Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 RPL7L1P13-201ENST00000511702 739 ntBASIC5.43□□□□□ -1.54
BDNFP23560 BUD31P1-201ENST00000521828 359 ntBASIC5.43□□□□□ -1.54
BDNFP23560 AC130462.1-201ENST00000548144 549 ntTSL 5 BASIC5.43□□□□□ -1.54
BDNFP23560 AC079148.1-201ENST00000565944 819 ntBASIC5.43□□□□□ -1.54
BDNFP23560 AC010528.1-201ENST00000568714 739 ntTSL 4 BASIC5.43□□□□□ -1.54
BDNFP23560 AC027455.1-201ENST00000574104 594 ntBASIC5.43□□□□□ -1.54
BDNFP23560 AL109935.2-201ENST00000587737 395 ntTSL 5 BASIC5.43□□□□□ -1.54
BDNFP23560 AC010618.3-202ENST00000598141 476 ntTSL 3 BASIC5.43□□□□□ -1.54
BDNFP23560 AC010680.3-201ENST00000604215 520 ntBASIC5.43□□□□□ -1.54
BDNFP23560 BNIP3P35-201ENST00000604530 490 ntBASIC5.43□□□□□ -1.54
BDNFP23560 AC024940.4-201ENST00000605507 246 ntBASIC5.43□□□□□ -1.54
BDNFP23560 STARD13-AS-235ENST00000609335 855 ntTSL 5 BASIC5.43□□□□□ -1.54
BDNFP23560 DEC1-204ENST00000614246 210 ntAPPRIS ALT2 TSL 1 (best) BASIC5.43□□□□□ -1.54
BDNFP23560 AC234782.5-201ENST00000617723 324 ntBASIC5.43□□□□□ -1.54
BDNFP23560 AL023881.1-201ENST00000621088 301 ntBASIC5.43□□□□□ -1.54
BDNFP23560 AC138907.10-201ENST00000623708 983 ntBASIC5.43□□□□□ -1.54
BDNFP23560 CCDC195-201ENST00000638102 606 ntAPPRIS P1 TSL 5 BASIC5.43□□□□□ -1.54
BDNFP23560 PSMA8-205ENST00000612461 1619 ntTSL 5 BASIC5.43□□□□□ -1.54
BDNFP23560 PPEF1-201ENST00000349874 2687 ntTSL 5 BASIC5.43□□□□□ -1.54
BDNFP23560 LIMA1-212ENST00000552491 2652 ntAPPRIS ALT2 TSL 2 BASIC5.43□□□□□ -1.54
BDNFP23560 USP44-208ENST00000552440 1818 ntTSL 5 BASIC5.43□□□□□ -1.54
BDNFP23560 AC083843.3-201ENST00000623679 2186 ntBASIC5.43□□□□□ -1.54
BDNFP23560 AC004803.1-201ENST00000503602 3207 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
BDNFP23560 CDK14-203ENST00000406263 5163 ntAPPRIS ALT2 TSL 1 (best) BASIC5.43□□□□□ -1.54
BDNFP23560 CTAGE5-207ENST00000396165 3071 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
BDNFP23560 NCOA3-201ENST00000371997 6750 ntAPPRIS ALT2 TSL 1 (best) BASIC5.43□□□□□ -1.54
BDNFP23560 AC068446.1-201ENST00000556425 1549 ntBASIC5.43□□□□□ -1.54
BDNFP23560 AL450345.1-202ENST00000605741 3881 ntBASIC5.43□□□□□ -1.54
BDNFP23560 DSE-204ENST00000452085 10586 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
BDNFP23560 SCN2A-203ENST00000375437 8792 ntAPPRIS ALT1 TSL 5 BASIC5.43□□□□□ -1.54
BDNFP23560 AC119744.1-201ENST00000454746 1715 ntBASIC5.43□□□□□ -1.54
BDNFP23560 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC5.42□□□□□ -1.54
BDNFP23560 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC5.42□□□□□ -1.54
