Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 ZEB2-241ENST00000637304 9158 ntTSL 5 BASIC6.76□□□□□ -1.33
CCDC39Q9UFE4 KSR2-202ENST00000425217 17008 ntTSL 5 BASIC6.76□□□□□ -1.33
CCDC39Q9UFE4 GHR-207ENST00000537449 4419 ntAPPRIS P1 TSL 5 BASIC6.76□□□□□ -1.33
CCDC39Q9UFE4 LINC00320-204ENST00000437238 2004 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
CCDC39Q9UFE4 AASDH-201ENST00000205214 3590 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
CCDC39Q9UFE4 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC6.76□□□□□ -1.33
CCDC39Q9UFE4 RN7SKP145-201ENST00000363291 303 ntBASIC6.76□□□□□ -1.33
CCDC39Q9UFE4 RNU6-1005P-201ENST00000384519 107 ntBASIC6.76□□□□□ -1.33
CCDC39Q9UFE4 FGF7P8-201ENST00000402994 292 ntBASIC6.76□□□□□ -1.33
CCDC39Q9UFE4 RPA3-204ENST00000406109 434 ntTSL 3 BASIC6.76□□□□□ -1.33
CCDC39Q9UFE4 AL590002.1-201ENST00000406554 418 ntBASIC6.76□□□□□ -1.33
CCDC39Q9UFE4 RN7SKP86-201ENST00000410454 332 ntBASIC6.76□□□□□ -1.33
CCDC39Q9UFE4 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC6.76□□□□□ -1.33
CCDC39Q9UFE4 AF228730.4-201ENST00000421457 183 ntBASIC6.76□□□□□ -1.33
CCDC39Q9UFE4 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC6.76□□□□□ -1.33
CCDC39Q9UFE4 AL590302.1-201ENST00000431017 359 ntTSL 2 BASIC6.76□□□□□ -1.33
CCDC39Q9UFE4 AC002378.1-201ENST00000432360 298 ntTSL 3 BASIC6.76□□□□□ -1.33
CCDC39Q9UFE4 USP9YP8-201ENST00000441913 500 ntBASIC6.76□□□□□ -1.33
CCDC39Q9UFE4 RPL6P30-201ENST00000443382 862 ntBASIC6.76□□□□□ -1.33
CCDC39Q9UFE4 RPL5P7-201ENST00000444235 813 ntBASIC6.76□□□□□ -1.33
CCDC39Q9UFE4 SDC4P-201ENST00000453285 601 ntBASIC6.76□□□□□ -1.33
CCDC39Q9UFE4 KATNBL1P6-201ENST00000453433 915 ntBASIC6.76□□□□□ -1.33
CCDC39Q9UFE4 RPL12P39-201ENST00000455456 496 ntBASIC6.76□□□□□ -1.33
CCDC39Q9UFE4 RPL7P1-201ENST00000468161 747 ntBASIC6.76□□□□□ -1.33
CCDC39Q9UFE4 RPL7P9-201ENST00000468715 747 ntBASIC6.76□□□□□ -1.33
CCDC39Q9UFE4 TSACC-207ENST00000470342 601 ntTSL 2 BASIC6.76□□□□□ -1.33
CCDC39Q9UFE4 AC079080.1-201ENST00000479841 822 ntBASIC6.76□□□□□ -1.33
CCDC39Q9UFE4 LINC02360-201ENST00000506195 657 ntTSL 3 BASIC6.76□□□□□ -1.33
CCDC39Q9UFE4 SCOC-206ENST00000506322 687 ntAPPRIS ALT1 TSL 5 BASIC6.76□□□□□ -1.33
CCDC39Q9UFE4 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
CCDC39Q9UFE4 RNA5SP303-201ENST00000516192 130 ntBASIC6.76□□□□□ -1.33
CCDC39Q9UFE4 RN7SKP288-201ENST00000516227 268 ntBASIC6.76□□□□□ -1.33
CCDC39Q9UFE4 RNU6-875P-201ENST00000516488 106 ntBASIC6.76□□□□□ -1.33
CCDC39Q9UFE4 AC087664.1-201ENST00000521456 358 ntTSL 3 BASIC6.76□□□□□ -1.33
