Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 CEP290-207ENST00000552810 7948 ntAPPRIS P2 TSL 1 (best) BASIC5.65□□□□□ -1.51
SHANK3Q9BYB0 RNA5SP513-201ENST00000364648 118 ntBASIC5.65□□□□□ -1.51
SHANK3Q9BYB0 C9orf153-202ENST00000376001 409 ntAPPRIS ALT2 TSL 3 BASIC5.65□□□□□ -1.51
SHANK3Q9BYB0 SNORA5.1-201ENST00000384275 131 ntBASIC5.65□□□□□ -1.51
SHANK3Q9BYB0 RPL6P29-201ENST00000414863 865 ntBASIC5.65□□□□□ -1.51
SHANK3Q9BYB0 AC104978.1-201ENST00000449387 391 ntBASIC5.65□□□□□ -1.51
SHANK3Q9BYB0 AC007967.1-201ENST00000455422 1159 ntBASIC5.65□□□□□ -1.51
SHANK3Q9BYB0 ACTR3BP4-201ENST00000503033 1244 ntBASIC5.65□□□□□ -1.51
SHANK3Q9BYB0 WWC2-AS1-201ENST00000511846 404 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
SHANK3Q9BYB0 AC024224.1-201ENST00000538284 609 ntBASIC5.65□□□□□ -1.51
SHANK3Q9BYB0 CRNDE-213ENST00000635991 546 ntTSL 5 BASIC5.65□□□□□ -1.51
SHANK3Q9BYB0 COA1-220ENST00000640232 192 ntAPPRIS ALT2 TSL 3 BASIC5.65□□□□□ -1.51
SHANK3Q9BYB0 ZNF518B-201ENST00000326756 6894 ntAPPRIS P1 TSL 3 BASIC5.65□□□□□ -1.51
SHANK3Q9BYB0 ZNF284-201ENST00000421176 4351 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
SHANK3Q9BYB0 MMRN1-202ENST00000394980 5217 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.51
SHANK3Q9BYB0 SLC30A6-201ENST00000282587 5089 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
SHANK3Q9BYB0 NBPF14-206ENST00000614999 10080 ntTSL 5 BASIC5.64□□□□□ -1.51
SHANK3Q9BYB0 ARHGAP42P1-201ENST00000507474 1976 ntBASIC5.64□□□□□ -1.51
SHANK3Q9BYB0 PLCXD3-201ENST00000328457 7538 ntAPPRIS P1 TSL 5 BASIC5.64□□□□□ -1.51
SHANK3Q9BYB0 AC079915.1-201ENST00000584382 2780 ntTSL 2 BASIC5.64□□□□□ -1.51
SHANK3Q9BYB0 RALGAPA2-201ENST00000202677 6152 ntAPPRIS P1 TSL 5 BASIC5.64□□□□□ -1.51
SHANK3Q9BYB0 AL359922.3-201ENST00000624779 1670 ntBASIC5.64□□□□□ -1.51
SHANK3Q9BYB0 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC5.64□□□□□ -1.51
SHANK3Q9BYB0 NAP1L1-227ENST00000618691 13505 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
SHANK3Q9BYB0 LINC02432-202ENST00000509161 2839 ntTSL 2 BASIC5.64□□□□□ -1.51
SHANK3Q9BYB0 RUFY2-201ENST00000265865 2033 ntTSL 2 BASIC5.64□□□□□ -1.51
SHANK3Q9BYB0 PDC-201ENST00000391997 1242 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
SHANK3Q9BYB0 HIST1H2APS3-201ENST00000403259 134 ntBASIC5.64□□□□□ -1.51
SHANK3Q9BYB0 AC018742.1-201ENST00000435237 488 ntTSL 3 BASIC5.64□□□□□ -1.51
SHANK3Q9BYB0 AC084149.1-201ENST00000437233 284 ntTSL 5 BASIC5.64□□□□□ -1.51
SHANK3Q9BYB0 SERPINA7P1-201ENST00000443077 631 ntBASIC5.64□□□□□ -1.51
SHANK3Q9BYB0 AL592156.1-201ENST00000508758 304 ntBASIC5.64□□□□□ -1.51
SHANK3Q9BYB0 RPL23AP94-201ENST00000512518 302 ntBASIC5.64□□□□□ -1.51
