Protein–RNA interactions for Protein: Q12946

FOXF1, Forkhead box protein F1, humanhuman

Predictions only

Length 379 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXF1Q12946 NIP7P2-201ENST00000485801 544 ntBASIC3.98□□□□□ -1.77
FOXF1Q12946 MGST2-204ENST00000506797 634 ntTSL 2 BASIC3.98□□□□□ -1.77
FOXF1Q12946 AC079921.1-201ENST00000509449 946 ntTSL 3 BASIC3.98□□□□□ -1.77
FOXF1Q12946 IGLVVI-25-1-201ENST00000521893 249 ntBASIC3.98□□□□□ -1.77
FOXF1Q12946 AC068831.4-201ENST00000556118 109 ntBASIC3.98□□□□□ -1.77
FOXF1Q12946 LINC02157-201ENST00000558885 447 ntTSL 5 BASIC3.98□□□□□ -1.77
FOXF1Q12946 AC007066.2-202ENST00000566531 914 ntBASIC3.98□□□□□ -1.77
FOXF1Q12946 AP005121.1-201ENST00000578243 469 ntTSL 3 BASIC3.98□□□□□ -1.77
FOXF1Q12946 ZNF230-204ENST00000585632 579 ntTSL 2 BASIC3.98□□□□□ -1.77
FOXF1Q12946 AC079587.1-201ENST00000603846 277 ntBASIC3.98□□□□□ -1.77
FOXF1Q12946 C2orf91-203ENST00000615044 393 ntAPPRIS ALT2 TSL 5 BASIC3.98□□□□□ -1.77
FOXF1Q12946 AL121873.1-201ENST00000616013 524 ntBASIC3.98□□□□□ -1.77
FOXF1Q12946 SNX18P1Y-201ENST00000616231 511 ntBASIC3.98□□□□□ -1.77
FOXF1Q12946 MIR548A1HG-201ENST00000636739 558 ntTSL 4 BASIC3.98□□□□□ -1.77
FOXF1Q12946 AC138627.1-204ENST00000641894 765 ntBASIC3.98□□□□□ -1.77
FOXF1Q12946 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC3.98□□□□□ -1.77
FOXF1Q12946 OR5AQ1P-202ENST00000641257 1534 ntBASIC3.98□□□□□ -1.77
FOXF1Q12946 AC090017.1-201ENST00000548612 1779 ntBASIC3.98□□□□□ -1.77
FOXF1Q12946 CFAP70-203ENST00000355577 3691 ntTSL 5 BASIC3.98□□□□□ -1.77
FOXF1Q12946 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
FOXF1Q12946 OBSCN-204ENST00000366707 26772 ntAPPRIS P1 TSL 5 BASIC3.98□□□□□ -1.77
FOXF1Q12946 SLC26A3-201ENST00000340010 2863 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
FOXF1Q12946 SNCA-AS1-201ENST00000501215 2646 ntTSL 2 BASIC3.98□□□□□ -1.77
FOXF1Q12946 LINC01102-204ENST00000451400 3778 ntTSL 2 BASIC3.98□□□□□ -1.77
FOXF1Q12946 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC3.98□□□□□ -1.77
FOXF1Q12946 AGTR1-202ENST00000402260 2172 ntTSL 5 BASIC3.97□□□□□ -1.77
FOXF1Q12946 TMEM255A-202ENST00000371352 2879 ntTSL 2 BASIC3.97□□□□□ -1.77
FOXF1Q12946 KCNJ1-202ENST00000324036 2614 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
FOXF1Q12946 ALS2CR12-203ENST00000405148 2013 ntAPPRIS P3 TSL 5 BASIC3.97□□□□□ -1.77
FOXF1Q12946 AP1G1-207ENST00000564155 2723 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
FOXF1Q12946 AP5M1-201ENST00000261558 11737 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
