Protein–RNA interactions for Protein: Q6P499

NIPAL3, NIPA-like protein 3, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NIPAL3Q6P499 GTF2IP5-201ENST00000414608 731 ntBASIC4.34□□□□□ -1.71
NIPAL3Q6P499 AC012506.4-201ENST00000421563 541 ntTSL 4 BASIC4.34□□□□□ -1.71
NIPAL3Q6P499 AC104170.2-201ENST00000424246 678 ntTSL 3 BASIC4.34□□□□□ -1.71
NIPAL3Q6P499 RPL12P34-201ENST00000424532 479 ntBASIC4.34□□□□□ -1.71
NIPAL3Q6P499 NPM1P24-201ENST00000428039 894 ntBASIC4.34□□□□□ -1.71
NIPAL3Q6P499 AL354863.1-202ENST00000431695 494 ntTSL 5 BASIC4.34□□□□□ -1.71
NIPAL3Q6P499 TMEM196-204ENST00000433641 768 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
NIPAL3Q6P499 MTCO1P52-201ENST00000433928 531 ntBASIC4.34□□□□□ -1.71
NIPAL3Q6P499 RPL7P11-201ENST00000437586 658 ntBASIC4.34□□□□□ -1.71
NIPAL3Q6P499 ZBTB40-IT1-201ENST00000438551 273 ntTSL 3 BASIC4.34□□□□□ -1.71
NIPAL3Q6P499 RPL34P26-201ENST00000445636 354 ntBASIC4.34□□□□□ -1.71
NIPAL3Q6P499 SLC25A18P1-201ENST00000449385 454 ntBASIC4.34□□□□□ -1.71
NIPAL3Q6P499 LINC01825-201ENST00000452381 850 ntTSL 3 BASIC4.34□□□□□ -1.71
NIPAL3Q6P499 B4GALT4-AS1-201ENST00000470790 544 ntTSL 5 BASIC4.34□□□□□ -1.71
NIPAL3Q6P499 FAM107B-218ENST00000479731 570 ntAPPRIS P1 TSL 3 BASIC4.34□□□□□ -1.71
NIPAL3Q6P499 AL136537.1-202ENST00000501725 430 ntTSL 3 BASIC4.34□□□□□ -1.71
NIPAL3Q6P499 ATP6V1G1P6-201ENST00000504007 334 ntBASIC4.34□□□□□ -1.71
NIPAL3Q6P499 AC091826.2-201ENST00000504034 412 ntTSL 3 BASIC4.34□□□□□ -1.71
NIPAL3Q6P499 BTF3P13-201ENST00000513224 490 ntBASIC4.34□□□□□ -1.71
NIPAL3Q6P499 IGHVIII-2-1-201ENST00000518843 291 ntBASIC4.34□□□□□ -1.71
NIPAL3Q6P499 AP000676.2-201ENST00000529711 301 ntBASIC4.34□□□□□ -1.71
NIPAL3Q6P499 PARPBP-212ENST00000543784 992 ntTSL 2 BASIC4.34□□□□□ -1.71
NIPAL3Q6P499 AC095350.2-201ENST00000544034 201 ntTSL 5 BASIC4.34□□□□□ -1.71
NIPAL3Q6P499 TNFSF11-205ENST00000544862 818 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
NIPAL3Q6P499 AC016987.1-201ENST00000558587 499 ntTSL 2 BASIC4.34□□□□□ -1.71
NIPAL3Q6P499 AC051619.2-201ENST00000559063 397 ntBASIC4.34□□□□□ -1.71
NIPAL3Q6P499 AC020659.1-204ENST00000562920 400 ntTSL 3 BASIC4.34□□□□□ -1.71
NIPAL3Q6P499 SATB1-AS1-222ENST00000600177 751 ntTSL 5 BASIC4.34□□□□□ -1.71
NIPAL3Q6P499 AL021707.7-201ENST00000607991 416 ntBASIC4.34□□□□□ -1.71
NIPAL3Q6P499 AL096803.3-201ENST00000609032 532 ntBASIC4.34□□□□□ -1.71
NIPAL3Q6P499 INTS6-AS1-226ENST00000610018 672 ntTSL 5 BASIC4.34□□□□□ -1.71
NIPAL3Q6P499 AC055764.2-201ENST00000610089 670 ntBASIC4.34□□□□□ -1.71
NIPAL3Q6P499 AP004607.9-201ENST00000618202 316 ntBASIC4.34□□□□□ -1.71