CCDC39Q9UFE4 AC138832.1-201ENST00000522871 556 ntBASIC6.76□□□□□ -1.33
CCDC39Q9UFE4 LINC02441-201ENST00000543651 552 ntTSL 4 BASIC6.76□□□□□ -1.33
CCDC39Q9UFE4 UBE2NP1-201ENST00000545592 458 ntBASIC6.76□□□□□ -1.33
CCDC39Q9UFE4 AC012435.1-202ENST00000568772 240 ntBASIC6.76□□□□□ -1.33
CCDC39Q9UFE4 AC103810.2-203ENST00000584959 631 ntTSL 5 BASIC6.76□□□□□ -1.33
CCDC39Q9UFE4 AC091132.5-204ENST00000586348 630 ntTSL 3 BASIC6.76□□□□□ -1.33
CCDC39Q9UFE4 uc_338.26-201ENST00000612659 160 ntBASIC6.76□□□□□ -1.33
CCDC39Q9UFE4 AL589745.2-201ENST00000616366 555 ntTSL 4 BASIC6.76□□□□□ -1.33
CCDC39Q9UFE4 OR2AK2-202ENST00000641852 1008 ntAPPRIS P2 BASIC6.76□□□□□ -1.33
CCDC39Q9UFE4 Z83820.1-201ENST00000456978 1499 ntBASIC6.76□□□□□ -1.33
CCDC39Q9UFE4 PAK3-205ENST00000417227 2196 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
CCDC39Q9UFE4 SLC26A3-201ENST00000340010 2863 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
CCDC39Q9UFE4 GPATCH11-201ENST00000281932 3570 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
CCDC39Q9UFE4 DOPEY1-201ENST00000237163 7995 ntAPPRIS ALT1 TSL 5 BASIC6.76□□□□□ -1.33
CCDC39Q9UFE4 MAPK10-328ENST00000641553 4009 ntBASIC6.76□□□□□ -1.33
CCDC39Q9UFE4 C3orf67-209ENST00000482387 2617 ntTSL 5 BASIC6.76□□□□□ -1.33
CCDC39Q9UFE4 MTRNR2L6-201ENST00000604952 1447 ntAPPRIS P1 BASIC6.76□□□□□ -1.33
CCDC39Q9UFE4 MAPK10-338ENST00000641647 3362 ntBASIC6.75□□□□□ -1.33
CCDC39Q9UFE4 GRIA4-204ENST00000428631 2778 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
CCDC39Q9UFE4 PPARGC1A-201ENST00000264867 6318 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
CCDC39Q9UFE4 TTBK2-201ENST00000267890 10905 ntAPPRIS P2 TSL 5 BASIC6.75□□□□□ -1.33
CCDC39Q9UFE4 SEPT7-203ENST00000399035 4066 ntAPPRIS ALT1 TSL 5 BASIC6.75□□□□□ -1.33
CCDC39Q9UFE4 FNIP1-201ENST00000307954 6366 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
CCDC39Q9UFE4 LINC02510-201ENST00000509798 1576 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
CCDC39Q9UFE4 NAMPTP1-201ENST00000440465 2514 ntBASIC6.75□□□□□ -1.33
CCDC39Q9UFE4 SERPINA9-204ENST00000424550 1462 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
CCDC39Q9UFE4 GABRG1-201ENST00000295452 6785 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
CCDC39Q9UFE4 DGKB-201ENST00000399322 6684 ntAPPRIS P2 TSL 5 BASIC6.75□□□□□ -1.33
CCDC39Q9UFE4 PLCXD3-201ENST00000328457 7538 ntAPPRIS P1 TSL 5 BASIC6.75□□□□□ -1.33
CCDC39Q9UFE4 CXCL10-201ENST00000306602 1176 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
CCDC39Q9UFE4 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC6.75□□□□□ -1.33
