Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
LMX1BO60663 CDY11P-201ENST00000447168 1651 ntBASIC4.48□□□□□ -1.69
LMX1BO60663 DPY19L2P2-203ENST00000435536 1858 ntBASIC4.47□□□□□ -1.69
LMX1BO60663 OR8H2-201ENST00000313503 3088 ntAPPRIS P2 BASIC4.47□□□□□ -1.69
LMX1BO60663 PCDH15-206ENST00000373965 9237 ntAPPRIS ALT2 TSL 5 BASIC4.47□□□□□ -1.69
LMX1BO60663 AL445623.2-201ENST00000640307 4805 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
LMX1BO60663 CD86-203ENST00000393627 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC4.47□□□□□ -1.69
LMX1BO60663 PIK3C3-217ENST00000639914 2722 ntTSL 5 BASIC4.47□□□□□ -1.69
LMX1BO60663 AC008079.2-201ENST00000623543 20396 ntBASIC4.47□□□□□ -1.69
LMX1BO60663 SLC24A2-202ENST00000341998 10749 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
LMX1BO60663 AL672167.1-204ENST00000641875 3017 ntBASIC4.47□□□□□ -1.69
LMX1BO60663 AL158066.1-201ENST00000451298 3796 ntTSL 2 BASIC4.47□□□□□ -1.69
LMX1BO60663 ABCC9-204ENST00000538350 2672 ntTSL 2 BASIC4.47□□□□□ -1.69
LMX1BO60663 ZNF568-214ENST00000616085 3542 ntTSL 5 BASIC4.47□□□□□ -1.69
LMX1BO60663 LINC02227-201ENST00000619068 3748 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
LMX1BO60663 OR1L8-201ENST00000304865 1061 ntAPPRIS P1 BASIC4.47□□□□□ -1.69
LMX1BO60663 DEFB106A-201ENST00000335186 303 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
LMX1BO60663 DEFB106B-201ENST00000335479 316 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
LMX1BO60663 NPM1-202ENST00000351986 1237 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
LMX1BO60663 RNU6-1251P-201ENST00000364502 107 ntBASIC4.47□□□□□ -1.69
LMX1BO60663 TRAV16-201ENST00000390444 329 ntAPPRIS P1 BASIC4.47□□□□□ -1.69
LMX1BO60663 Z86062.2-201ENST00000411442 380 ntTSL 5 BASIC4.47□□□□□ -1.69
LMX1BO60663 BTBD9-AS1-201ENST00000412822 560 ntTSL 2 BASIC4.47□□□□□ -1.69
LMX1BO60663 AL390774.2-201ENST00000423942 788 ntTSL 3 BASIC4.47□□□□□ -1.69
LMX1BO60663 LINC00458-202ENST00000427299 1030 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
LMX1BO60663 AC092017.2-201ENST00000427600 362 ntBASIC4.47□□□□□ -1.69
LMX1BO60663 PARGP1-202ENST00000440803 790 ntTSL 2 BASIC4.47□□□□□ -1.69
LMX1BO60663 CR769776.1-201ENST00000441254 787 ntBASIC4.47□□□□□ -1.69
LMX1BO60663 VN1R25P-201ENST00000443385 738 ntBASIC4.47□□□□□ -1.69
LMX1BO60663 GYG1P1-201ENST00000460864 698 ntBASIC4.47□□□□□ -1.69
LMX1BO60663 NAP1L1P3-201ENST00000462291 880 ntBASIC4.47□□□□□ -1.69
LMX1BO60663 AC104849.1-201ENST00000462623 405 ntBASIC4.47□□□□□ -1.69
LMX1BO60663 AC135999.1-201ENST00000478962 479 ntBASIC4.47□□□□□ -1.69
