Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 PPEF1-202ENST00000361511 2890 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
USP41Q3LFD5 LINC02227-201ENST00000619068 3748 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
USP41Q3LFD5 OR4K17-201ENST00000315543 1032 ntBASIC5.25□□□□□ -1.57
USP41Q3LFD5 MIR16-2-201ENST00000362117 81 ntBASIC5.25□□□□□ -1.57
USP41Q3LFD5 RNU1-32P-201ENST00000363937 159 ntBASIC5.25□□□□□ -1.57
USP41Q3LFD5 LINC00474-201ENST00000374014 769 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
USP41Q3LFD5 RNU6-1320P-201ENST00000390838 107 ntBASIC5.25□□□□□ -1.57
USP41Q3LFD5 RNU6-1269P-201ENST00000391139 107 ntBASIC5.25□□□□□ -1.57
USP41Q3LFD5 BX510359.2-201ENST00000417920 305 ntBASIC5.25□□□□□ -1.57
USP41Q3LFD5 AL359265.2-201ENST00000434367 631 ntBASIC5.25□□□□□ -1.57
USP41Q3LFD5 HMGB3P10-201ENST00000434734 572 ntBASIC5.25□□□□□ -1.57
USP41Q3LFD5 AL157387.1-201ENST00000436077 335 ntTSL 2 BASIC5.25□□□□□ -1.57
USP41Q3LFD5 AL445644.1-201ENST00000436524 751 ntTSL 2 BASIC5.25□□□□□ -1.57
USP41Q3LFD5 LMO7DN-IT1-201ENST00000436872 321 ntTSL 3 BASIC5.25□□□□□ -1.57
USP41Q3LFD5 AL450023.3-201ENST00000440592 271 ntBASIC5.25□□□□□ -1.57
USP41Q3LFD5 RNFT1P2-201ENST00000443064 757 ntBASIC5.25□□□□□ -1.57
USP41Q3LFD5 RPL36AP15-201ENST00000444514 266 ntBASIC5.25□□□□□ -1.57
USP41Q3LFD5 HMGN1P5-201ENST00000448591 263 ntBASIC5.25□□□□□ -1.57
USP41Q3LFD5 Z99127.1-202ENST00000448686 526 ntTSL 2 BASIC5.25□□□□□ -1.57
USP41Q3LFD5 C2orf80-206ENST00000451346 979 ntTSL 5 BASIC5.25□□□□□ -1.57
USP41Q3LFD5 AC017101.1-201ENST00000453665 571 ntTSL 4 BASIC5.25□□□□□ -1.57
USP41Q3LFD5 PTCHD1-AS-201ENST00000455399 718 ntTSL 3 BASIC5.25□□□□□ -1.57
USP41Q3LFD5 RNU6-599P-201ENST00000459383 107 ntBASIC5.25□□□□□ -1.57
USP41Q3LFD5 RNU6-1193P-201ENST00000459461 107 ntBASIC5.25□□□□□ -1.57
USP41Q3LFD5 C10orf128-207ENST00000474718 614 ntAPPRIS P3 TSL 1 (best) BASIC5.25□□□□□ -1.57
USP41Q3LFD5 RPL5P22-201ENST00000480199 884 ntBASIC5.25□□□□□ -1.57
USP41Q3LFD5 AC092691.3-201ENST00000482766 510 ntTSL 3 BASIC5.25□□□□□ -1.57
USP41Q3LFD5 PLSCR5-203ENST00000492200 1058 ntAPPRIS P1 TSL 5 BASIC5.25□□□□□ -1.57
USP41Q3LFD5 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC5.25□□□□□ -1.57
USP41Q3LFD5 LINC01339-201ENST00000505712 440 ntTSL 2 BASIC5.25□□□□□ -1.57
USP41Q3LFD5 HHIP-AS1-203ENST00000512359 646 ntTSL 3 BASIC5.25□□□□□ -1.57
USP41Q3LFD5 ENPP7P9-201ENST00000514456 627 ntBASIC5.25□□□□□ -1.57
USP41Q3LFD5 HAUS1P3-201ENST00000523909 662 ntBASIC5.25□□□□□ -1.57
USP41Q3LFD5 AC090809.1-201ENST00000524132 570 ntTSL 4 BASIC5.25□□□□□ -1.57
USP41Q3LFD5 MIR670HG-201ENST00000533531 897 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
USP41Q3LFD5 AC145207.6-201ENST00000579981 782 ntTSL 5 BASIC5.25□□□□□ -1.57
USP41Q3LFD5 AC011473.1-201ENST00000601280 443 ntTSL 2 BASIC5.25□□□□□ -1.57
USP41Q3LFD5 LINC00397-202ENST00000606785 409 ntTSL 5 BASIC5.25□□□□□ -1.57
USP41Q3LFD5 AL451049.1-201ENST00000608672 497 ntBASIC5.25□□□□□ -1.57
USP41Q3LFD5 AC110792.4-201ENST00000609843 298 ntBASIC5.25□□□□□ -1.57
USP41Q3LFD5 MIR8084-201ENST00000614105 89 ntBASIC5.25□□□□□ -1.57
USP41Q3LFD5 AL049794.2-201ENST00000616301 365 ntBASIC5.25□□□□□ -1.57
