Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 MALAT1-210ENST00000617489 318 ntTSL 2 BASIC7.11□□□□□ -1.27
CUX1P39880 AF067845.5-201ENST00000633906 437 ntTSL 3 BASIC7.11□□□□□ -1.27
CUX1P39880 KMT2E-216ENST00000622386 1588 ntTSL 5 BASIC7.11□□□□□ -1.27
CUX1P39880 RIMS2-205ENST00000436393 4384 ntTSL 2 BASIC7.11□□□□□ -1.27
CUX1P39880 OFD1P5Y-201ENST00000447585 2590 ntBASIC7.11□□□□□ -1.27
CUX1P39880 FLRT3-202ENST00000378053 4776 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
CUX1P39880 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC7.11□□□□□ -1.27
CUX1P39880 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
CUX1P39880 GTF2H5-201ENST00000607778 7481 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
CUX1P39880 RNA5SP119-201ENST00000362715 117 ntBASIC7.11□□□□□ -1.27
CUX1P39880 TRAV36DV7-201ENST00000390463 356 ntAPPRIS P1 BASIC7.11□□□□□ -1.27
CUX1P39880 CDKN3-203ENST00000395577 637 ntTSL 5 BASIC7.11□□□□□ -1.27
CUX1P39880 USP9YP4-201ENST00000424401 1745 ntBASIC7.11□□□□□ -1.27
CUX1P39880 TCEA1P3-201ENST00000443005 880 ntBASIC7.11□□□□□ -1.27
CUX1P39880 NANOGP10-201ENST00000453325 895 ntBASIC7.11□□□□□ -1.27
CUX1P39880 AC009495.2-201ENST00000457108 506 ntTSL 2 BASIC7.11□□□□□ -1.27
CUX1P39880 RPL7P22-201ENST00000466005 733 ntBASIC7.11□□□□□ -1.27
CUX1P39880 AC098869.2-201ENST00000514187 862 ntTSL 3 BASIC7.11□□□□□ -1.27
CUX1P39880 AC026403.1-201ENST00000518938 295 ntBASIC7.11□□□□□ -1.27
CUX1P39880 AC012103.1-201ENST00000522281 780 ntTSL 3 BASIC7.11□□□□□ -1.27
CUX1P39880 AC015468.4-201ENST00000523496 568 ntTSL 4 BASIC7.11□□□□□ -1.27
CUX1P39880 AC073651.3-201ENST00000545999 417 ntTSL 3 BASIC7.11□□□□□ -1.27
CUX1P39880 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC7.11□□□□□ -1.27
CUX1P39880 AC120057.2-201ENST00000571520 271 ntBASIC7.11□□□□□ -1.27
CUX1P39880 AC107982.3-201ENST00000584957 985 ntBASIC7.11□□□□□ -1.27
CUX1P39880 BNIP3P11-201ENST00000603878 563 ntBASIC7.11□□□□□ -1.27
CUX1P39880 AC112230.1-201ENST00000604342 547 ntBASIC7.11□□□□□ -1.27
CUX1P39880 VPS29-212ENST00000621131 1124 ntTSL 3 BASIC7.11□□□□□ -1.27
CUX1P39880 SEC31A-201ENST00000264405 3447 ntTSL 2 BASIC7.11□□□□□ -1.27
CUX1P39880 ESRRG-206ENST00000366938 5274 ntAPPRIS P1 TSL 1 (best) BASIC7.11□□□□□ -1.27
CUX1P39880 AMPD1-203ENST00000520113 2375 ntAPPRIS P3 TSL 1 (best) BASIC7.11□□□□□ -1.27
CUX1P39880 HNF4G-203ENST00000396423 4209 ntAPPRIS P3 TSL 1 (best) BASIC7.1□□□□□ -1.27
CUX1P39880 PIGN-245ENST00000640252 7924 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
CUX1P39880 ZNF26-201ENST00000328654 17601 ntAPPRIS P3 TSL 1 (best) BASIC7.1□□□□□ -1.27
CUX1P39880 EIF3EP2-201ENST00000423042 1814 ntBASIC7.1□□□□□ -1.27
CUX1P39880 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC7.1□□□□□ -1.27
CUX1P39880 MYBPC1-205ENST00000536007 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC7.1□□□□□ -1.27
CUX1P39880 MYBPC1-206ENST00000541119 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC7.1□□□□□ -1.27
CUX1P39880 RDH10-AS1-201ENST00000514599 3261 ntTSL 2 BASIC7.1□□□□□ -1.27
CUX1P39880 DPRX-201ENST00000376650 648 ntAPPRIS P1 TSL 3 BASIC7.1□□□□□ -1.27
CUX1P39880 SNORA9-201ENST00000384215 133 ntBASIC7.1□□□□□ -1.27
CUX1P39880 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC7.1□□□□□ -1.27
CUX1P39880 HRH4-202ENST00000426880 909 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
CUX1P39880 YME1L1P1-201ENST00000429435 297 ntBASIC7.1□□□□□ -1.27
CUX1P39880 AL133247.1-201ENST00000435713 646 ntTSL 3 BASIC7.1□□□□□ -1.27
CUX1P39880 LINC01921-201ENST00000456163 393 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
CUX1P39880 CREM-238ENST00000488741 651 ntTSL 2 BASIC7.1□□□□□ -1.27
CUX1P39880 AC092546.1-202ENST00000505628 499 ntTSL 2 BASIC7.1□□□□□ -1.27
CUX1P39880 TPT1-AS1-216ENST00000522845 403 ntTSL 3 BASIC7.1□□□□□ -1.27
CUX1P39880 AP000889.1-201ENST00000530968 660 ntBASIC7.1□□□□□ -1.27
CUX1P39880 AL352979.3-201ENST00000553515 247 ntBASIC7.1□□□□□ -1.27