LMX1BO60663 RPL7P40-201ENST00000481703 745 ntBASIC4.47□□□□□ -1.69
LMX1BO60663 GNPDA2-202ENST00000507534 1050 ntTSL 2 BASIC4.47□□□□□ -1.69
LMX1BO60663 UBE2Q2P10-201ENST00000514854 900 ntBASIC4.47□□□□□ -1.69
LMX1BO60663 AC025437.5-201ENST00000522769 314 ntTSL 3 BASIC4.47□□□□□ -1.69
LMX1BO60663 LINC02408-202ENST00000538573 559 ntTSL 4 BASIC4.47□□□□□ -1.69
LMX1BO60663 AC127381.1-201ENST00000555979 939 ntBASIC4.47□□□□□ -1.69
LMX1BO60663 AC087477.3-201ENST00000559214 552 ntTSL 4 BASIC4.47□□□□□ -1.69
LMX1BO60663 AC027455.1-201ENST00000574104 594 ntBASIC4.47□□□□□ -1.69
LMX1BO60663 AC107926.1-201ENST00000581673 621 ntTSL 3 BASIC4.47□□□□□ -1.69
LMX1BO60663 AC015845.2-201ENST00000581805 472 ntTSL 2 BASIC4.47□□□□□ -1.69
LMX1BO60663 AL121989.1-201ENST00000585888 746 ntTSL 3 BASIC4.47□□□□□ -1.69
LMX1BO60663 LINC02112-204ENST00000606222 429 ntTSL 5 BASIC4.47□□□□□ -1.69
LMX1BO60663 C8orf89-201ENST00000613105 495 ntAPPRIS ALT2 TSL 1 (best) BASIC4.47□□□□□ -1.69
LMX1BO60663 RMST_5.1-201ENST00000618704 126 ntBASIC4.47□□□□□ -1.69
LMX1BO60663 AL161616.2-201ENST00000622001 565 ntTSL 4 BASIC4.47□□□□□ -1.69
LMX1BO60663 AC010435.1-201ENST00000623353 1177 ntBASIC4.47□□□□□ -1.69
LMX1BO60663 AC244517.5-203ENST00000624778 517 ntTSL 2 BASIC4.47□□□□□ -1.69
LMX1BO60663 PCBP1-AS1-278ENST00000625518 864 ntTSL 5 BASIC4.47□□□□□ -1.69
LMX1BO60663 DUXB-201ENST00000633875 1079 ntAPPRIS P1 TSL 3 BASIC4.47□□□□□ -1.69
LMX1BO60663 SPTY2D1-AS1-204ENST00000634992 373 ntAPPRIS P5 TSL 5 BASIC4.47□□□□□ -1.69
LMX1BO60663 AC073869.7-201ENST00000640874 297 ntBASIC4.47□□□□□ -1.69
LMX1BO60663 ASAH2-204ENST00000447815 2311 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
LMX1BO60663 ZNF83-204ENST00000545872 2633 ntAPPRIS P1 TSL 2 BASIC4.47□□□□□ -1.69
LMX1BO60663 OR9G1-202ENST00000642097 3611 ntAPPRIS P1 BASIC4.47□□□□□ -1.69
LMX1BO60663 PPEF1-201ENST00000349874 2687 ntTSL 5 BASIC4.47□□□□□ -1.69
LMX1BO60663 USP8-204ENST00000425032 3559 ntTSL 2 BASIC4.47□□□□□ -1.69
LMX1BO60663 RGS1-201ENST00000367459 1405 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.69
LMX1BO60663 ARHGAP18-201ENST00000368149 4462 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.69
LMX1BO60663 XIRP2-203ENST00000409195 12675 ntTSL 5 BASIC4.46□□□□□ -1.69
LMX1BO60663 PSG1-204ENST00000436291 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC4.46□□□□□ -1.69
LMX1BO60663 NRG1-220ENST00000539990 2401 ntTSL 2 BASIC4.46□□□□□ -1.69
LMX1BO60663 AC007382.1-201ENST00000624376 2618 ntBASIC4.46□□□□□ -1.69
LMX1BO60663 ECT2L-201ENST00000367682 4343 ntAPPRIS P1 TSL 5 BASIC4.46□□□□□ -1.69
