Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 AC006210.2-201ENST00000367074 1545 ntBASIC6.52□□□□□ -1.37
SOX4Q06945 MAPRE2-211ENST00000589699 4080 ntAPPRIS ALT1 TSL 2 BASIC6.52□□□□□ -1.37
SOX4Q06945 TAF7L-203ENST00000372907 2341 ntAPPRIS P3 TSL 1 (best) BASIC6.52□□□□□ -1.37
SOX4Q06945 AC008040.1-202ENST00000483289 6251 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
SOX4Q06945 AC113146.2-201ENST00000560743 1961 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
SOX4Q06945 CREM-203ENST00000344351 1625 ntTSL 2 BASIC6.52□□□□□ -1.37
SOX4Q06945 HMGB1P5-201ENST00000255320 642 ntBASIC6.52□□□□□ -1.37
SOX4Q06945 CLEC2D-201ENST00000261339 465 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
SOX4Q06945 ZNF28-201ENST00000339844 650 ntTSL 4 BASIC6.52□□□□□ -1.37
SOX4Q06945 RNU1-150P-201ENST00000362491 162 ntBASIC6.52□□□□□ -1.37
SOX4Q06945 RNA5SP88-201ENST00000365560 109 ntBASIC6.52□□□□□ -1.37
SOX4Q06945 SNORA40.3-201ENST00000390964 122 ntBASIC6.52□□□□□ -1.37
SOX4Q06945 RN7SKP59-201ENST00000410520 314 ntBASIC6.52□□□□□ -1.37
SOX4Q06945 RPL21P111-201ENST00000418453 477 ntBASIC6.52□□□□□ -1.37
SOX4Q06945 AC092484.1-201ENST00000420548 833 ntTSL 5 BASIC6.52□□□□□ -1.37
SOX4Q06945 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC6.52□□□□□ -1.37
SOX4Q06945 AF228730.4-201ENST00000421457 183 ntBASIC6.52□□□□□ -1.37
SOX4Q06945 AL513174.1-201ENST00000423182 629 ntBASIC6.52□□□□□ -1.37
SOX4Q06945 FABP7P1-201ENST00000424004 391 ntBASIC6.52□□□□□ -1.37
SOX4Q06945 LINC01799-202ENST00000426260 625 ntTSL 3 BASIC6.52□□□□□ -1.37
SOX4Q06945 ELOCP14-201ENST00000428070 331 ntBASIC6.52□□□□□ -1.37
SOX4Q06945 BX323845.3-201ENST00000428215 527 ntBASIC6.52□□□□□ -1.37
SOX4Q06945 AC068631.1-204ENST00000428501 534 ntTSL 3 BASIC6.52□□□□□ -1.37
SOX4Q06945 AL358972.1-201ENST00000434356 466 ntTSL 2 BASIC6.52□□□□□ -1.37
SOX4Q06945 KCTD9P3-201ENST00000434597 1169 ntBASIC6.52□□□□□ -1.37
SOX4Q06945 PCBP2P1-201ENST00000437262 977 ntBASIC6.52□□□□□ -1.37
SOX4Q06945 ELOCP7-201ENST00000439968 331 ntBASIC6.52□□□□□ -1.37
SOX4Q06945 OR13K1P-201ENST00000444577 975 ntBASIC6.52□□□□□ -1.37
SOX4Q06945 AC007677.1-201ENST00000445757 515 ntBASIC6.52□□□□□ -1.37
SOX4Q06945 MTND4P19-201ENST00000446659 478 ntBASIC6.52□□□□□ -1.37
SOX4Q06945 AC112187.1-201ENST00000455837 479 ntBASIC6.52□□□□□ -1.37
SOX4Q06945 AC090013.1-201ENST00000485147 480 ntBASIC6.52□□□□□ -1.37
SOX4Q06945 Metazoa_SRP.158-201ENST00000487171 294 ntBASIC6.52□□□□□ -1.37
SOX4Q06945 GYPA-203ENST00000503627 318 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
