Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 LINC00448-202ENST00000448411 433 ntTSL 2 BASIC4.83□□□□□ -1.64
MSH3P20585 AC011196.1-201ENST00000451816 595 ntTSL 2 BASIC4.83□□□□□ -1.64
MSH3P20585 AL645937.3-201ENST00000453647 936 ntBASIC4.83□□□□□ -1.64
MSH3P20585 HIGD1AP8-201ENST00000453927 274 ntBASIC4.83□□□□□ -1.64
MSH3P20585 AL023584.2-201ENST00000454411 444 ntTSL 5 BASIC4.83□□□□□ -1.64
MSH3P20585 AC078883.3-201ENST00000458314 512 ntTSL 2 BASIC4.83□□□□□ -1.64
MSH3P20585 RN7SL826P-201ENST00000479724 288 ntBASIC4.83□□□□□ -1.64
MSH3P20585 RPL7AP10-201ENST00000481016 791 ntBASIC4.83□□□□□ -1.64
MSH3P20585 AC090686.1-201ENST00000481577 749 ntBASIC4.83□□□□□ -1.64
MSH3P20585 NPM1P29-201ENST00000483112 803 ntBASIC4.83□□□□□ -1.64
MSH3P20585 AC020890.1-201ENST00000491837 504 ntBASIC4.83□□□□□ -1.64
MSH3P20585 GYPB-202ENST00000502664 521 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
MSH3P20585 AC073358.1-201ENST00000505671 684 ntBASIC4.83□□□□□ -1.64
MSH3P20585 AC006063.1-201ENST00000512511 560 ntTSL 4 BASIC4.83□□□□□ -1.64
MSH3P20585 AC109830.1-202ENST00000515491 860 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
MSH3P20585 AC016885.1-201ENST00000517796 532 ntTSL 4 BASIC4.83□□□□□ -1.64
MSH3P20585 THUMPD3-AS1-210ENST00000519043 1115 ntTSL 3 BASIC4.83□□□□□ -1.64
MSH3P20585 SKP1-208ENST00000521216 899 ntAPPRIS ALT1 TSL 5 BASIC4.83□□□□□ -1.64
MSH3P20585 AC104248.1-202ENST00000524134 486 ntTSL 5 BASIC4.83□□□□□ -1.64
MSH3P20585 UBTFL9-201ENST00000534504 1148 ntBASIC4.83□□□□□ -1.64
MSH3P20585 GCSHP4-201ENST00000538792 439 ntBASIC4.83□□□□□ -1.64
MSH3P20585 AC004217.2-201ENST00000547401 751 ntTSL 3 BASIC4.83□□□□□ -1.64
MSH3P20585 PCNPP1-201ENST00000552501 511 ntBASIC4.83□□□□□ -1.64
MSH3P20585 AC025423.4-201ENST00000553141 785 ntTSL 3 BASIC4.83□□□□□ -1.64
MSH3P20585 AL591770.1-201ENST00000554475 1131 ntTSL 3 BASIC4.83□□□□□ -1.64
MSH3P20585 AC142086.4-201ENST00000568904 650 ntTSL 3 BASIC4.83□□□□□ -1.64
MSH3P20585 OR1F2P-201ENST00000570470 933 ntBASIC4.83□□□□□ -1.64
MSH3P20585 MIR3934-201ENST00000579806 107 ntBASIC4.83□□□□□ -1.64
MSH3P20585 AC135178.3-202ENST00000580537 579 ntTSL 3 BASIC4.83□□□□□ -1.64
MSH3P20585 OR1AB1P-201ENST00000585564 761 ntBASIC4.83□□□□□ -1.64
MSH3P20585 AC005084.1-201ENST00000605160 304 ntBASIC4.83□□□□□ -1.64
MSH3P20585 AL355816.2-201ENST00000610049 647 ntBASIC4.83□□□□□ -1.64
MSH3P20585 MIR8069-1-201ENST00000616627 86 ntBASIC4.83□□□□□ -1.64
MSH3P20585 MIR8069-2-201ENST00000621412 86 ntBASIC4.83□□□□□ -1.64
MSH3P20585 AP001005.3-201ENST00000622049 129 ntBASIC4.83□□□□□ -1.64
MSH3P20585 AC012414.7-202ENST00000622705 1090 ntBASIC4.83□□□□□ -1.64
MSH3P20585 AC068880.4-201ENST00000623082 495 ntBASIC4.83□□□□□ -1.64
MSH3P20585 DCDC1-211ENST00000597505 5352 ntAPPRIS ALT2 TSL 5 BASIC4.83□□□□□ -1.64
MSH3P20585 ADCY10-202ENST00000367851 5051 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
MSH3P20585 SLCO1B7-201ENST00000421593 1923 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
MSH3P20585 HSD17B11-201ENST00000358290 1885 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
MSH3P20585 ACSL5-204ENST00000393081 3380 ntAPPRIS P1 TSL 5 BASIC4.83□□□□□ -1.64
MSH3P20585 AC093775.1-201ENST00000624154 1868 ntBASIC4.83□□□□□ -1.64
MSH3P20585 EYA1-205ENST00000388742 3907 ntAPPRIS P3 TSL 1 (best) BASIC4.83□□□□□ -1.64
MSH3P20585 LIPF-203ENST00000394375 1470 ntTSL 2 BASIC4.82□□□□□ -1.64
MSH3P20585 MTCO1P4-201ENST00000520516 1409 ntBASIC4.82□□□□□ -1.64
MSH3P20585 AC009643.2-201ENST00000603543 1448 ntBASIC4.82□□□□□ -1.64
MSH3P20585 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC4.82□□□□□ -1.64
MSH3P20585 POU2F1-206ENST00000429375 13651 ntAPPRIS ALT2 TSL 2 BASIC4.82□□□□□ -1.64
MSH3P20585 OSGEPL1-201ENST00000264151 1885 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
