Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 ARPP19-208ENST00000566423 5362 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
COL4A4P53420 PIGN-245ENST00000640252 7924 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
COL4A4P53420 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC4.66□□□□□ -1.66
COL4A4P53420 STAG1-202ENST00000383202 6055 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
COL4A4P53420 AMMECR1LP1-201ENST00000415152 841 ntBASIC4.66□□□□□ -1.66
COL4A4P53420 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC4.66□□□□□ -1.66
COL4A4P53420 AP000477.1-202ENST00000434859 847 ntTSL 3 BASIC4.66□□□□□ -1.66
COL4A4P53420 AL357507.1-201ENST00000435946 669 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
COL4A4P53420 LINC00704-202ENST00000443994 418 ntTSL 2 BASIC4.66□□□□□ -1.66
COL4A4P53420 AC090013.1-201ENST00000485147 480 ntBASIC4.66□□□□□ -1.66
COL4A4P53420 AC113382.2-201ENST00000506911 646 ntTSL 3 BASIC4.66□□□□□ -1.66
COL4A4P53420 ZCCHC10-209ENST00000513541 794 ntAPPRIS ALT2 TSL 2 BASIC4.66□□□□□ -1.66
COL4A4P53420 RNA5SP49-201ENST00000516450 115 ntBASIC4.66□□□□□ -1.66
COL4A4P53420 AC024958.1-203ENST00000520256 577 ntTSL 2 BASIC4.66□□□□□ -1.66
COL4A4P53420 IGHV4OR15-8-201ENST00000557788 353 ntAPPRIS P1 BASIC4.66□□□□□ -1.66
COL4A4P53420 AC074237.1-201ENST00000577674 471 ntTSL 3 BASIC4.66□□□□□ -1.66
COL4A4P53420 AC091178.1-203ENST00000584586 279 ntBASIC4.66□□□□□ -1.66
COL4A4P53420 ADAD1P2-201ENST00000588476 646 ntBASIC4.66□□□□□ -1.66
COL4A4P53420 AP001269.1-201ENST00000592820 528 ntTSL 4 BASIC4.66□□□□□ -1.66
COL4A4P53420 SNORD91B-202ENST00000608459 222 ntBASIC4.66□□□□□ -1.66
COL4A4P53420 AC097505.1-201ENST00000610199 565 ntBASIC4.66□□□□□ -1.66
COL4A4P53420 AC135068.2-201ENST00000622410 353 ntAPPRIS P1 BASIC4.66□□□□□ -1.66
COL4A4P53420 TEX41-256ENST00000626411 368 ntTSL 5 BASIC4.66□□□□□ -1.66
COL4A4P53420 TMEM30CP-203ENST00000637814 1035 ntBASIC4.66□□□□□ -1.66
COL4A4P53420 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC4.66□□□□□ -1.66
COL4A4P53420 TRIP12-204ENST00000389045 5355 ntAPPRIS ALT2 TSL 1 (best) BASIC4.66□□□□□ -1.66
COL4A4P53420 ESCO1-204ENST00000622333 1850 ntTSL 2 BASIC4.65□□□□□ -1.66
COL4A4P53420 AC099654.3-201ENST00000447087 1546 ntBASIC4.65□□□□□ -1.66
COL4A4P53420 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
COL4A4P53420 GABRG1-201ENST00000295452 6785 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
COL4A4P53420 ORC4-202ENST00000392857 6530 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
COL4A4P53420 ADGRL2-209ENST00000370727 5164 ntTSL 5 BASIC4.65□□□□□ -1.66
COL4A4P53420 OR6C2-201ENST00000322678 939 ntAPPRIS P1 BASIC4.65□□□□□ -1.66
COL4A4P53420 CGA-201ENST00000369582 729 ntTSL 5 BASIC4.65□□□□□ -1.66
COL4A4P53420 LINC00626-201ENST00000420691 955 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
COL4A4P53420 AL157831.1-201ENST00000426134 473 ntBASIC4.65□□□□□ -1.66
COL4A4P53420 LINC00415-201ENST00000439079 435 ntTSL 3 BASIC4.65□□□□□ -1.66
COL4A4P53420 TAB3-AS2-201ENST00000445240 292 ntTSL 5 BASIC4.65□□□□□ -1.66
COL4A4P53420 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC4.65□□□□□ -1.66
COL4A4P53420 AC104164.2-201ENST00000496953 495 ntBASIC4.65□□□□□ -1.66
COL4A4P53420 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC4.65□□□□□ -1.66
COL4A4P53420 STPG2-AS1-201ENST00000508933 537 ntTSL 4 BASIC4.65□□□□□ -1.66
COL4A4P53420 AC090151.1-201ENST00000520784 730 ntBASIC4.65□□□□□ -1.66
COL4A4P53420 AC008415.1-201ENST00000522189 734 ntTSL 5 BASIC4.65□□□□□ -1.66
COL4A4P53420 SOX9-AS1-211ENST00000533179 460 ntTSL 3 BASIC4.65□□□□□ -1.66
COL4A4P53420 AC120057.2-201ENST00000571520 271 ntBASIC4.65□□□□□ -1.66
COL4A4P53420 AC022146.1-201ENST00000595307 847 ntBASIC4.65□□□□□ -1.66
COL4A4P53420 AL160281.1-201ENST00000605307 311 ntBASIC4.65□□□□□ -1.66
COL4A4P53420 AP001043.1-201ENST00000626259 773 ntTSL 5 BASIC4.65□□□□□ -1.66
COL4A4P53420 TEX41-300ENST00000631048 69 ntTSL 5 BASIC4.65□□□□□ -1.66
COL4A4P53420 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC4.65□□□□□ -1.66
