Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 HMGB1P13-201ENST00000406019 642 ntBASIC4.44□□□□□ -1.7
PDLIM3Q53GG5 RNA5SP487-201ENST00000410186 122 ntBASIC4.44□□□□□ -1.7
PDLIM3Q53GG5 AL024507.1-201ENST00000412741 274 ntBASIC4.44□□□□□ -1.7
PDLIM3Q53GG5 COX5BP7-201ENST00000414780 274 ntBASIC4.44□□□□□ -1.7
PDLIM3Q53GG5 AC008173.1-201ENST00000418901 264 ntBASIC4.44□□□□□ -1.7
PDLIM3Q53GG5 PNRC2P1-201ENST00000423940 420 ntBASIC4.44□□□□□ -1.7
PDLIM3Q53GG5 AC012519.1-201ENST00000424588 610 ntBASIC4.44□□□□□ -1.7
PDLIM3Q53GG5 GNGT1-202ENST00000428834 731 ntTSL 3 BASIC4.44□□□□□ -1.7
PDLIM3Q53GG5 AF230666.1-201ENST00000429151 786 ntTSL 2 BASIC4.44□□□□□ -1.7
PDLIM3Q53GG5 AL035458.1-201ENST00000433096 585 ntBASIC4.44□□□□□ -1.7
PDLIM3Q53GG5 C2CD6-202ENST00000439140 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC4.44□□□□□ -1.7
PDLIM3Q53GG5 Z93403.1-202ENST00000440002 713 ntTSL 3 BASIC4.44□□□□□ -1.7
PDLIM3Q53GG5 AC073648.4-201ENST00000442655 781 ntBASIC4.44□□□□□ -1.7
PDLIM3Q53GG5 AC092647.3-201ENST00000443044 633 ntBASIC4.44□□□□□ -1.7
PDLIM3Q53GG5 AL355601.1-201ENST00000444701 427 ntTSL 3 BASIC4.44□□□□□ -1.7
PDLIM3Q53GG5 AC068489.1-201ENST00000453706 261 ntTSL 5 BASIC4.44□□□□□ -1.7
PDLIM3Q53GG5 MTATP6P14-201ENST00000455189 673 ntBASIC4.44□□□□□ -1.7
PDLIM3Q53GG5 RPS20P4-201ENST00000461659 355 ntBASIC4.44□□□□□ -1.7
PDLIM3Q53GG5 AC008379.1-201ENST00000463655 464 ntBASIC4.44□□□□□ -1.7
PDLIM3Q53GG5 RPS23P6-201ENST00000466136 431 ntBASIC4.44□□□□□ -1.7
PDLIM3Q53GG5 FAM104B-204ENST00000472571 1109 ntAPPRIS ALT2 TSL 1 (best) BASIC4.44□□□□□ -1.7
PDLIM3Q53GG5 GIMAP2-202ENST00000474605 309 ntTSL 3 BASIC4.44□□□□□ -1.7
PDLIM3Q53GG5 CREM-230ENST00000474931 626 ntTSL 2 BASIC4.44□□□□□ -1.7
PDLIM3Q53GG5 SLC9A9-AS1-201ENST00000479030 518 ntTSL 5 BASIC4.44□□□□□ -1.7
PDLIM3Q53GG5 SETP6-201ENST00000479329 568 ntBASIC4.44□□□□□ -1.7
PDLIM3Q53GG5 RPL32P33-201ENST00000487023 394 ntBASIC4.44□□□□□ -1.7
PDLIM3Q53GG5 RN7SL604P-201ENST00000492589 296 ntBASIC4.44□□□□□ -1.7
PDLIM3Q53GG5 AC068672.3-203ENST00000505166 311 ntTSL 3 BASIC4.44□□□□□ -1.7
PDLIM3Q53GG5 IGBP1P5-201ENST00000507524 1000 ntBASIC4.44□□□□□ -1.7
PDLIM3Q53GG5 SPRY4-AS1-205ENST00000514303 152 ntTSL 3 BASIC4.44□□□□□ -1.7
PDLIM3Q53GG5 AF186190.1-201ENST00000517470 480 ntBASIC4.44□□□□□ -1.7
PDLIM3Q53GG5 SDCBP-207ENST00000520168 1097 ntTSL 2 BASIC4.44□□□□□ -1.7
PDLIM3Q53GG5 AC087664.1-201ENST00000521456 358 ntTSL 3 BASIC4.44□□□□□ -1.7
PDLIM3Q53GG5 TMEM191C-213ENST00000545656 574 ntAPPRIS ALT2 BASIC4.44□□□□□ -1.7
