Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AC018731.1-201ENST00000447078 576 ntTSL 4 BASIC5.36□□□□□ -1.55
COL5A3P25940 U8.18-201ENST00000459285 133 ntBASIC5.36□□□□□ -1.55
COL5A3P25940 RNA5SP497-201ENST00000516081 97 ntBASIC5.36□□□□□ -1.55
COL5A3P25940 AC087439.2-201ENST00000519498 552 ntTSL 3 BASIC5.36□□□□□ -1.55
COL5A3P25940 AC079598.1-201ENST00000548691 554 ntTSL 4 BASIC5.36□□□□□ -1.55
COL5A3P25940 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC5.36□□□□□ -1.55
COL5A3P25940 AC008752.1-201ENST00000590046 408 ntTSL 3 BASIC5.36□□□□□ -1.55
COL5A3P25940 AC008833.1-201ENST00000611633 691 ntBASIC5.36□□□□□ -1.55
COL5A3P25940 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC5.36□□□□□ -1.55
COL5A3P25940 OR5BE1P-202ENST00000641168 1176 ntBASIC5.36□□□□□ -1.55
COL5A3P25940 SGIP1-204ENST00000371039 4080 ntAPPRIS ALT2 TSL 1 (best) BASIC5.36□□□□□ -1.55
COL5A3P25940 BIRC6-201ENST00000421745 15703 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
COL5A3P25940 RGSL1-201ENST00000294854 3696 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
COL5A3P25940 AL672167.1-204ENST00000641875 3017 ntBASIC5.36□□□□□ -1.55
COL5A3P25940 KMT2E-216ENST00000622386 1588 ntTSL 5 BASIC5.36□□□□□ -1.55
COL5A3P25940 CHD8-202ENST00000430710 7420 ntAPPRIS P3 TSL 1 (best) BASIC5.35□□□□□ -1.55
COL5A3P25940 CHMP1B2P-202ENST00000614414 6813 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
COL5A3P25940 RAB30-212ENST00000533486 9929 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
COL5A3P25940 HGF-201ENST00000222390 5989 ntAPPRIS P3 TSL 1 (best) BASIC5.35□□□□□ -1.55
COL5A3P25940 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC5.35□□□□□ -1.55
COL5A3P25940 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC5.35□□□□□ -1.55
COL5A3P25940 ABI2-204ENST00000295851 22209 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
COL5A3P25940 PCDH15-214ENST00000395446 3948 ntTSL 5 BASIC5.35□□□□□ -1.55
COL5A3P25940 KLRC4-KLRK1-201ENST00000539300 1507 ntAPPRIS P5 TSL 2 BASIC5.35□□□□□ -1.55
COL5A3P25940 FOXP2-220ENST00000634411 4065 ntTSL 5 BASIC5.35□□□□□ -1.55
COL5A3P25940 AC009237.5-201ENST00000414271 501 ntBASIC5.35□□□□□ -1.55
COL5A3P25940 RPS26P4-201ENST00000431743 355 ntBASIC5.35□□□□□ -1.55
COL5A3P25940 CEACAMP1-201ENST00000434624 1035 ntBASIC5.35□□□□□ -1.55
COL5A3P25940 NOTCH2P1-201ENST00000443481 624 ntBASIC5.35□□□□□ -1.55
COL5A3P25940 AC023442.3-203ENST00000530946 533 ntTSL 4 BASIC5.35□□□□□ -1.55
COL5A3P25940 YPEL5P3-201ENST00000547227 352 ntBASIC5.35□□□□□ -1.55
COL5A3P25940 AL049779.1-201ENST00000553306 670 ntTSL 2 BASIC5.35□□□□□ -1.55
COL5A3P25940 AC090912.3-201ENST00000609775 533 ntBASIC5.35□□□□□ -1.55
COL5A3P25940 AL021997.2-201ENST00000615674 271 ntBASIC5.35□□□□□ -1.55
COL5A3P25940 EIF3EP2-201ENST00000423042 1814 ntBASIC5.35□□□□□ -1.55
COL5A3P25940 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC5.35□□□□□ -1.55
COL5A3P25940 EXO1-208ENST00000518483 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC5.35□□□□□ -1.55
COL5A3P25940 STRBP-204ENST00000447404 6161 ntAPPRIS P1 TSL 2 BASIC5.35□□□□□ -1.55
COL5A3P25940 TES-202ENST00000393481 2763 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
COL5A3P25940 ZNF567-203ENST00000585696 3734 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
COL5A3P25940 PLA2R1-201ENST00000283243 14371 ntAPPRIS P3 TSL 1 (best) BASIC5.35□□□□□ -1.55
COL5A3P25940 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC5.35□□□□□ -1.55
COL5A3P25940 ZNF268-205ENST00000536435 13475 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
COL5A3P25940 DLG2-207ENST00000398309 7890 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
COL5A3P25940 HECTD4-211ENST00000550722 15450 ntAPPRIS ALT2 TSL 5 BASIC5.35□□□□□ -1.55
COL5A3P25940 NHS-205ENST00000617601 8163 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
COL5A3P25940 NPVF-201ENST00000222674 1190 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
COL5A3P25940 MIR133A2-201ENST00000347538 102 ntBASIC5.34□□□□□ -1.55
COL5A3P25940 AL672167.2-201ENST00000377164 879 ntBASIC5.34□□□□□ -1.55