FOXF1Q12946 UBE2W-207ENST00000602593 2201 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
FOXF1Q12946 HYKK-206ENST00000569878 4097 ntAPPRIS P1 TSL 5 BASIC3.97□□□□□ -1.77
FOXF1Q12946 AC010132.2-201ENST00000295493 1043 ntBASIC3.97□□□□□ -1.77
FOXF1Q12946 PSG11-201ENST00000306322 990 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
FOXF1Q12946 SNORA56-201ENST00000383966 129 ntBASIC3.97□□□□□ -1.77
FOXF1Q12946 MIR3065-201ENST00000390137 79 ntBASIC3.97□□□□□ -1.77
FOXF1Q12946 AC097374.1-203ENST00000400783 485 ntBASIC3.97□□□□□ -1.77
FOXF1Q12946 AL121834.1-202ENST00000404494 277 ntBASIC3.97□□□□□ -1.77
FOXF1Q12946 AC004448.2-201ENST00000422360 586 ntBASIC3.97□□□□□ -1.77
FOXF1Q12946 AF230666.1-201ENST00000429151 786 ntTSL 2 BASIC3.97□□□□□ -1.77
FOXF1Q12946 AP000943.1-201ENST00000438416 712 ntTSL 3 BASIC3.97□□□□□ -1.77
FOXF1Q12946 AL161618.1-201ENST00000438738 761 ntTSL 5 BASIC3.97□□□□□ -1.77
FOXF1Q12946 Z99127.1-202ENST00000448686 526 ntTSL 2 BASIC3.97□□□□□ -1.77
FOXF1Q12946 RPL7P32-201ENST00000457119 744 ntBASIC3.97□□□□□ -1.77
FOXF1Q12946 RPL23AP24-201ENST00000458203 385 ntBASIC3.97□□□□□ -1.77
FOXF1Q12946 AC012158.1-204ENST00000483430 465 ntBASIC3.97□□□□□ -1.77
FOXF1Q12946 C1orf143-202ENST00000491260 813 ntTSL 3 BASIC3.97□□□□□ -1.77
FOXF1Q12946 RPS27AP16-201ENST00000492222 470 ntBASIC3.97□□□□□ -1.77
FOXF1Q12946 RN7SL812P-201ENST00000493791 279 ntBASIC3.97□□□□□ -1.77
FOXF1Q12946 ATP1B1P1-201ENST00000509767 915 ntBASIC3.97□□□□□ -1.77
FOXF1Q12946 IGKV1OR2-1-201ENST00000514060 354 ntBASIC3.97□□□□□ -1.77
FOXF1Q12946 RNU6-1334P-201ENST00000516032 105 ntBASIC3.97□□□□□ -1.77
FOXF1Q12946 RNU6-964P-201ENST00000516524 69 ntBASIC3.97□□□□□ -1.77
FOXF1Q12946 OR5BC1P-201ENST00000529327 739 ntBASIC3.97□□□□□ -1.77
FOXF1Q12946 PCLAF-203ENST00000558008 766 ntTSL 3 BASIC3.97□□□□□ -1.77
FOXF1Q12946 AC023034.1-201ENST00000558141 518 ntTSL 3 BASIC3.97□□□□□ -1.77
FOXF1Q12946 AC009039.1-201ENST00000568711 471 ntTSL 4 BASIC3.97□□□□□ -1.77
FOXF1Q12946 RPL23AP97-201ENST00000568955 471 ntBASIC3.97□□□□□ -1.77
FOXF1Q12946 AL136295.6-201ENST00000610486 658 ntBASIC3.97□□□□□ -1.77
FOXF1Q12946 LCA5L-203ENST00000380671 2080 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
FOXF1Q12946 TAX1BP1-202ENST00000396319 2892 ntAPPRIS P3 TSL 1 (best) BASIC3.97□□□□□ -1.77
FOXF1Q12946 UGT2A3-201ENST00000251566 2965 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
FOXF1Q12946 RBMS1-202ENST00000392753 3781 ntTSL 5 BASIC3.97□□□□□ -1.77
FOXF1Q12946 RASGRP1-209ENST00000559830 1910 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