SHANK3Q9BYB0 RNU1-103P-201ENST00000516502 125 ntBASIC5.64□□□□□ -1.51
SHANK3Q9BYB0 RNA5SP360-201ENST00000516555 118 ntBASIC5.64□□□□□ -1.51
SHANK3Q9BYB0 RERGL-203ENST00000538724 973 ntAPPRIS P1 TSL 2 BASIC5.64□□□□□ -1.51
SHANK3Q9BYB0 AC024909.1-201ENST00000549278 599 ntTSL 4 BASIC5.64□□□□□ -1.51
SHANK3Q9BYB0 AL359237.1-202ENST00000556168 487 ntTSL 5 BASIC5.64□□□□□ -1.51
SHANK3Q9BYB0 LINC01470-205ENST00000584829 681 ntTSL 3 BASIC5.64□□□□□ -1.51
SHANK3Q9BYB0 AL451086.1-201ENST00000605596 223 ntBASIC5.64□□□□□ -1.51
SHANK3Q9BYB0 AC019176.2-201ENST00000611579 315 ntBASIC5.64□□□□□ -1.51
SHANK3Q9BYB0 TMEM30CP-203ENST00000637814 1035 ntBASIC5.64□□□□□ -1.51
SHANK3Q9BYB0 RORA-203ENST00000335670 10844 ntAPPRIS P3 TSL 1 (best) BASIC5.64□□□□□ -1.51
SHANK3Q9BYB0 OSGEPL1-201ENST00000264151 1885 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
SHANK3Q9BYB0 MPHOSPH9-211ENST00000541076 6136 ntAPPRIS ALT2 TSL 5 BASIC5.64□□□□□ -1.51
SHANK3Q9BYB0 DGKB-203ENST00000403951 6917 ntAPPRIS P2 TSL 5 BASIC5.64□□□□□ -1.51
SHANK3Q9BYB0 OR52A5-201ENST00000307388 3973 ntAPPRIS P1 BASIC5.64□□□□□ -1.51
SHANK3Q9BYB0 RLIMP1-201ENST00000339626 1680 ntBASIC5.64□□□□□ -1.51
SHANK3Q9BYB0 ZNF493-202ENST00000355504 4386 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
SHANK3Q9BYB0 SSR1-202ENST00000397511 3248 ntTSL 5 BASIC5.64□□□□□ -1.51
SHANK3Q9BYB0 CSMD2-206ENST00000373388 13118 ntAPPRIS P3 TSL 1 (best) BASIC5.64□□□□□ -1.51
SHANK3Q9BYB0 AFM-201ENST00000226355 2059 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
SHANK3Q9BYB0 C4orf17-204ENST00000514652 2542 ntAPPRIS ALT2 TSL 5 BASIC5.64□□□□□ -1.51
SHANK3Q9BYB0 PCDH15-212ENST00000395442 2970 ntTSL 5 BASIC5.64□□□□□ -1.51
SHANK3Q9BYB0 FRMD6-205ENST00000554167 4176 ntTSL 2 BASIC5.63□□□□□ -1.51
SHANK3Q9BYB0 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
SHANK3Q9BYB0 EMCN-201ENST00000296420 4037 ntAPPRIS P3 TSL 1 (best) BASIC5.63□□□□□ -1.51
SHANK3Q9BYB0 LINC01524-201ENST00000428009 4390 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
SHANK3Q9BYB0 AL603750.1-201ENST00000624216 1717 ntBASIC5.63□□□□□ -1.51
SHANK3Q9BYB0 SNORA73.2-201ENST00000364946 201 ntBASIC5.63□□□□□ -1.51
SHANK3Q9BYB0 LINC00458-202ENST00000427299 1030 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
SHANK3Q9BYB0 DDX39BP2-208ENST00000453923 258 ntBASIC5.63□□□□□ -1.51
SHANK3Q9BYB0 AC098799.1-201ENST00000504752 800 ntBASIC5.63□□□□□ -1.51
SHANK3Q9BYB0 LINC01957-201ENST00000506392 751 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
SHANK3Q9BYB0 IGLVVI-25-1-201ENST00000521893 249 ntBASIC5.63□□□□□ -1.51
SHANK3Q9BYB0 AC007991.1-201ENST00000522680 631 ntBASIC5.63□□□□□ -1.51
SHANK3Q9BYB0 RN7SL371P-201ENST00000578099 267 ntBASIC5.63□□□□□ -1.51
