Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 AC091212.1-201ENST00000474798 395 ntTSL 5 BASIC5.5□□□□□ -1.53
DKK3Q9UBP4 RPS4XP6-201ENST00000477670 797 ntBASIC5.5□□□□□ -1.53
DKK3Q9UBP4 RPL7P39-201ENST00000481157 744 ntBASIC5.5□□□□□ -1.53
DKK3Q9UBP4 NIP7P2-201ENST00000485801 544 ntBASIC5.5□□□□□ -1.53
DKK3Q9UBP4 RPS27AP16-201ENST00000492222 470 ntBASIC5.5□□□□□ -1.53
DKK3Q9UBP4 AC021193.1-201ENST00000511607 420 ntBASIC5.5□□□□□ -1.53
DKK3Q9UBP4 AC109830.1-202ENST00000515491 860 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
DKK3Q9UBP4 SCARNA16.4-201ENST00000516956 187 ntBASIC5.5□□□□□ -1.53
DKK3Q9UBP4 NDUFS5P6-201ENST00000529136 295 ntBASIC5.5□□□□□ -1.53
DKK3Q9UBP4 AC134775.1-201ENST00000531268 464 ntTSL 2 BASIC5.5□□□□□ -1.53
DKK3Q9UBP4 MIR100HG-213ENST00000531470 560 ntTSL 4 BASIC5.5□□□□□ -1.53
DKK3Q9UBP4 AL356057.1-201ENST00000533798 831 ntBASIC5.5□□□□□ -1.53
DKK3Q9UBP4 FAM222A-AS1-202ENST00000541460 751 ntTSL 4 BASIC5.5□□□□□ -1.53
DKK3Q9UBP4 AC039056.1-201ENST00000552704 467 ntTSL 3 BASIC5.5□□□□□ -1.53
DKK3Q9UBP4 GPATCH2L-203ENST00000553588 776 ntTSL 2 BASIC5.5□□□□□ -1.53
DKK3Q9UBP4 DUXAP6-201ENST00000553858 601 ntBASIC5.5□□□□□ -1.53
DKK3Q9UBP4 AL161757.4-204ENST00000557136 834 ntTSL 3 BASIC5.5□□□□□ -1.53
DKK3Q9UBP4 AC016987.1-201ENST00000558587 499 ntTSL 2 BASIC5.5□□□□□ -1.53
DKK3Q9UBP4 AC090617.5-201ENST00000571815 528 ntTSL 3 BASIC5.5□□□□□ -1.53
DKK3Q9UBP4 RN7SL622P-201ENST00000585292 275 ntBASIC5.5□□□□□ -1.53
DKK3Q9UBP4 AC011473.2-201ENST00000596286 240 ntTSL 3 BASIC5.5□□□□□ -1.53
DKK3Q9UBP4 AC010620.1-201ENST00000601088 1102 ntBASIC5.5□□□□□ -1.53
DKK3Q9UBP4 AC068790.2-201ENST00000602601 557 ntBASIC5.5□□□□□ -1.53
DKK3Q9UBP4 AL136164.2-201ENST00000602823 732 ntTSL 5 BASIC5.5□□□□□ -1.53
DKK3Q9UBP4 AL589740.1-208ENST00000606913 812 ntTSL 5 BASIC5.5□□□□□ -1.53
DKK3Q9UBP4 PRKCQ-AS1-208ENST00000608453 587 ntTSL 5 BASIC5.5□□□□□ -1.53
DKK3Q9UBP4 AL138478.1-201ENST00000612252 832 ntBASIC5.5□□□□□ -1.53
DKK3Q9UBP4 AL137078.2-201ENST00000615740 318 ntTSL 5 BASIC5.5□□□□□ -1.53
DKK3Q9UBP4 AL121895.2-201ENST00000619558 447 ntBASIC5.5□□□□□ -1.53
DKK3Q9UBP4 AC013470.4-201ENST00000619978 986 ntBASIC5.5□□□□□ -1.53
DKK3Q9UBP4 DLG2-AS1_1.1-201ENST00000622319 213 ntBASIC5.5□□□□□ -1.53
DKK3Q9UBP4 SEC31A-204ENST00000355196 4104 ntAPPRIS P4 TSL 2 BASIC5.5□□□□□ -1.53
DKK3Q9UBP4 PARP11-201ENST00000228820 4424 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
DKK3Q9UBP4 PARP11-203ENST00000427057 4406 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