COL5A3P25940 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC5.34□□□□□ -1.55
COL5A3P25940 AL592291.1-201ENST00000403830 352 ntBASIC5.34□□□□□ -1.55
COL5A3P25940 HSPE1P12-201ENST00000412576 301 ntBASIC5.34□□□□□ -1.55
COL5A3P25940 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC5.34□□□□□ -1.55
COL5A3P25940 YME1L1P1-201ENST00000429435 297 ntBASIC5.34□□□□□ -1.55
COL5A3P25940 NADK2-AS1-201ENST00000501794 720 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
COL5A3P25940 AC026726.1-201ENST00000512859 601 ntBASIC5.34□□□□□ -1.55
COL5A3P25940 RNA5SP303-201ENST00000516192 130 ntBASIC5.34□□□□□ -1.55
COL5A3P25940 AC109635.6-201ENST00000525487 1113 ntBASIC5.34□□□□□ -1.55
COL5A3P25940 AMZ2-204ENST00000577273 895 ntTSL 5 BASIC5.34□□□□□ -1.55
COL5A3P25940 MIR5685-201ENST00000579080 79 ntBASIC5.34□□□□□ -1.55
COL5A3P25940 AL031658.2-201ENST00000616850 651 ntBASIC5.34□□□□□ -1.55
COL5A3P25940 CA1-225ENST00000626824 2405 ntTSL 5 BASIC5.34□□□□□ -1.55
COL5A3P25940 LINC02227-201ENST00000619068 3748 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
COL5A3P25940 SCN1A-217ENST00000637988 8562 ntAPPRIS P3 TSL 5 BASIC5.34□□□□□ -1.55
COL5A3P25940 DNAH17-201ENST00000389840 13723 ntAPPRIS P5 TSL 5 BASIC5.34□□□□□ -1.55
COL5A3P25940 OFD1P5Y-201ENST00000447585 2590 ntBASIC5.34□□□□□ -1.55
COL5A3P25940 DTNA-231ENST00000598774 2418 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
COL5A3P25940 PLEKHG1-201ENST00000358517 7138 ntAPPRIS P1 TSL 5 BASIC5.34□□□□□ -1.55
COL5A3P25940 GCSAML-201ENST00000366488 3820 ntAPPRIS P3 TSL 1 (best) BASIC5.34□□□□□ -1.55
COL5A3P25940 ZNF525-201ENST00000467003 6107 ntTSL 4 BASIC5.34□□□□□ -1.55
COL5A3P25940 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
COL5A3P25940 RRP15-201ENST00000366932 7771 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
COL5A3P25940 MED13-201ENST00000397786 10465 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
COL5A3P25940 USP9YP4-201ENST00000424401 1745 ntBASIC5.34□□□□□ -1.55
COL5A3P25940 CYLD-201ENST00000311559 5371 ntTSL 5 BASIC5.34□□□□□ -1.56
COL5A3P25940 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC5.34□□□□□ -1.56
COL5A3P25940 GLYAT-201ENST00000278400 1150 ntTSL 1 (best) BASIC5.34□□□□□ -1.56
COL5A3P25940 AL590609.3-201ENST00000411815 210 ntTSL 3 BASIC5.34□□□□□ -1.56
COL5A3P25940 ARPP21-211ENST00000427542 568 ntTSL 4 BASIC5.34□□□□□ -1.56
COL5A3P25940 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC5.34□□□□□ -1.56
COL5A3P25940 NANOGP10-201ENST00000453325 895 ntBASIC5.34□□□□□ -1.56
COL5A3P25940 RPL7P22-201ENST00000466005 733 ntBASIC5.34□□□□□ -1.56
COL5A3P25940 RPL23AP37-201ENST00000479658 549 ntBASIC5.34□□□□□ -1.56
COL5A3P25940 AC015468.4-201ENST00000523496 568 ntTSL 4 BASIC5.34□□□□□ -1.56
COL5A3P25940 AC004801.3-201ENST00000547602 962 ntTSL 1 (best) BASIC5.34□□□□□ -1.56
COL5A3P25940 HMGB2P1-201ENST00000591146 634 ntBASIC5.34□□□□□ -1.56
COL5A3P25940 COX6CP4-201ENST00000605798 228 ntBASIC5.34□□□□□ -1.56
COL5A3P25940 AC069200.1-201ENST00000609511 323 ntBASIC5.34□□□□□ -1.56
COL5A3P25940 AL353726.1-201ENST00000614041 1000 ntBASIC5.34□□□□□ -1.56
COL5A3P25940 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC5.34□□□□□ -1.56
COL5A3P25940 AF067845.5-201ENST00000633906 437 ntTSL 3 BASIC5.34□□□□□ -1.56
COL5A3P25940 MUC4-215ENST00000475231 16273 ntAPPRIS ALT2 TSL 5 BASIC5.34□□□□□ -1.56
COL5A3P25940 TMPRSS11F-201ENST00000356291 2088 ntAPPRIS P1 TSL 2 BASIC5.34□□□□□ -1.56
COL5A3P25940 FGF1-202ENST00000359370 3660 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.56
COL5A3P25940 AL390036.1-202ENST00000634635 2439 ntTSL 5 BASIC5.34□□□□□ -1.56
COL5A3P25940 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
COL5A3P25940 SLX4IP-201ENST00000334534 6062 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
COL5A3P25940 GPBP1-204ENST00000506184 2857 ntAPPRIS P3 TSL 1 (best) BASIC5.33□□□□□ -1.56
COL5A3P25940 AP000473.2-201ENST00000602659 1537 ntBASIC5.33□□□□□ -1.56
COL5A3P25940 IQCH-202ENST00000358767 3062 ntTSL 5 BASIC5.33□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 82.9 ms