SOX4Q06945 AC097521.1-201ENST00000505488 567 ntTSL 3 BASIC6.52□□□□□ -1.37
SOX4Q06945 HAND2-AS1-235ENST00000515376 951 ntTSL 3 BASIC6.52□□□□□ -1.37
SOX4Q06945 COMMD10-206ENST00000515539 869 ntTSL 3 BASIC6.52□□□□□ -1.37
SOX4Q06945 RN7SKP31-201ENST00000516354 278 ntBASIC6.52□□□□□ -1.37
SOX4Q06945 UQCRB-204ENST00000518406 595 ntTSL 5 BASIC6.52□□□□□ -1.37
SOX4Q06945 NRG1-IT1-202ENST00000521463 742 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
SOX4Q06945 CASC21-201ENST00000521586 290 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
SOX4Q06945 MINCR-206ENST00000524335 499 ntTSL 2 BASIC6.52□□□□□ -1.37
SOX4Q06945 AP003059.1-201ENST00000526206 432 ntTSL 5 BASIC6.52□□□□□ -1.37
SOX4Q06945 AC022075.3-201ENST00000539009 649 ntTSL 3 BASIC6.52□□□□□ -1.37
SOX4Q06945 AL442663.2-201ENST00000554385 511 ntBASIC6.52□□□□□ -1.37
SOX4Q06945 AL157955.1-201ENST00000554433 331 ntTSL 3 BASIC6.52□□□□□ -1.37
SOX4Q06945 OR4H6P-201ENST00000563771 921 ntBASIC6.52□□□□□ -1.37
SOX4Q06945 AL391840.1-201ENST00000571144 367 ntBASIC6.52□□□□□ -1.37
SOX4Q06945 AC087501.3-201ENST00000576477 513 ntTSL 5 BASIC6.52□□□□□ -1.37
SOX4Q06945 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC6.52□□□□□ -1.37
SOX4Q06945 AL157938.2-201ENST00000587264 894 ntTSL 5 BASIC6.52□□□□□ -1.37
SOX4Q06945 AL390838.2-201ENST00000602394 274 ntBASIC6.52□□□□□ -1.37
SOX4Q06945 CYCSP1-201ENST00000604815 315 ntBASIC6.52□□□□□ -1.37
SOX4Q06945 AC107214.2-201ENST00000608204 634 ntBASIC6.52□□□□□ -1.37
SOX4Q06945 MIR6793-201ENST00000612376 63 ntBASIC6.52□□□□□ -1.37
SOX4Q06945 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC6.52□□□□□ -1.37
SOX4Q06945 OR8G7P-201ENST00000616658 848 ntBASIC6.52□□□□□ -1.37
SOX4Q06945 AC120349.2-201ENST00000625002 298 ntBASIC6.52□□□□□ -1.37
SOX4Q06945 MIR6863-201ENST00000636112 90 ntBASIC6.52□□□□□ -1.37
SOX4Q06945 POM121L2-202ENST00000444565 3108 ntAPPRIS P2 BASIC6.52□□□□□ -1.37
SOX4Q06945 ATP1A1-203ENST00000369496 3572 ntTSL 2 BASIC6.52□□□□□ -1.37
SOX4Q06945 CCDC68-201ENST00000337363 1457 ntAPPRIS P1 TSL 2 BASIC6.52□□□□□ -1.37
SOX4Q06945 DNAH17-202ENST00000585328 13708 ntAPPRIS ALT2 TSL 5 BASIC6.52□□□□□ -1.37
SOX4Q06945 ZSCAN26-201ENST00000316606 2362 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
SOX4Q06945 MLLT10-217ENST00000631589 4955 ntAPPRIS ALT2 TSL 5 BASIC6.52□□□□□ -1.37
SOX4Q06945 CWF19L2-201ENST00000282251 3278 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
SOX4Q06945 ZNF106-201ENST00000263805 10460 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