BDNFP23560 POT1-AS1-205ENST00000453342 3252 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
BDNFP23560 ERVFRD-3-201ENST00000578561 1617 ntBASIC5.42□□□□□ -1.54
BDNFP23560 MYO5A-201ENST00000356338 11971 ntAPPRIS ALT1 TSL 1 (best) BASIC5.42□□□□□ -1.54
BDNFP23560 ZNF33CP-201ENST00000432492 2030 ntBASIC5.42□□□□□ -1.54
BDNFP23560 LRIT3-201ENST00000327908 3781 ntTSL 2 BASIC5.42□□□□□ -1.54
BDNFP23560 AC104793.1-201ENST00000508189 2840 ntTSL 2 BASIC5.42□□□□□ -1.54
BDNFP23560 C1orf105-201ENST00000367725 888 ntTSL 2 BASIC5.42□□□□□ -1.54
BDNFP23560 ATP5F1P2-201ENST00000398143 760 ntBASIC5.42□□□□□ -1.54
BDNFP23560 RN7SKP125-201ENST00000410481 302 ntBASIC5.42□□□□□ -1.54
BDNFP23560 PCDH9-AS2-201ENST00000419371 538 ntTSL 3 BASIC5.42□□□□□ -1.54
BDNFP23560 DDX39BP1-205ENST00000422507 192 ntBASIC5.42□□□□□ -1.54
BDNFP23560 AC008065.1-201ENST00000428525 348 ntBASIC5.42□□□□□ -1.54
BDNFP23560 RPS27P18-201ENST00000431701 247 ntBASIC5.42□□□□□ -1.54
BDNFP23560 RPS26P40-201ENST00000435209 294 ntBASIC5.42□□□□□ -1.54
BDNFP23560 DIAPH3-AS1-203ENST00000435636 467 ntTSL 2 BASIC5.42□□□□□ -1.54
BDNFP23560 AC009299.3-203ENST00000435692 1096 ntTSL 5 BASIC5.42□□□□□ -1.54
BDNFP23560 RHOT1P3-201ENST00000436571 331 ntBASIC5.42□□□□□ -1.54
BDNFP23560 NPM1P33-201ENST00000438918 872 ntBASIC5.42□□□□□ -1.54
BDNFP23560 AL450472.1-201ENST00000439434 405 ntTSL 2 BASIC5.42□□□□□ -1.54
BDNFP23560 CLEC5A-203ENST00000439991 501 ntTSL 3 BASIC5.42□□□□□ -1.54
BDNFP23560 AL162419.1-201ENST00000440674 873 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
BDNFP23560 RPL34P20-201ENST00000442771 351 ntBASIC5.42□□□□□ -1.54
BDNFP23560 LINC01767-201ENST00000451914 545 ntTSL 2 BASIC5.42□□□□□ -1.54
BDNFP23560 AL035446.1-201ENST00000455011 453 ntTSL 5 BASIC5.42□□□□□ -1.54
BDNFP23560 GYPB-202ENST00000502664 521 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
BDNFP23560 MTATP6P22-201ENST00000507369 598 ntBASIC5.42□□□□□ -1.54
BDNFP23560 SNHG27-202ENST00000507933 491 ntTSL 2 BASIC5.42□□□□□ -1.54
BDNFP23560 AC084871.1-201ENST00000508020 628 ntTSL 3 BASIC5.42□□□□□ -1.54
BDNFP23560 AC008565.1-201ENST00000509046 885 ntBASIC5.42□□□□□ -1.54
BDNFP23560 RN7SKP260-201ENST00000516907 149 ntBASIC5.42□□□□□ -1.54
BDNFP23560 AC073023.1-201ENST00000522896 773 ntTSL 5 BASIC5.42□□□□□ -1.54
BDNFP23560 C1DP5-201ENST00000525775 383 ntBASIC5.42□□□□□ -1.54
BDNFP23560 C14orf105-210ENST00000534126 1030 ntAPPRIS ALT1 TSL 1 (best) BASIC5.42□□□□□ -1.54
BDNFP23560 SDHAF2-205ENST00000537782 559 ntTSL 4 BASIC5.42□□□□□ -1.54
BDNFP23560 PYM1-205ENST00000547925 499 ntTSL 3 BASIC5.42□□□□□ -1.54