COL4A4P53420 RBBP6-203ENST00000381039 3384 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
COL4A4P53420 LCA5L-203ENST00000380671 2080 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
COL4A4P53420 RAD17-220ENST00000616683 3057 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
COL4A4P53420 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
COL4A4P53420 DUSP19-202ENST00000354221 5176 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
COL4A4P53420 DYNC2H1-201ENST00000334267 2984 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
COL4A4P53420 HECTD4-211ENST00000550722 15450 ntAPPRIS ALT2 TSL 5 BASIC4.64□□□□□ -1.67
COL4A4P53420 DSCR8-201ENST00000357704 552 ntAPPRIS P5 TSL 2 BASIC4.64□□□□□ -1.67
COL4A4P53420 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
COL4A4P53420 SRY-201ENST00000383070 845 ntAPPRIS P1 BASIC4.64□□□□□ -1.67
COL4A4P53420 TAS2R19-201ENST00000390673 1002 ntAPPRIS P1 BASIC4.64□□□□□ -1.67
COL4A4P53420 FCF1P5-201ENST00000406490 482 ntBASIC4.64□□□□□ -1.67
COL4A4P53420 RNA5SP36-201ENST00000410197 133 ntBASIC4.64□□□□□ -1.67
COL4A4P53420 VDAC1P9-201ENST00000412766 841 ntBASIC4.64□□□□□ -1.67
COL4A4P53420 AC004448.2-201ENST00000422360 586 ntBASIC4.64□□□□□ -1.67
COL4A4P53420 AC018644.1-201ENST00000429934 551 ntBASIC4.64□□□□□ -1.67
COL4A4P53420 AL031599.1-201ENST00000432694 808 ntTSL 3 BASIC4.64□□□□□ -1.67
COL4A4P53420 EIF2S2P5-201ENST00000457635 968 ntBASIC4.64□□□□□ -1.67
COL4A4P53420 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC4.64□□□□□ -1.67
COL4A4P53420 AC022336.1-201ENST00000475510 337 ntBASIC4.64□□□□□ -1.67
COL4A4P53420 AC093331.2-201ENST00000520459 677 ntTSL 3 BASIC4.64□□□□□ -1.67
COL4A4P53420 AC027807.1-201ENST00000559921 996 ntBASIC4.64□□□□□ -1.67
COL4A4P53420 OCLM-201ENST00000574641 884 ntAPPRIS P1 BASIC4.64□□□□□ -1.67
COL4A4P53420 MIR3944-201ENST00000581277 108 ntBASIC4.64□□□□□ -1.67
COL4A4P53420 AC008752.1-201ENST00000590046 408 ntTSL 3 BASIC4.64□□□□□ -1.67
COL4A4P53420 HMGB2P1-201ENST00000591146 634 ntBASIC4.64□□□□□ -1.67
COL4A4P53420 AL121772.2-201ENST00000614331 297 ntBASIC4.64□□□□□ -1.67
COL4A4P53420 C2orf91-203ENST00000615044 393 ntAPPRIS ALT2 TSL 5 BASIC4.64□□□□□ -1.67
COL4A4P53420 AL357559.1-201ENST00000622228 274 ntBASIC4.64□□□□□ -1.67
COL4A4P53420 AC010480.1-201ENST00000624823 684 ntBASIC4.64□□□□□ -1.67
COL4A4P53420 CDH17-201ENST00000027335 3693 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
COL4A4P53420 CYLD-201ENST00000311559 5371 ntTSL 5 BASIC4.64□□□□□ -1.67
COL4A4P53420 ANK2-201ENST00000264366 11775 ntAPPRIS ALT2 TSL 5 BASIC4.64□□□□□ -1.67
COL4A4P53420 DDX4-204ENST00000505374 2884 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
COL4A4P53420 RLIMP1-201ENST00000339626 1680 ntBASIC4.64□□□□□ -1.67
COL4A4P53420 ARHGEF9-229ENST00000637040 5001 ntTSL 5 BASIC4.64□□□□□ -1.67
COL4A4P53420 ZMYND11-202ENST00000381584 2709 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
COL4A4P53420 FSBP-203ENST00000611249 2181 ntAPPRIS P1 TSL 5 BASIC4.64□□□□□ -1.67
COL4A4P53420 SLC4A7-206ENST00000428386 7385 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
COL4A4P53420 RRP15-201ENST00000366932 7771 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
COL4A4P53420 OR8H2-203ENST00000641311 3092 ntAPPRIS P2 BASIC4.64□□□□□ -1.67
COL4A4P53420 NECAB1-202ENST00000521366 2908 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
COL4A4P53420 NCK1-204ENST00000469404 2403 ntTSL 2 BASIC4.64□□□□□ -1.67
COL4A4P53420 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC4.64□□□□□ -1.67
COL4A4P53420 TANC2-202ENST00000424789 11721 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
COL4A4P53420 PPP2R2A-201ENST00000315985 1878 ntAPPRIS ALT1 TSL 2 BASIC4.64□□□□□ -1.67
COL4A4P53420 OR5K1-201ENST00000332650 1097 ntAPPRIS P1 BASIC4.64□□□□□ -1.67
COL4A4P53420 RNA5SP119-201ENST00000362715 117 ntBASIC4.64□□□□□ -1.67
COL4A4P53420 RNU1-14P-201ENST00000362759 152 ntBASIC4.64□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 78.3 ms