CUX1P39880 AC015726.1-202ENST00000602532 475 ntTSL 5 BASIC7.1□□□□□ -1.27
CUX1P39880 DARS-AS1-225ENST00000615163 824 ntTSL 5 BASIC7.1□□□□□ -1.27
CUX1P39880 AC245452.5-201ENST00000620649 780 ntTSL 3 BASIC7.1□□□□□ -1.27
CUX1P39880 AC007389.5-201ENST00000629214 744 ntTSL 5 BASIC7.1□□□□□ -1.27
CUX1P39880 FAM91A3P-201ENST00000456826 2544 ntBASIC7.1□□□□□ -1.27
CUX1P39880 FAT4-202ENST00000394329 16123 ntAPPRIS P1 TSL 5 BASIC7.1□□□□□ -1.27
CUX1P39880 CDH17-201ENST00000027335 3693 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
CUX1P39880 VPS13B-203ENST00000358544 14094 ntAPPRIS P4 TSL 1 (best) BASIC7.09□□□□□ -1.27
CUX1P39880 TTF2-201ENST00000369466 9462 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
CUX1P39880 LDHAL6CP-202ENST00000550738 3224 ntBASIC7.09□□□□□ -1.27
CUX1P39880 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC7.09□□□□□ -1.27
CUX1P39880 NAP1L4P1-201ENST00000319092 1157 ntBASIC7.09□□□□□ -1.27
CUX1P39880 OR51F2-201ENST00000322110 993 ntAPPRIS ALT2 BASIC7.09□□□□□ -1.27
CUX1P39880 LINC00458-202ENST00000427299 1030 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
CUX1P39880 PTMAP3-201ENST00000447474 330 ntBASIC7.09□□□□□ -1.27
CUX1P39880 AL355592.1-201ENST00000450292 386 ntTSL 2 BASIC7.09□□□□□ -1.27
CUX1P39880 AC099509.1-201ENST00000502437 652 ntTSL 2 BASIC7.09□□□□□ -1.27
CUX1P39880 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC7.09□□□□□ -1.27
CUX1P39880 AC006064.5-201ENST00000541782 248 ntBASIC7.09□□□□□ -1.27
CUX1P39880 NR1H4-204ENST00000546380 565 ntTSL 3 BASIC7.09□□□□□ -1.27
CUX1P39880 AL357172.1-201ENST00000556016 593 ntTSL 3 BASIC7.09□□□□□ -1.27
CUX1P39880 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC7.09□□□□□ -1.27
CUX1P39880 MRPS21P9-201ENST00000571150 257 ntBASIC7.09□□□□□ -1.27
CUX1P39880 AC135050.5-201ENST00000576336 543 ntTSL 4 BASIC7.09□□□□□ -1.27
CUX1P39880 FAM49B-229ENST00000615041 750 ntTSL 5 BASIC7.09□□□□□ -1.27
CUX1P39880 ADGRG2-203ENST00000356606 4630 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
CUX1P39880 C21orf91-201ENST00000284881 5433 ntAPPRIS P4 TSL 2 BASIC7.09□□□□□ -1.27
CUX1P39880 SGIP1-204ENST00000371039 4080 ntAPPRIS ALT2 TSL 1 (best) BASIC7.09□□□□□ -1.27
CUX1P39880 INPP4B-201ENST00000262992 3741 ntAPPRIS P1 TSL 5 BASIC7.09□□□□□ -1.28
CUX1P39880 OR2AG1-202ENST00000641258 6993 ntAPPRIS P1 BASIC7.09□□□□□ -1.28
CUX1P39880 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC7.08□□□□□ -1.28
CUX1P39880 CFH-201ENST00000359637 1454 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
CUX1P39880 IL15-204ENST00000477265 6026 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
CUX1P39880 ZNF33B-208ENST00000613419 5843 ntAPPRIS ALT2 TSL 5 BASIC7.08□□□□□ -1.28
CUX1P39880 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC7.08□□□□□ -1.28
CUX1P39880 ARL4AP4-201ENST00000434170 518 ntBASIC7.08□□□□□ -1.28
CUX1P39880 AC018731.1-201ENST00000447078 576 ntTSL 4 BASIC7.08□□□□□ -1.28
CUX1P39880 ATP5G1P3-201ENST00000463301 410 ntBASIC7.08□□□□□ -1.28
CUX1P39880 AC008641.1-201ENST00000523781 248 ntTSL 3 BASIC7.08□□□□□ -1.28
CUX1P39880 AC008833.1-201ENST00000611633 691 ntBASIC7.08□□□□□ -1.28
CUX1P39880 AC244100.1-202ENST00000621554 382 ntBASIC7.08□□□□□ -1.28
CUX1P39880 AC079062.1-203ENST00000581862 3610 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
CUX1P39880 IL7R-201ENST00000303115 4626 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
CUX1P39880 DTNA-231ENST00000598774 2418 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
CUX1P39880 ST7-221ENST00000465133 2155 ntTSL 5 BASIC7.08□□□□□ -1.28
CUX1P39880 EIF4EBP2-201ENST00000373218 7257 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
CUX1P39880 FCRL5-202ENST00000368189 4424 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
CUX1P39880 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
CUX1P39880 WDR5B-201ENST00000330689 3720 ntAPPRIS P1 BASIC7.07□□□□□ -1.28
Retrieved 100 of 98,524 protein–RNA pairs in 78.8 ms