PDLIM3Q53GG5 AL445363.1-202ENST00000553697 545 ntTSL 3 BASIC4.44□□□□□ -1.7
PDLIM3Q53GG5 AC104229.1-201ENST00000561364 255 ntBASIC4.44□□□□□ -1.7
PDLIM3Q53GG5 AC018557.2-201ENST00000565082 536 ntTSL 5 BASIC4.44□□□□□ -1.7
PDLIM3Q53GG5 ATP5J2P6-201ENST00000565203 266 ntBASIC4.44□□□□□ -1.7
PDLIM3Q53GG5 AC090403.1-204ENST00000582893 572 ntTSL 4 BASIC4.44□□□□□ -1.7
PDLIM3Q53GG5 BNIP3P40-201ENST00000596017 556 ntBASIC4.44□□□□□ -1.7
PDLIM3Q53GG5 SATB1-AS1-222ENST00000600177 751 ntTSL 5 BASIC4.44□□□□□ -1.7
PDLIM3Q53GG5 AC090525.3-201ENST00000605601 189 ntBASIC4.44□□□□□ -1.7
PDLIM3Q53GG5 AL121652.1-201ENST00000608851 448 ntBASIC4.44□□□□□ -1.7
PDLIM3Q53GG5 PRKCQ-AS1-213ENST00000613985 883 ntTSL 5 BASIC4.44□□□□□ -1.7
PDLIM3Q53GG5 AC005858.1-201ENST00000620193 677 ntTSL 2 BASIC4.44□□□□□ -1.7
PDLIM3Q53GG5 AC012414.7-202ENST00000622705 1090 ntBASIC4.44□□□□□ -1.7
PDLIM3Q53GG5 PRKCQ-AS1-218ENST00000624974 1132 ntTSL 5 BASIC4.44□□□□□ -1.7
PDLIM3Q53GG5 AJ009632.2-203ENST00000634708 1205 ntTSL 5 BASIC4.44□□□□□ -1.7
PDLIM3Q53GG5 AL445984.1-201ENST00000637834 659 ntBASIC4.44□□□□□ -1.7
PDLIM3Q53GG5 METTL8-218ENST00000638989 876 ntTSL 5 BASIC4.44□□□□□ -1.7
PDLIM3Q53GG5 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC4.44□□□□□ -1.7
PDLIM3Q53GG5 GALNT11-203ENST00000422997 2371 ntTSL 5 BASIC4.44□□□□□ -1.7
PDLIM3Q53GG5 RWDD2A-201ENST00000369724 3744 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
PDLIM3Q53GG5 ABI3BP-215ENST00000495063 3714 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
PDLIM3Q53GG5 NLRC4-203ENST00000402280 3355 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
PDLIM3Q53GG5 LINC01923-203ENST00000456248 2528 ntTSL 2 BASIC4.44□□□□□ -1.7
PDLIM3Q53GG5 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC4.44□□□□□ -1.7
PDLIM3Q53GG5 DOCK7-211ENST00000634264 6303 ntAPPRIS ALT2 TSL 5 BASIC4.44□□□□□ -1.7
PDLIM3Q53GG5 TRIQK-206ENST00000518748 3563 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
PDLIM3Q53GG5 LINC02085-201ENST00000465215 2051 ntTSL 2 BASIC4.44□□□□□ -1.7
PDLIM3Q53GG5 ATP7A-202ENST00000343533 8289 ntTSL 5 BASIC4.44□□□□□ -1.7
PDLIM3Q53GG5 UTS2B-201ENST00000340524 2395 ntAPPRIS P1 TSL 2 BASIC4.43□□□□□ -1.7
PDLIM3Q53GG5 KIAA0586-202ENST00000354386 5226 ntAPPRIS ALT2 TSL 2 BASIC4.43□□□□□ -1.7
PDLIM3Q53GG5 CCSER2-210ENST00000543283 5888 ntTSL 2 BASIC4.43□□□□□ -1.7
PDLIM3Q53GG5 RAPH1-207ENST00000423104 1860 ntAPPRIS ALT2 TSL 5 BASIC4.43□□□□□ -1.7
PDLIM3Q53GG5 RAPH1-209ENST00000439222 1854 ntAPPRIS ALT2 TSL 5 BASIC4.43□□□□□ -1.7
PDLIM3Q53GG5 ERMN-201ENST00000397283 3760 ntTSL 2 BASIC4.43□□□□□ -1.7