MSH3P20585 ZNF679-201ENST00000255746 1297 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
MSH3P20585 OR52N4-201ENST00000317254 1037 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
MSH3P20585 RNA5SP105-201ENST00000391123 113 ntBASIC4.82□□□□□ -1.64
MSH3P20585 LINC01507-201ENST00000417801 446 ntTSL 5 BASIC4.82□□□□□ -1.64
MSH3P20585 AL590432.1-201ENST00000420071 566 ntTSL 2 BASIC4.82□□□□□ -1.64
MSH3P20585 MRPL50P1-201ENST00000431951 384 ntBASIC4.82□□□□□ -1.64
MSH3P20585 HMGB3P10-201ENST00000434734 572 ntBASIC4.82□□□□□ -1.64
MSH3P20585 AL121957.1-202ENST00000437040 329 ntTSL 3 BASIC4.82□□□□□ -1.64
MSH3P20585 AC073648.4-201ENST00000442655 781 ntBASIC4.82□□□□□ -1.64
MSH3P20585 AL357052.1-201ENST00000443504 381 ntTSL 3 BASIC4.82□□□□□ -1.64
MSH3P20585 HMGN1P5-201ENST00000448591 263 ntBASIC4.82□□□□□ -1.64
MSH3P20585 OR52J1P-201ENST00000450596 932 ntBASIC4.82□□□□□ -1.64
MSH3P20585 AL353152.1-201ENST00000455973 470 ntTSL 5 BASIC4.82□□□□□ -1.64
MSH3P20585 CYCSP34-201ENST00000458172 304 ntBASIC4.82□□□□□ -1.64
MSH3P20585 RPL23AP56-201ENST00000460778 453 ntBASIC4.82□□□□□ -1.64
MSH3P20585 AC107015.1-201ENST00000466902 747 ntBASIC4.82□□□□□ -1.64
MSH3P20585 AC008410.1-201ENST00000483777 339 ntBASIC4.82□□□□□ -1.64
MSH3P20585 RN7SL205P-201ENST00000490174 284 ntBASIC4.82□□□□□ -1.64
MSH3P20585 AC093801.2-201ENST00000503966 1050 ntBASIC4.82□□□□□ -1.64
MSH3P20585 AC084871.1-201ENST00000508020 628 ntTSL 3 BASIC4.82□□□□□ -1.64
MSH3P20585 AC104119.1-201ENST00000508829 339 ntTSL 5 BASIC4.82□□□□□ -1.64
MSH3P20585 AC021192.1-201ENST00000510169 791 ntTSL 3 BASIC4.82□□□□□ -1.64
MSH3P20585 LINC02265-201ENST00000510551 957 ntTSL 2 BASIC4.82□□□□□ -1.64
MSH3P20585 SCARNA1-201ENST00000517138 166 ntBASIC4.82□□□□□ -1.64
MSH3P20585 OR5M11-201ENST00000528616 1020 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
MSH3P20585 AC005868.1-201ENST00000536421 331 ntBASIC4.82□□□□□ -1.64
MSH3P20585 AL590385.2-201ENST00000537821 553 ntTSL 5 BASIC4.82□□□□□ -1.64
MSH3P20585 C8orf59-206ENST00000545322 491 ntTSL 3 BASIC4.82□□□□□ -1.64
MSH3P20585 GPATCH2L-203ENST00000553588 776 ntTSL 2 BASIC4.82□□□□□ -1.64
MSH3P20585 AL049839.1-201ENST00000556151 657 ntBASIC4.82□□□□□ -1.64
MSH3P20585 AC007599.2-201ENST00000573040 493 ntTSL 5 BASIC4.82□□□□□ -1.64
MSH3P20585 MIR4436B2-201ENST00000581415 91 ntBASIC4.82□□□□□ -1.64
MSH3P20585 MIR4436B1-201ENST00000583272 91 ntBASIC4.82□□□□□ -1.64
MSH3P20585 ZNF836-203ENST00000597065 808 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
MSH3P20585 AC026979.4-201ENST00000606555 645 ntBASIC4.82□□□□□ -1.64
MSH3P20585 AC010424.2-201ENST00000607594 443 ntBASIC4.82□□□□□ -1.64
MSH3P20585 AC005156.1-201ENST00000613371 573 ntBASIC4.82□□□□□ -1.64
MSH3P20585 AC107398.4-201ENST00000635489 765 ntTSL 2 BASIC4.82□□□□□ -1.64
MSH3P20585 OR5AC4P-202ENST00000642086 985 ntBASIC4.82□□□□□ -1.64
MSH3P20585 ANO3-202ENST00000525139 3257 ntAPPRIS ALT1 TSL 5 BASIC4.82□□□□□ -1.64
MSH3P20585 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC4.82□□□□□ -1.64
MSH3P20585 SP110-202ENST00000258382 2080 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
MSH3P20585 SAMMSON-226ENST00000642089 1582 ntBASIC4.82□□□□□ -1.64
MSH3P20585 LUZP2-207ENST00000533227 5016 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
MSH3P20585 AC139713.2-215ENST00000641428 5037 ntBASIC4.82□□□□□ -1.64
MSH3P20585 MTRR-202ENST00000440940 3215 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
MSH3P20585 SLC44A5-201ENST00000370855 4406 ntAPPRIS P3 TSL 1 (best) BASIC4.81□□□□□ -1.64
MSH3P20585 AC126323.6-202ENST00000568092 3511 ntBASIC4.81□□□□□ -1.64
MSH3P20585 LINGO2-201ENST00000308675 3031 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
MSH3P20585 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC4.81□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 96.6 ms