DKK3Q9UBP4 SNRPB2-202ENST00000377943 1588 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
DKK3Q9UBP4 IQGAP2-203ENST00000396234 3376 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
DKK3Q9UBP4 PEX26-201ENST00000329627 18445 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
DKK3Q9UBP4 ENPP2-207ENST00000522167 1695 ntTSL 2 BASIC5.5□□□□□ -1.53
DKK3Q9UBP4 AC007342.7-201ENST00000624610 2337 ntBASIC5.49□□□□□ -1.53
DKK3Q9UBP4 KCNH7-205ENST00000621889 1893 ntTSL 5 BASIC5.49□□□□□ -1.53
DKK3Q9UBP4 ZNF615-213ENST00000602063 4094 ntAPPRIS P3 TSL 5 BASIC5.49□□□□□ -1.53
DKK3Q9UBP4 CNTN5-201ENST00000279463 5925 ntTSL 5 BASIC5.49□□□□□ -1.53
DKK3Q9UBP4 PTCD2-202ENST00000380639 11151 ntAPPRIS P1 TSL 5 BASIC5.49□□□□□ -1.53
DKK3Q9UBP4 FOXP2-209ENST00000393498 2617 ntTSL 5 BASIC5.49□□□□□ -1.53
DKK3Q9UBP4 ABCA6-206ENST00000590645 1511 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
DKK3Q9UBP4 PTK2-206ENST00000517712 3351 ntTSL 2 BASIC5.49□□□□□ -1.53
DKK3Q9UBP4 USP8-201ENST00000307179 4243 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
DKK3Q9UBP4 MYBPC1-207ENST00000545503 3569 ntAPPRIS ALT2 TSL 1 (best) BASIC5.49□□□□□ -1.53
DKK3Q9UBP4 OR6C4-203ENST00000641851 4989 ntAPPRIS P1 BASIC5.49□□□□□ -1.53
DKK3Q9UBP4 XIST-204ENST00000429829 19275 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
DKK3Q9UBP4 NBPF10-202ENST00000617010 11630 ntTSL 5 BASIC5.49□□□□□ -1.53
DKK3Q9UBP4 EDA2R-202ENST00000374719 3418 ntAPPRIS P3 TSL 1 (best) BASIC5.49□□□□□ -1.53
DKK3Q9UBP4 TET2-203ENST00000380013 9679 ntAPPRIS P2 TSL 5 BASIC5.49□□□□□ -1.53
DKK3Q9UBP4 MIR133B-201ENST00000362210 119 ntBASIC5.49□□□□□ -1.53
DKK3Q9UBP4 MIR1286-201ENST00000408112 78 ntBASIC5.49□□□□□ -1.53
DKK3Q9UBP4 AC092652.1-202ENST00000413315 587 ntTSL 4 BASIC5.49□□□□□ -1.53
DKK3Q9UBP4 RPSAP35-201ENST00000413753 818 ntBASIC5.49□□□□□ -1.53
DKK3Q9UBP4 AC093158.1-201ENST00000415549 791 ntTSL 3 BASIC5.49□□□□□ -1.53
DKK3Q9UBP4 AC092155.1-202ENST00000416111 932 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
DKK3Q9UBP4 TMEM196-203ENST00000422233 775 ntTSL 5 BASIC5.49□□□□□ -1.53
DKK3Q9UBP4 AC005189.1-201ENST00000431286 310 ntBASIC5.49□□□□□ -1.53
DKK3Q9UBP4 MTND2P40-201ENST00000436718 841 ntBASIC5.49□□□□□ -1.53
DKK3Q9UBP4 OR5H14-201ENST00000437310 1080 ntAPPRIS P1 BASIC5.49□□□□□ -1.53
DKK3Q9UBP4 CDY12P-201ENST00000440679 1015 ntBASIC5.49□□□□□ -1.53
DKK3Q9UBP4 CDY13P-201ENST00000445813 1015 ntBASIC5.49□□□□□ -1.53
DKK3Q9UBP4 TMSB4X-204ENST00000451311 628 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