SOX4Q06945 FANCD2-205ENST00000431693 2450 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
SOX4Q06945 FCGR1B-209ENST00000616817 1584 ntAPPRIS ALT2 TSL 5 BASIC6.52□□□□□ -1.37
SOX4Q06945 UNC13B-210ENST00000636694 8012 ntTSL 5 BASIC6.51□□□□□ -1.37
SOX4Q06945 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC6.51□□□□□ -1.37
SOX4Q06945 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC6.51□□□□□ -1.37
SOX4Q06945 STAG2-202ENST00000371144 4281 ntAPPRIS P3 TSL 1 (best) BASIC6.51□□□□□ -1.37
SOX4Q06945 AC106872.5-201ENST00000508856 1416 ntBASIC6.51□□□□□ -1.37
SOX4Q06945 GPATCH2-202ENST00000366935 5851 ntAPPRIS P1 TSL 2 BASIC6.51□□□□□ -1.37
SOX4Q06945 LINC01470-202ENST00000506723 2193 ntTSL 2 BASIC6.51□□□□□ -1.37
SOX4Q06945 NBPF9-205ENST00000613595 4527 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
SOX4Q06945 KNL1-201ENST00000346991 9573 ntAPPRIS P4 TSL 1 (best) BASIC6.51□□□□□ -1.37
SOX4Q06945 OR56A3-201ENST00000329564 948 ntAPPRIS P1 BASIC6.51□□□□□ -1.37
SOX4Q06945 NAMPT-202ENST00000354289 1213 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
SOX4Q06945 Y_RNA.160-201ENST00000363677 92 ntBASIC6.51□□□□□ -1.37
SOX4Q06945 Y_RNA.573-201ENST00000384763 105 ntBASIC6.51□□□□□ -1.37
SOX4Q06945 RNU2-42P-201ENST00000410697 113 ntBASIC6.51□□□□□ -1.37
SOX4Q06945 BX284632.2-201ENST00000421091 399 ntBASIC6.51□□□□□ -1.37
SOX4Q06945 ICA1L-210ENST00000425178 879 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
SOX4Q06945 C1orf140-201ENST00000434398 645 ntTSL 3 BASIC6.51□□□□□ -1.37
SOX4Q06945 PA2G4P6-201ENST00000438325 1197 ntBASIC6.51□□□□□ -1.37
SOX4Q06945 AP000365.1-201ENST00000438850 546 ntTSL 4 BASIC6.51□□□□□ -1.37
SOX4Q06945 AL512605.1-202ENST00000441919 381 ntBASIC6.51□□□□□ -1.37
SOX4Q06945 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC6.51□□□□□ -1.37
SOX4Q06945 AL359955.2-201ENST00000445380 353 ntBASIC6.51□□□□□ -1.37
SOX4Q06945 AC010894.4-201ENST00000454203 457 ntTSL 3 BASIC6.51□□□□□ -1.37
SOX4Q06945 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC6.51□□□□□ -1.37
SOX4Q06945 UBFD1P1-201ENST00000473259 814 ntBASIC6.51□□□□□ -1.37
SOX4Q06945 LARP1BP2-201ENST00000486594 519 ntBASIC6.51□□□□□ -1.37
SOX4Q06945 HMGN1P12-201ENST00000499125 195 ntBASIC6.51□□□□□ -1.37
SOX4Q06945 DUTP7-201ENST00000507982 486 ntBASIC6.51□□□□□ -1.37
SOX4Q06945 AC116616.1-201ENST00000508815 366 ntTSL 3 BASIC6.51□□□□□ -1.37
SOX4Q06945 AC096754.1-201ENST00000508904 818 ntBASIC6.51□□□□□ -1.37
SOX4Q06945 AC026434.1-201ENST00000511474 454 ntTSL 3 BASIC6.51□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 101.8 ms