BDNFP23560 AC034102.2-201ENST00000548861 489 ntAPPRIS P1 TSL 5 BASIC5.42□□□□□ -1.54
BDNFP23560 DYNLL1P4-201ENST00000549314 266 ntBASIC5.42□□□□□ -1.54
BDNFP23560 AC022929.1-201ENST00000560675 823 ntTSL 3 BASIC5.42□□□□□ -1.54
BDNFP23560 MIR4691-201ENST00000583764 85 ntBASIC5.42□□□□□ -1.54
BDNFP23560 GMFG-202ENST00000594700 397 ntTSL 2 BASIC5.42□□□□□ -1.54
BDNFP23560 LINC01676-204ENST00000595309 871 ntTSL 5 BASIC5.42□□□□□ -1.54
BDNFP23560 AP005432.2-201ENST00000608162 586 ntBASIC5.42□□□□□ -1.54
BDNFP23560 AL627230.1-201ENST00000613077 211 ntBASIC5.42□□□□□ -1.54
BDNFP23560 EIF3FP1-201ENST00000613970 806 ntBASIC5.42□□□□□ -1.54
BDNFP23560 AL591926.8-201ENST00000616876 211 ntBASIC5.42□□□□□ -1.54
BDNFP23560 MIR6864-201ENST00000617935 70 ntBASIC5.42□□□□□ -1.54
BDNFP23560 LEUTX-202ENST00000638280 667 ntAPPRIS P1 TSL 3 BASIC5.42□□□□□ -1.54
BDNFP23560 FAM197Y3-202ENST00000427622 2325 ntTSL 5 BASIC5.42□□□□□ -1.54
BDNFP23560 FAM197Y7-202ENST00000433321 2325 ntTSL 2 BASIC5.42□□□□□ -1.54
BDNFP23560 ARHGEF6-203ENST00000370622 4779 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
BDNFP23560 AC120338.1-201ENST00000625074 1541 ntBASIC5.42□□□□□ -1.54
BDNFP23560 ZNF652P1-201ENST00000442420 1309 ntBASIC5.42□□□□□ -1.54
BDNFP23560 PSMA4-201ENST00000044462 4411 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
BDNFP23560 MFAP1-201ENST00000267812 2155 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
BDNFP23560 FAM216B-201ENST00000313851 3243 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
BDNFP23560 ERCC6-202ENST00000374127 1782 ntBASIC5.42□□□□□ -1.54
BDNFP23560 IRAK4-203ENST00000448290 1381 ntTSL 5 BASIC5.42□□□□□ -1.54
BDNFP23560 DOCK10-202ENST00000409592 7288 ntAPPRIS ALT2 TSL 1 (best) BASIC5.41□□□□□ -1.54
BDNFP23560 MAP2-205ENST00000392194 5303 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
BDNFP23560 PLEKHA1-203ENST00000368990 14010 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
BDNFP23560 STARD9-201ENST00000290607 15567 ntAPPRIS P1 TSL 5 BASIC5.41□□□□□ -1.54
BDNFP23560 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC5.41□□□□□ -1.54
BDNFP23560 HHLA2-210ENST00000491820 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC5.41□□□□□ -1.54
BDNFP23560 LINC01902-203ENST00000637369 7356 ntTSL 5 BASIC5.41□□□□□ -1.54
BDNFP23560 FAM197Y9-201ENST00000451062 2332 ntTSL 5 BASIC5.41□□□□□ -1.54
BDNFP23560 NSD1-202ENST00000354179 12195 ntTSL 5 BASIC5.41□□□□□ -1.54
BDNFP23560 HSP90AA5P-201ENST00000438353 2192 ntBASIC5.41□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 86 ms