DKK3Q9UBP4 AL137005.1-201ENST00000452944 719 ntTSL 5 BASIC5.49□□□□□ -1.53
DKK3Q9UBP4 RPS6P2-201ENST00000454208 705 ntBASIC5.49□□□□□ -1.53
DKK3Q9UBP4 GTF2IP12-201ENST00000456547 356 ntBASIC5.49□□□□□ -1.53
DKK3Q9UBP4 TPTE2P5-203ENST00000458118 728 ntBASIC5.49□□□□□ -1.53
DKK3Q9UBP4 NECTIN3-AS1-202ENST00000467426 664 ntTSL 3 BASIC5.49□□□□□ -1.53
DKK3Q9UBP4 MTND2P14-201ENST00000482139 351 ntBASIC5.49□□□□□ -1.53
DKK3Q9UBP4 AC011037.1-201ENST00000483964 558 ntBASIC5.49□□□□□ -1.53
DKK3Q9UBP4 AC112206.2-204ENST00000504068 793 ntTSL 3 BASIC5.49□□□□□ -1.53
DKK3Q9UBP4 LINC02383-201ENST00000508563 582 ntTSL 3 BASIC5.49□□□□□ -1.53
DKK3Q9UBP4 AC097535.1-201ENST00000515263 332 ntTSL 3 BASIC5.49□□□□□ -1.53
DKK3Q9UBP4 SNORA3.4-201ENST00000515969 96 ntBASIC5.49□□□□□ -1.53
DKK3Q9UBP4 RN7SKP141-201ENST00000516167 338 ntBASIC5.49□□□□□ -1.53
DKK3Q9UBP4 AC027419.2-201ENST00000518439 497 ntTSL 3 BASIC5.49□□□□□ -1.53
DKK3Q9UBP4 AP001205.1-201ENST00000521625 449 ntTSL 3 BASIC5.49□□□□□ -1.53
DKK3Q9UBP4 AC126177.5-201ENST00000549599 178 ntBASIC5.49□□□□□ -1.53
DKK3Q9UBP4 AC133065.1-201ENST00000572017 575 ntTSL 3 BASIC5.49□□□□□ -1.53
DKK3Q9UBP4 ZNF230-204ENST00000585632 579 ntTSL 2 BASIC5.49□□□□□ -1.53
DKK3Q9UBP4 AC010127.1-205ENST00000595268 567 ntTSL 5 BASIC5.49□□□□□ -1.53
DKK3Q9UBP4 AC009237.13-201ENST00000603193 276 ntBASIC5.49□□□□□ -1.53
DKK3Q9UBP4 AC025175.1-201ENST00000606482 759 ntBASIC5.49□□□□□ -1.53
DKK3Q9UBP4 LINC02340-201ENST00000610335 626 ntTSL 3 BASIC5.49□□□□□ -1.53
DKK3Q9UBP4 AC092106.3-201ENST00000611308 722 ntBASIC5.49□□□□□ -1.53
DKK3Q9UBP4 AC092159.4-201ENST00000624944 550 ntBASIC5.49□□□□□ -1.53
DKK3Q9UBP4 UGP2-231ENST00000627474 264 ntTSL 5 BASIC5.49□□□□□ -1.53
DKK3Q9UBP4 SATB1-AS1-259ENST00000629477 853 ntTSL 5 BASIC5.49□□□□□ -1.53
DKK3Q9UBP4 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
DKK3Q9UBP4 DAOA-212ENST00000640578 378 ntAPPRIS ALT2 TSL 5 BASIC5.49□□□□□ -1.53
DKK3Q9UBP4 SAMMSON-227ENST00000642114 1199 ntBASIC5.49□□□□□ -1.53
DKK3Q9UBP4 OR52E5-201ENST00000610445 2244 ntAPPRIS P1 BASIC5.49□□□□□ -1.53
DKK3Q9UBP4 CTAGE5-219ENST00000640607 4239 ntAPPRIS P5 TSL 1 (best) BASIC5.49□□□□□ -1.53
DKK3Q9UBP4 NXF4-202ENST00000416098 1465 ntBASIC5.49□□□□□ -1.53
DKK3Q9UBP4 TOPBP1-201ENST00000260810 5378 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
DKK3Q9UBP4 LCMT1-AS2-202ENST00000565214 5666 ntBASIC5.49□□□□□ -1.53
DKK3Q9UBP4 PCGF5-201ENST00000336126 7018 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 107.9 ms