FOXF1Q12946 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
FOXF1Q12946 OR2AT4-203ENST00000641541 8795 ntAPPRIS P1 BASIC3.97□□□□□ -1.77
FOXF1Q12946 SNCA-213ENST00000618500 3022 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
FOXF1Q12946 AC016687.3-202ENST00000505018 2404 ntTSL 1 (best) BASIC3.96□□□□□ -1.77
FOXF1Q12946 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC3.96□□□□□ -1.77
FOXF1Q12946 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC3.96□□□□□ -1.77
FOXF1Q12946 LINC01355-201ENST00000566551 5444 ntBASIC3.96□□□□□ -1.78
FOXF1Q12946 C5orf63-205ENST00000535381 5680 ntTSL 3 BASIC3.96□□□□□ -1.78
FOXF1Q12946 VIRMA-201ENST00000297591 6528 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
FOXF1Q12946 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC3.96□□□□□ -1.78
FOXF1Q12946 MIR331-201ENST00000362302 94 ntBASIC3.96□□□□□ -1.78
FOXF1Q12946 RNA5SP22-201ENST00000365393 109 ntBASIC3.96□□□□□ -1.78
FOXF1Q12946 TRAV35-201ENST00000390462 330 ntBASIC3.96□□□□□ -1.78
FOXF1Q12946 MIR1911-201ENST00000410783 80 ntBASIC3.96□□□□□ -1.78
FOXF1Q12946 AC087380.1-202ENST00000415970 1163 ntTSL 2 BASIC3.96□□□□□ -1.78
FOXF1Q12946 RPL12P34-201ENST00000424532 479 ntBASIC3.96□□□□□ -1.78
FOXF1Q12946 AL732292.1-201ENST00000426692 226 ntBASIC3.96□□□□□ -1.78
FOXF1Q12946 NFYAP1-201ENST00000431953 972 ntBASIC3.96□□□□□ -1.78
FOXF1Q12946 FHP1-201ENST00000442741 703 ntBASIC3.96□□□□□ -1.78
FOXF1Q12946 AL033380.1-201ENST00000442781 421 ntTSL 2 BASIC3.96□□□□□ -1.78
FOXF1Q12946 TPT1P13-201ENST00000449760 499 ntBASIC3.96□□□□□ -1.78
FOXF1Q12946 RN7SL98P-201ENST00000462271 300 ntBASIC3.96□□□□□ -1.78
FOXF1Q12946 RPL35AP15-201ENST00000468042 339 ntBASIC3.96□□□□□ -1.78
FOXF1Q12946 AC090589.1-201ENST00000473109 362 ntBASIC3.96□□□□□ -1.78
FOXF1Q12946 RN7SL41P-201ENST00000476144 297 ntBASIC3.96□□□□□ -1.78
FOXF1Q12946 LINC02374-201ENST00000503637 743 ntTSL 3 BASIC3.96□□□□□ -1.78
FOXF1Q12946 AC106864.2-201ENST00000505632 740 ntTSL 2 BASIC3.96□□□□□ -1.78
FOXF1Q12946 STMN1P2-201ENST00000508435 439 ntBASIC3.96□□□□□ -1.78
FOXF1Q12946 AC093297.2-204ENST00000508945 295 ntTSL 3 BASIC3.96□□□□□ -1.78
FOXF1Q12946 LDHBP3-201ENST00000514909 822 ntBASIC3.96□□□□□ -1.78
FOXF1Q12946 AP002981.1-201ENST00000517692 975 ntBASIC3.96□□□□□ -1.78
FOXF1Q12946 AC133634.1-201ENST00000517695 566 ntTSL 3 BASIC3.96□□□□□ -1.78
FOXF1Q12946 OSBPL9P2-201ENST00000526582 1228 ntBASIC3.96□□□□□ -1.78
FOXF1Q12946 AL352979.3-201ENST00000553515 247 ntBASIC3.96□□□□□ -1.78
FOXF1Q12946 AL163932.1-201ENST00000555776 542 ntTSL 4 BASIC3.96□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 78.7 ms