NIPAL3Q6P499 AC112694.2-201ENST00000623697 768 ntBASIC4.34□□□□□ -1.71
NIPAL3Q6P499 SATB1-AS1-259ENST00000629477 853 ntTSL 5 BASIC4.34□□□□□ -1.71
NIPAL3Q6P499 CASC19-222ENST00000641321 1173 ntBASIC4.34□□□□□ -1.71
NIPAL3Q6P499 AC131971.1-201ENST00000332881 1482 ntBASIC4.34□□□□□ -1.71
NIPAL3Q6P499 SLC9B1-202ENST00000394789 1735 ntAPPRIS ALT2 TSL 1 (best) BASIC4.34□□□□□ -1.71
NIPAL3Q6P499 AC114546.3-201ENST00000623582 1734 ntBASIC4.34□□□□□ -1.71
NIPAL3Q6P499 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC4.34□□□□□ -1.71
NIPAL3Q6P499 ZNF534-204ENST00000433050 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC4.34□□□□□ -1.71
NIPAL3Q6P499 AC008505.1-201ENST00000637582 2025 ntTSL 5 BASIC4.34□□□□□ -1.71
NIPAL3Q6P499 ANAPC1P1-201ENST00000426186 2145 ntBASIC4.34□□□□□ -1.71
NIPAL3Q6P499 EEF1A1-211ENST00000615060 3508 ntTSL 5 BASIC4.34□□□□□ -1.72
NIPAL3Q6P499 R3HDM1-203ENST00000409606 3673 ntAPPRIS ALT1 TSL 2 BASIC4.34□□□□□ -1.72
NIPAL3Q6P499 ADNP-201ENST00000349014 5963 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.72
NIPAL3Q6P499 MTRR-202ENST00000440940 3215 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
NIPAL3Q6P499 AC011900.1-201ENST00000446838 2999 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
NIPAL3Q6P499 DNAJC9-AS1-204ENST00000440197 2865 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
NIPAL3Q6P499 BCLAF1P2-201ENST00000624956 2609 ntBASIC4.33□□□□□ -1.72
NIPAL3Q6P499 IRF5P1-201ENST00000504852 2164 ntBASIC4.33□□□□□ -1.72
NIPAL3Q6P499 DDX18P3-201ENST00000404856 2007 ntBASIC4.33□□□□□ -1.72
NIPAL3Q6P499 C9orf153-204ENST00000613665 1738 ntAPPRIS P2 TSL 2 BASIC4.33□□□□□ -1.72
NIPAL3Q6P499 OR10AG1-201ENST00000312345 1016 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
NIPAL3Q6P499 SNORA51.8-201ENST00000384234 132 ntBASIC4.33□□□□□ -1.72
NIPAL3Q6P499 RNU6-452P-201ENST00000384406 107 ntBASIC4.33□□□□□ -1.72
NIPAL3Q6P499 RN7SKP199-201ENST00000410325 305 ntBASIC4.33□□□□□ -1.72
NIPAL3Q6P499 LINC00364-201ENST00000415120 611 ntTSL 3 BASIC4.33□□□□□ -1.72
NIPAL3Q6P499 AC021035.1-201ENST00000421597 427 ntTSL 3 BASIC4.33□□□□□ -1.72
NIPAL3Q6P499 OR2AM1P-201ENST00000422137 422 ntBASIC4.33□□□□□ -1.72
NIPAL3Q6P499 AC009965.2-201ENST00000425328 970 ntBASIC4.33□□□□□ -1.72
NIPAL3Q6P499 AL354714.4-201ENST00000427339 575 ntTSL 3 BASIC4.33□□□□□ -1.72
NIPAL3Q6P499 AC093414.1-201ENST00000434712 514 ntBASIC4.33□□□□□ -1.72
NIPAL3Q6P499 ARPP21-218ENST00000438071 1103 ntTSL 3 BASIC4.33□□□□□ -1.72
NIPAL3Q6P499 AL713851.1-201ENST00000438753 918 ntTSL 5 BASIC4.33□□□□□ -1.72
NIPAL3Q6P499 AC104651.2-201ENST00000447549 528 ntBASIC4.33□□□□□ -1.72
NIPAL3Q6P499 AL513343.1-201ENST00000451818 792 ntBASIC4.33□□□□□ -1.72
