -1.47
TRIM39Q9HCM9 RPS26P38-201ENST00000414476 348 ntBASIC5.87□□□□□ -1.47
TRIM39Q9HCM9 RPS4XP5-201ENST00000419038 768 ntBASIC5.87□□□□□ -1.47
TRIM39Q9HCM9 AL035660.1-201ENST00000422041 222 ntBASIC5.87□□□□□ -1.47
TRIM39Q9HCM9 LINC01760-201ENST00000423410 382 ntTSL 2 BASIC5.87□□□□□ -1.47
TRIM39Q9HCM9 DLGAP5P1-201ENST00000430307 464 ntBASIC5.87□□□□□ -1.47
TRIM39Q9HCM9 RPS26P40-201ENST00000435209 294 ntBASIC5.87□□□□□ -1.47
TRIM39Q9HCM9 AL353706.1-201ENST00000436728 494 ntBASIC5.87□□□□□ -1.47
TRIM39Q9HCM9 LINC01350-201ENST00000436955 642 ntTSL 3 BASIC5.87□□□□□ -1.47
TRIM39Q9HCM9 VAV3-AS1-201ENST00000438318 619 ntTSL 2 BASIC5.87□□□□□ -1.47
TRIM39Q9HCM9 AC004865.1-201ENST00000442276 1003 ntBASIC5.87□□□□□ -1.47
TRIM39Q9HCM9 AL731568.1-201ENST00000445111 434 ntTSL 2 BASIC5.87□□□□□ -1.47
TRIM39Q9HCM9 AL009050.1-201ENST00000445278 426 ntTSL 3 BASIC5.87□□□□□ -1.47
TRIM39Q9HCM9 LINC01809-201ENST00000448431 303 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
TRIM39Q9HCM9 GAS5-218ENST00000448718 565 ntTSL 2 BASIC5.87□□□□□ -1.47
TRIM39Q9HCM9 AC005229.2-201ENST00000456995 399 ntBASIC5.87□□□□□ -1.47
TRIM39Q9HCM9 AL445687.2-201ENST00000458156 728 ntBASIC5.87□□□□□ -1.47
TRIM39Q9HCM9 RPS4XP12-201ENST00000461747 709 ntBASIC5.87□□□□□ -1.47
TRIM39Q9HCM9 SEMA6A-AS2-201ENST00000508766 482 ntTSL 3 BASIC5.87□□□□□ -1.47
TRIM39Q9HCM9 ANAPC15-205ENST00000535503 734 ntAPPRIS P3 TSL 3 BASIC5.87□□□□□ -1.47
TRIM39Q9HCM9 AP002373.1-201ENST00000544347 729 ntAPPRIS P1 TSL 3 BASIC5.87□□□□□ -1.47
TRIM39Q9HCM9 PCED1B-AS1-203ENST00000547626 420 ntTSL 2 BASIC5.87□□□□□ -1.47
TRIM39Q9HCM9 LINC02406-201ENST00000553029 546 ntTSL 3 BASIC5.87□□□□□ -1.47
TRIM39Q9HCM9 AL391156.1-201ENST00000554965 554 ntBASIC5.87□□□□□ -1.47
TRIM39Q9HCM9 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC5.87□□□□□ -1.47
TRIM39Q9HCM9 AC138915.2-201ENST00000569776 97 ntBASIC5.87□□□□□ -1.47
TRIM39Q9HCM9 U95743.1-201ENST00000573369 1001 ntTSL 5 BASIC5.87□□□□□ -1.47
TRIM39Q9HCM9 AC130371.1-201ENST00000577023 230 ntTSL 5 BASIC5.87□□□□□ -1.47
TRIM39Q9HCM9 AP005262.1-201ENST00000582646 997 ntBASIC5.87□□□□□ -1.47
TRIM39Q9HCM9 AP001011.1-201ENST00000583546 690 ntTSL 3 BASIC5.87□□□□□ -1.47
TRIM39Q9HCM9 TEX26-AS1-204ENST00000585582 853 ntTSL 5 BASIC5.87□□□□□ -1.47
TRIM39Q9HCM9 AC090771.2-201ENST00000588794 571 ntTSL 3 BASIC5.87□□□□□ -1.47
TRIM39Q9HCM9 AC115085.1-201ENST00000588924 229 ntBASIC5.87□□□□□ -1.47
TRIM39Q9HCM9 RSL24D1P11-201ENST00000591045 491 ntBASIC5.87□□□□□ -1.47
TRIM39Q9HCM9 AC004987.4-201ENST00000603383 338 ntBASIC5.87□□□□□ -1.47
TRIM39Q9HCM9 AC145423.1-201ENST00000605712 336 ntBASIC5.87□□□□□ -1.47
TRIM39Q9HCM9 AC103591.3-201ENST00000608684 209 ntBASIC5.87□□□□□ -1.47
TRIM39Q9HCM9 AP000254.1-201ENST00000609934 520 ntBASIC5.87□□□□□ -1.47
TRIM39Q9HCM9 PROX1-AS1-219ENST00000610094 791 ntTSL 5 BASIC5.87□□□□□ -1.47
TRIM39Q9HCM9 Metazoa_SRP.70-201ENST00000612622 273 ntBASIC5.87□□□□□ -1.47
TRIM39Q9HCM9 PLCE1-AS2-211ENST00000613585 542 ntTSL 5 BASIC5.87□□□□□ -1.47
TRIM39Q9HCM9 AC243654.3-201ENST00000617427 735 ntTSL 5 BASIC5.87□□□□□ -1.47
TRIM39Q9HCM9 AL356121.2-201ENST00000624715 780 ntBASIC5.87□□□□□ -1.47