CCDC39Q9UFE4 RNU6-697P-201ENST00000363348 107 ntBASIC6.75□□□□□ -1.33
CCDC39Q9UFE4 RNA5SP279-201ENST00000365513 117 ntBASIC6.75□□□□□ -1.33
CCDC39Q9UFE4 RPL7P8-201ENST00000411964 730 ntBASIC6.75□□□□□ -1.33
CCDC39Q9UFE4 AC002511.2-201ENST00000413796 450 ntTSL 2 BASIC6.75□□□□□ -1.33
CCDC39Q9UFE4 AL590999.1-205ENST00000420293 440 ntTSL 3 BASIC6.75□□□□□ -1.33
CCDC39Q9UFE4 SETP9-201ENST00000423837 832 ntBASIC6.75□□□□□ -1.33
CCDC39Q9UFE4 HMGN2P27-201ENST00000427352 270 ntBASIC6.75□□□□□ -1.33
CCDC39Q9UFE4 LINC01501-201ENST00000427523 409 ntTSL 3 BASIC6.75□□□□□ -1.33
CCDC39Q9UFE4 TSSK4-203ENST00000428351 576 ntTSL 2 BASIC6.75□□□□□ -1.33
CCDC39Q9UFE4 MTCO1P45-201ENST00000431457 267 ntBASIC6.75□□□□□ -1.33
CCDC39Q9UFE4 AC000111.3-201ENST00000433478 193 ntBASIC6.75□□□□□ -1.33
CCDC39Q9UFE4 DIAPH2-AS1-201ENST00000439759 971 ntTSL 3 BASIC6.75□□□□□ -1.33
CCDC39Q9UFE4 AL360089.1-201ENST00000442260 436 ntTSL 5 BASIC6.75□□□□□ -1.33
CCDC39Q9UFE4 FRG2FP-204ENST00000453982 852 ntBASIC6.75□□□□□ -1.33
CCDC39Q9UFE4 OR2AF1P-201ENST00000454899 889 ntBASIC6.75□□□□□ -1.33
CCDC39Q9UFE4 AC104164.1-201ENST00000460282 590 ntBASIC6.75□□□□□ -1.33
CCDC39Q9UFE4 AP000852.1-201ENST00000472460 573 ntBASIC6.75□□□□□ -1.33
CCDC39Q9UFE4 HMGB1P3-201ENST00000502802 616 ntBASIC6.75□□□□□ -1.33
CCDC39Q9UFE4 AC004069.1-201ENST00000504082 549 ntTSL 4 BASIC6.75□□□□□ -1.33
CCDC39Q9UFE4 OR7E99P-201ENST00000505750 922 ntBASIC6.75□□□□□ -1.33
CCDC39Q9UFE4 AC027627.1-201ENST00000506895 753 ntTSL 3 BASIC6.75□□□□□ -1.33
CCDC39Q9UFE4 ZFPM2-AS1-201ENST00000509144 542 ntTSL 3 BASIC6.75□□□□□ -1.33
CCDC39Q9UFE4 AC106872.4-201ENST00000510050 523 ntBASIC6.75□□□□□ -1.33
CCDC39Q9UFE4 AC008957.1-202ENST00000512329 681 ntTSL 3 BASIC6.75□□□□□ -1.33
CCDC39Q9UFE4 MIR100HG-221ENST00000534297 572 ntTSL 4 BASIC6.75□□□□□ -1.33
CCDC39Q9UFE4 AAGAB-203ENST00000542650 1015 ntTSL 2 BASIC6.75□□□□□ -1.33
CCDC39Q9UFE4 AC091814.1-201ENST00000545258 719 ntTSL 3 BASIC6.75□□□□□ -1.33
CCDC39Q9UFE4 NELL2-211ENST00000548826 559 ntTSL 2 BASIC6.75□□□□□ -1.33
CCDC39Q9UFE4 MYL6-213ENST00000549017 502 ntTSL 3 BASIC6.75□□□□□ -1.33
CCDC39Q9UFE4 AC025682.1-201ENST00000582389 437 ntTSL 5 BASIC6.75□□□□□ -1.33
CCDC39Q9UFE4 RN7SL622P-201ENST00000585292 275 ntBASIC6.75□□□□□ -1.33
CCDC39Q9UFE4 APOC2-205ENST00000592257 444 ntTSL 3 BASIC6.75□□□□□ -1.33
CCDC39Q9UFE4 AC004862.1-203ENST00000598433 1020 ntTSL 5 BASIC6.75□□□□□ -1.33
CCDC39Q9UFE4 AL133481.2-203ENST00000607558 139 ntBASIC6.75□□□□□ -1.33
CCDC39Q9UFE4 AC110609.1-201ENST00000608228 303 ntTSL 3 BASIC6.75□□□□□ -1.33
Retrieved 100 of 98,524 protein–RNA pairs in 79.5 ms