SHANK3Q9BYB0 Z98200.1-201ENST00000607298 470 ntBASIC5.63□□□□□ -1.51
SHANK3Q9BYB0 AC244196.2-201ENST00000621184 411 ntAPPRIS P1 BASIC5.63□□□□□ -1.51
SHANK3Q9BYB0 AKAP4-201ENST00000358526 2881 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
SHANK3Q9BYB0 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC5.63□□□□□ -1.51
SHANK3Q9BYB0 AL591135.1-201ENST00000401578 5914 ntBASIC5.63□□□□□ -1.51
SHANK3Q9BYB0 CTNND1-212ENST00000525902 4984 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
SHANK3Q9BYB0 NSD3-206ENST00000527502 4471 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
SHANK3Q9BYB0 SEC31A-201ENST00000264405 3447 ntTSL 2 BASIC5.63□□□□□ -1.51
SHANK3Q9BYB0 CHST12-201ENST00000258711 15979 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
SHANK3Q9BYB0 PARD3B-214ENST00000622699 7442 ntTSL 5 BASIC5.63□□□□□ -1.51
SHANK3Q9BYB0 TEK-205ENST00000615002 4666 ntTSL 5 BASIC5.63□□□□□ -1.51
SHANK3Q9BYB0 RNF19A-205ENST00000519449 4330 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
SHANK3Q9BYB0 AL929601.4-201ENST00000613011 1341 ntBASIC5.63□□□□□ -1.51
SHANK3Q9BYB0 WDR12-201ENST00000261015 8100 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
SHANK3Q9BYB0 EIF2AK3-203ENST00000419748 4222 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
SHANK3Q9BYB0 FRK-201ENST00000606080 13230 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
SHANK3Q9BYB0 RNU6-1279P-201ENST00000383917 103 ntBASIC5.62□□□□□ -1.51
SHANK3Q9BYB0 PTMAP5-201ENST00000393073 333 ntBASIC5.62□□□□□ -1.51
SHANK3Q9BYB0 AL672167.1-201ENST00000441381 464 ntTSL 3 BASIC5.62□□□□□ -1.51
SHANK3Q9BYB0 PTMAP3-201ENST00000447474 330 ntBASIC5.62□□□□□ -1.51
SHANK3Q9BYB0 AL157400.3-201ENST00000449882 1298 ntTSL 5 BASIC5.62□□□□□ -1.51
SHANK3Q9BYB0 AC004692.2-202ENST00000458680 478 ntTSL 3 BASIC5.62□□□□□ -1.51
SHANK3Q9BYB0 RPS20P4-201ENST00000461659 355 ntBASIC5.62□□□□□ -1.51
SHANK3Q9BYB0 AC097103.1-201ENST00000512398 273 ntTSL 3 BASIC5.62□□□□□ -1.51
SHANK3Q9BYB0 RN7SKP13-201ENST00000515933 244 ntBASIC5.62□□□□□ -1.51
SHANK3Q9BYB0 SLC14A2-AS1-203ENST00000592286 528 ntTSL 4 BASIC5.62□□□□□ -1.51
SHANK3Q9BYB0 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC5.62□□□□□ -1.51
SHANK3Q9BYB0 AL159169.3-201ENST00000608871 561 ntBASIC5.62□□□□□ -1.51
SHANK3Q9BYB0 NRDE2-210ENST00000628832 132 ntTSL 5 BASIC5.62□□□□□ -1.51
SHANK3Q9BYB0 ZNF345-216ENST00000640438 963 ntTSL 5 BASIC5.62□□□□□ -1.51
SHANK3Q9BYB0 SGIP1-204ENST00000371039 4080 ntAPPRIS ALT2 TSL 1 (best) BASIC5.62□□□□□ -1.51
SHANK3Q9BYB0 AL136164.3-201ENST00000624429 3978 ntBASIC5.62□□□□□ -1.51
SHANK3Q9BYB0 TLR8-201ENST00000218032 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC5.62□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 104.7 ms