TRIM39Q9HCM9 AC099063.3-201ENST00000642066 185 ntBASIC5.87□□□□□ -1.47
TRIM39Q9HCM9 TRIM51GP-201ENST00000534741 1350 ntBASIC5.87□□□□□ -1.47
TRIM39Q9HCM9 OPRM1-206ENST00000419506 1402 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
TRIM39Q9HCM9 CXCL11-201ENST00000306621 1606 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
TRIM39Q9HCM9 RAP1GDS1-202ENST00000339360 2092 ntAPPRIS ALT1 TSL 1 (best) BASIC5.87□□□□□ -1.47
TRIM39Q9HCM9 CASC19-204ENST00000641001 2055 ntBASIC5.87□□□□□ -1.47
TRIM39Q9HCM9 MYB-239ENST00000534121 2238 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
TRIM39Q9HCM9 TRIM22-201ENST00000379965 2989 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
TRIM39Q9HCM9 KLHL5-202ENST00000261426 3300 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
TRIM39Q9HCM9 ZNF699-203ENST00000591998 3358 ntAPPRIS P1 TSL 5 BASIC5.87□□□□□ -1.47
TRIM39Q9HCM9 NSD1-204ENST00000439151 12892 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
TRIM39Q9HCM9 RFC1-201ENST00000349703 4859 ntAPPRIS P3 TSL 1 (best) BASIC5.87□□□□□ -1.47
TRIM39Q9HCM9 SCAPER-207ENST00000563290 5028 ntAPPRIS P1 TSL 5 BASIC5.87□□□□□ -1.47
TRIM39Q9HCM9 ARHGAP20-206ENST00000533353 6066 ntAPPRIS ALT2 TSL 1 (best) BASIC5.86□□□□□ -1.47
TRIM39Q9HCM9 DDX3Y-201ENST00000336079 4445 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
TRIM39Q9HCM9 MAK-203ENST00000474039 3859 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
TRIM39Q9HCM9 PREPL-216ENST00000541738 6049 ntTSL 2 BASIC5.86□□□□□ -1.47
TRIM39Q9HCM9 MTND5P24-201ENST00000438892 1767 ntBASIC5.86□□□□□ -1.47
TRIM39Q9HCM9 AC068775.1-202ENST00000538173 1602 ntAPPRIS P1 BASIC5.86□□□□□ -1.47
TRIM39Q9HCM9 PLCZ1-206ENST00000538330 1612 ntTSL 2 BASIC5.86□□□□□ -1.47
TRIM39Q9HCM9 ODAM-201ENST00000396094 1319 ntAPPRIS P1 TSL 5 BASIC5.86□□□□□ -1.47
TRIM39Q9HCM9 ZC2HC1B-201ENST00000237275 1002 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
TRIM39Q9HCM9 OR2B6-201ENST00000244623 942 ntAPPRIS P1 BASIC5.86□□□□□ -1.47
TRIM39Q9HCM9 TAS2R16-201ENST00000249284 997 ntAPPRIS P1 BASIC5.86□□□□□ -1.47
TRIM39Q9HCM9 CLPS-201ENST00000259938 526 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
TRIM39Q9HCM9 OR13C4-201ENST00000277216 957 ntAPPRIS P1 BASIC5.86□□□□□ -1.47
TRIM39Q9HCM9 AL672167.1-206ENST00000356293 943 ntBASIC5.86□□□□□ -1.47
TRIM39Q9HCM9 RNU6-115P-201ENST00000364310 107 ntBASIC5.86□□□□□ -1.47
TRIM39Q9HCM9 MIR1203-201ENST00000408812 85 ntBASIC5.86□□□□□ -1.47
TRIM39Q9HCM9 RPL23AP39-201ENST00000415533 405 ntBASIC5.86□□□□□ -1.47
TRIM39Q9HCM9 FO393401.1-203ENST00000416260 486 ntTSL 5 BASIC5.86□□□□□ -1.47
TRIM39Q9HCM9 LINC01198-201ENST00000416521 500 ntTSL 3 BASIC5.86□□□□□ -1.47
TRIM39Q9HCM9 BOLA3P4-201ENST00000418151 400 ntBASIC5.86□□□□□ -1.47
TRIM39Q9HCM9 AL390243.1-201ENST00000422038 708 ntTSL 2 BASIC5.86□□□□□ -1.47
TRIM39Q9HCM9 ACTR3P2-201ENST00000439585 1257 ntBASIC5.86□□□□□ -1.47
TRIM39Q9HCM9 COX6CP2-201ENST00000444980 225 ntBASIC5.86□□□□□ -1.47
TRIM39Q9HCM9 NDUFA5P7-201ENST00000452914 242 ntBASIC5.86□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 131.5 ms