LMX1BO60663 MYO9A-203ENST00000444904 7749 ntAPPRIS P2 TSL 5 BASIC4.46□□□□□ -1.69
LMX1BO60663 CTAGE5-210ENST00000553728 4392 ntAPPRIS ALT2 TSL 5 BASIC4.46□□□□□ -1.7
LMX1BO60663 FAP-203ENST00000443424 2598 ntTSL 2 BASIC4.46□□□□□ -1.7
LMX1BO60663 OR8A1-203ENST00000641670 5709 ntAPPRIS P1 BASIC4.46□□□□□ -1.7
LMX1BO60663 IRAK4-203ENST00000448290 1381 ntTSL 5 BASIC4.46□□□□□ -1.7
LMX1BO60663 AC004852.2-204ENST00000614137 1370 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
LMX1BO60663 RAD1P1-201ENST00000231383 813 ntBASIC4.46□□□□□ -1.7
LMX1BO60663 U3.3-201ENST00000362986 216 ntBASIC4.46□□□□□ -1.7
LMX1BO60663 PRKACB-203ENST00000370684 869 ntTSL 5 BASIC4.46□□□□□ -1.7
LMX1BO60663 IGLV7-43-201ENST00000390298 385 ntAPPRIS P1 BASIC4.46□□□□□ -1.7
LMX1BO60663 OR8V1P-201ENST00000395193 873 ntBASIC4.46□□□□□ -1.7
LMX1BO60663 RNF212B-201ENST00000399905 1071 ntTSL 5 BASIC4.46□□□□□ -1.7
LMX1BO60663 AL049545.1-201ENST00000401856 572 ntBASIC4.46□□□□□ -1.7
LMX1BO60663 RN7SKP126-201ENST00000411143 300 ntBASIC4.46□□□□□ -1.7
LMX1BO60663 CTSL3P-202ENST00000412179 788 ntBASIC4.46□□□□□ -1.7
LMX1BO60663 LINC00342-201ENST00000412393 654 ntTSL 3 BASIC4.46□□□□□ -1.7
LMX1BO60663 AL390036.1-201ENST00000419428 734 ntTSL 5 BASIC4.46□□□□□ -1.7
LMX1BO60663 LANCL1-AS1-202ENST00000420418 476 ntTSL 3 BASIC4.46□□□□□ -1.7
LMX1BO60663 OR2X1P-201ENST00000421144 687 ntBASIC4.46□□□□□ -1.7
LMX1BO60663 AL391832.1-201ENST00000423963 423 ntTSL 5 BASIC4.46□□□□□ -1.7
LMX1BO60663 AC090505.2-201ENST00000427064 464 ntTSL 3 BASIC4.46□□□□□ -1.7
LMX1BO60663 LINC01731-201ENST00000428035 420 ntTSL 3 BASIC4.46□□□□□ -1.7
LMX1BO60663 VN1R108P-201ENST00000431580 830 ntBASIC4.46□□□□□ -1.7
LMX1BO60663 AL049745.1-201ENST00000433953 286 ntBASIC4.46□□□□□ -1.7
LMX1BO60663 USP9YP24-201ENST00000434374 697 ntBASIC4.46□□□□□ -1.7
LMX1BO60663 TMEM244-202ENST00000438392 565 ntAPPRIS P1 TSL 5 BASIC4.46□□□□□ -1.7
LMX1BO60663 AC006333.1-202ENST00000440504 555 ntTSL 4 BASIC4.46□□□□□ -1.7
LMX1BO60663 USP9YP17-201ENST00000444617 696 ntBASIC4.46□□□□□ -1.7
LMX1BO60663 CYCSP24-201ENST00000445119 316 ntBASIC4.46□□□□□ -1.7
LMX1BO60663 AL592431.1-201ENST00000451090 317 ntTSL 3 BASIC4.46□□□□□ -1.7
LMX1BO60663 AC006463.2-201ENST00000473326 348 ntBASIC4.46□□□□□ -1.7
LMX1BO60663 CEACAMP10-202ENST00000495431 496 ntBASIC4.46□□□□□ -1.7
LMX1BO60663 LINC02325-201ENST00000499910 1115 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
LMX1BO60663 AC093292.1-201ENST00000505050 449 ntTSL 3 BASIC4.46□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 127.4 ms