NIPAL3Q6P499 AC234781.3-201ENST00000452540 973 ntBASIC4.33□□□□□ -1.72
NIPAL3Q6P499 RN7SL329P-201ENST00000467740 299 ntBASIC4.33□□□□□ -1.72
NIPAL3Q6P499 RPL32P9-201ENST00000487963 407 ntBASIC4.33□□□□□ -1.72
NIPAL3Q6P499 UBA52P3-201ENST00000491303 382 ntBASIC4.33□□□□□ -1.72
NIPAL3Q6P499 RN7SL558P-201ENST00000497468 299 ntBASIC4.33□□□□□ -1.72
NIPAL3Q6P499 AC008728.1-201ENST00000512730 691 ntTSL 2 BASIC4.33□□□□□ -1.72
NIPAL3Q6P499 AC013644.1-202ENST00000523166 499 ntTSL 2 BASIC4.33□□□□□ -1.72
NIPAL3Q6P499 ZNF84-212ENST00000542874 540 ntTSL 5 BASIC4.33□□□□□ -1.72
NIPAL3Q6P499 NOVA1-AS1-203ENST00000552101 468 ntTSL 3 BASIC4.33□□□□□ -1.72
NIPAL3Q6P499 AL049839.1-201ENST00000556151 657 ntBASIC4.33□□□□□ -1.72
NIPAL3Q6P499 LINS1-207ENST00000560133 1196 ntTSL 2 BASIC4.33□□□□□ -1.72
NIPAL3Q6P499 AC012409.1-201ENST00000560176 358 ntTSL 3 BASIC4.33□□□□□ -1.72
NIPAL3Q6P499 LINC02188-201ENST00000562064 550 ntTSL 4 BASIC4.33□□□□□ -1.72
NIPAL3Q6P499 AC007599.2-201ENST00000573040 493 ntTSL 5 BASIC4.33□□□□□ -1.72
NIPAL3Q6P499 AC092364.1-202ENST00000593824 565 ntTSL 4 BASIC4.33□□□□□ -1.72
NIPAL3Q6P499 AC020910.3-201ENST00000603701 874 ntBASIC4.33□□□□□ -1.72
NIPAL3Q6P499 AC123768.3-201ENST00000613733 523 ntTSL 3 BASIC4.33□□□□□ -1.72
NIPAL3Q6P499 AL022401.1-201ENST00000619498 108 ntBASIC4.33□□□□□ -1.72
NIPAL3Q6P499 AL118508.4-201ENST00000624142 1176 ntBASIC4.33□□□□□ -1.72
NIPAL3Q6P499 SATB1-AS1-263ENST00000630022 622 ntTSL 5 BASIC4.33□□□□□ -1.72
NIPAL3Q6P499 METTL8-218ENST00000638989 876 ntTSL 5 BASIC4.33□□□□□ -1.72
NIPAL3Q6P499 NUP205-201ENST00000285968 6266 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
NIPAL3Q6P499 UBE3A-203ENST00000428984 2986 ntAPPRIS P3 TSL 5 BASIC4.33□□□□□ -1.72
NIPAL3Q6P499 CENPE-208ENST00000611174 8260 ntTSL 5 BASIC4.33□□□□□ -1.72
NIPAL3Q6P499 SLMAP-206ENST00000428312 4132 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
NIPAL3Q6P499 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC4.33□□□□□ -1.72
NIPAL3Q6P499 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
NIPAL3Q6P499 RAG2-201ENST00000311485 2388 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
NIPAL3Q6P499 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
NIPAL3Q6P499 PSG1-204ENST00000436291 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC4.33□□□□□ -1.72
NIPAL3Q6P499 INPP4B-215ENST00000509777 4334 ntTSL 5 BASIC4.32□□□□□ -1.72
NIPAL3Q6P499 OR6K3-201ENST00000368145 1844 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
NIPAL3Q6P499 OR2L3-202ENST00000641161 2830 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 103 ms