PDLIM3Q53GG5 ZNF418-205ENST00000595830 3543 ntAPPRIS P3 TSL 1 (best) BASIC4.43□□□□□ -1.7
PDLIM3Q53GG5 CASC19-204ENST00000641001 2055 ntBASIC4.43□□□□□ -1.7
PDLIM3Q53GG5 RNU6-666P-201ENST00000363499 107 ntBASIC4.43□□□□□ -1.7
PDLIM3Q53GG5 TEX35-202ENST00000367639 785 ntAPPRIS ALT2 TSL 1 (best) BASIC4.43□□□□□ -1.7
PDLIM3Q53GG5 LINC00474-201ENST00000374014 769 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
PDLIM3Q53GG5 RNU6-354P-201ENST00000383862 107 ntBASIC4.43□□□□□ -1.7
PDLIM3Q53GG5 RNU6-610P-201ENST00000384264 107 ntBASIC4.43□□□□□ -1.7
PDLIM3Q53GG5 RNU6-452P-201ENST00000384406 107 ntBASIC4.43□□□□□ -1.7
PDLIM3Q53GG5 SNX10-204ENST00000409838 944 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
PDLIM3Q53GG5 LSM5-205ENST00000409952 687 ntTSL 4 BASIC4.43□□□□□ -1.7
PDLIM3Q53GG5 RMRPP5-201ENST00000411156 267 ntBASIC4.43□□□□□ -1.7
PDLIM3Q53GG5 ZNRF3-IT1-201ENST00000412798 674 ntTSL 5 BASIC4.43□□□□□ -1.7
PDLIM3Q53GG5 RPS6P23-201ENST00000413224 722 ntBASIC4.43□□□□□ -1.7
PDLIM3Q53GG5 PCNPP4-201ENST00000414817 517 ntBASIC4.43□□□□□ -1.7
PDLIM3Q53GG5 AC099654.1-202ENST00000415836 564 ntTSL 4 BASIC4.43□□□□□ -1.7
PDLIM3Q53GG5 AL391704.2-201ENST00000418379 981 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
PDLIM3Q53GG5 RPL12P34-201ENST00000424532 479 ntBASIC4.43□□□□□ -1.7
PDLIM3Q53GG5 LINC01731-201ENST00000428035 420 ntTSL 3 BASIC4.43□□□□□ -1.7
PDLIM3Q53GG5 AC005189.1-201ENST00000431286 310 ntBASIC4.43□□□□□ -1.7
PDLIM3Q53GG5 HMGB3P24-201ENST00000433260 622 ntBASIC4.43□□□□□ -1.7
PDLIM3Q53GG5 LINC00484-204ENST00000439438 454 ntTSL 3 BASIC4.43□□□□□ -1.7
PDLIM3Q53GG5 AF064858.2-201ENST00000440714 292 ntTSL 3 BASIC4.43□□□□□ -1.7
PDLIM3Q53GG5 LARS2-AS1-201ENST00000442534 575 ntTSL 4 BASIC4.43□□□□□ -1.7
PDLIM3Q53GG5 TCEA1P3-201ENST00000443005 880 ntBASIC4.43□□□□□ -1.7
PDLIM3Q53GG5 AC092106.1-201ENST00000444291 373 ntBASIC4.43□□□□□ -1.7
PDLIM3Q53GG5 AC005297.1-201ENST00000444765 862 ntBASIC4.43□□□□□ -1.7
PDLIM3Q53GG5 LINC01309-201ENST00000444795 492 ntTSL 3 BASIC4.43□□□□□ -1.7
PDLIM3Q53GG5 RPL6P5-201ENST00000445678 828 ntBASIC4.43□□□□□ -1.7
PDLIM3Q53GG5 CEP70-205ENST00000464035 1054 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
PDLIM3Q53GG5 RPS18P6-201ENST00000476880 458 ntBASIC4.43□□□□□ -1.7
PDLIM3Q53GG5 LINC02040-201ENST00000481004 556 ntTSL 5 BASIC4.43□□□□□ -1.7
PDLIM3Q53GG5 AC022215.1-201ENST00000481770 362 ntBASIC4.43□□□□□ -1.7
PDLIM3Q53GG5 RPL21P47-201ENST00000483696 477 ntBASIC4.43□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 131.6 ms