USP41Q3LFD5 AC018926.1-201ENST00000616335 435 ntBASIC5.25□□□□□ -1.57
USP41Q3LFD5 AC016957.2-201ENST00000616998 848 ntBASIC5.25□□□□□ -1.57
USP41Q3LFD5 RNU6-368P-201ENST00000620928 107 ntBASIC5.25□□□□□ -1.57
USP41Q3LFD5 RNU6-538P-201ENST00000622329 107 ntBASIC5.25□□□□□ -1.57
USP41Q3LFD5 OR8B2-202ENST00000641451 1056 ntAPPRIS P1 BASIC5.25□□□□□ -1.57
USP41Q3LFD5 TTC3-204ENST00000399017 10363 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
USP41Q3LFD5 TENM1-202ENST00000422452 12891 ntAPPRIS ALT1 TSL 1 (best) BASIC5.25□□□□□ -1.57
USP41Q3LFD5 ECM2-202ENST00000375540 1606 ntTSL 2 BASIC5.25□□□□□ -1.57
USP41Q3LFD5 LINC00550-201ENST00000629293 3434 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
USP41Q3LFD5 LINC02085-201ENST00000465215 2051 ntTSL 2 BASIC5.25□□□□□ -1.57
USP41Q3LFD5 LINC01520-201ENST00000441457 1487 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
USP41Q3LFD5 FYB1-201ENST00000351578 4750 ntAPPRIS P3 TSL 1 (best) BASIC5.25□□□□□ -1.57
USP41Q3LFD5 ASTE1-208ENST00000514044 2504 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
USP41Q3LFD5 SLCO1C1-208ENST00000545102 2868 ntTSL 2 BASIC5.25□□□□□ -1.57
USP41Q3LFD5 ATP13A4-203ENST00000392443 4016 ntTSL 5 BASIC5.25□□□□□ -1.57
USP41Q3LFD5 AC019072.1-201ENST00000604535 1551 ntBASIC5.25□□□□□ -1.57
USP41Q3LFD5 RABL3-201ENST00000273375 3883 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
USP41Q3LFD5 LINC00919-201ENST00000561513 1658 ntTSL 2 BASIC5.24□□□□□ -1.57
USP41Q3LFD5 MTND4P9-201ENST00000507819 1346 ntBASIC5.24□□□□□ -1.57
USP41Q3LFD5 SPART-202ENST00000438666 4789 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
USP41Q3LFD5 OR2AT4-203ENST00000641541 8795 ntAPPRIS P1 BASIC5.24□□□□□ -1.57
USP41Q3LFD5 NUDT12-202ENST00000507423 1781 ntTSL 2 BASIC5.24□□□□□ -1.57
USP41Q3LFD5 ATPAF1-212ENST00000542495 1779 ntTSL 2 BASIC5.24□□□□□ -1.57
USP41Q3LFD5 FAM184A-204ENST00000368475 3392 ntTSL 2 BASIC5.24□□□□□ -1.57
USP41Q3LFD5 LIMA1-203ENST00000547825 3920 ntAPPRIS ALT2 TSL 1 (best) BASIC5.24□□□□□ -1.57
USP41Q3LFD5 PRUNE2-207ENST00000428286 12437 ntTSL 5 BASIC5.24□□□□□ -1.57
USP41Q3LFD5 EDA2R-202ENST00000374719 3418 ntAPPRIS P3 TSL 1 (best) BASIC5.24□□□□□ -1.57
USP41Q3LFD5 SMG1P7-201ENST00000565246 2704 ntBASIC5.24□□□□□ -1.57
USP41Q3LFD5 MIR620-201ENST00000385232 95 ntBASIC5.24□□□□□ -1.57
USP41Q3LFD5 MT-TP-201ENST00000387461 68 ntBASIC5.24□□□□□ -1.57
USP41Q3LFD5 TRAV12-2-201ENST00000390437 445 ntAPPRIS P1 BASIC5.24□□□□□ -1.57
USP41Q3LFD5 AL035405.1-201ENST00000400795 710 ntBASIC5.24□□□□□ -1.57
USP41Q3LFD5 AC114755.2-201ENST00000413520 361 ntBASIC5.24□□□□□ -1.57
USP41Q3LFD5 AC097717.1-233ENST00000413557 460 ntTSL 3 BASIC5.24□□□□□ -1.57
USP41Q3LFD5 TATDN1P1-201ENST00000414123 891 ntBASIC5.24□□□□□ -1.57
USP41Q3LFD5 AL590806.1-201ENST00000415818 853 ntBASIC5.24□□□□□ -1.57
USP41Q3LFD5 MTND2P15-201ENST00000418575 892 ntBASIC5.24□□□□□ -1.57
USP41Q3LFD5 AL590666.1-201ENST00000428641 433 ntTSL 2 BASIC5.24□□□□□ -1.57
USP41Q3LFD5 DNAJC19P7-201ENST00000428811 344 ntBASIC5.24□□□□□ -1.57
USP41Q3LFD5 AL512637.2-201ENST00000431287 1256 ntBASIC5.24□□□□□ -1.57
USP41Q3LFD5 LINC00280-201ENST00000439525 448 ntTSL 2 BASIC5.24□□□□□ -1.57
USP41Q3LFD5 GTF3AP5-201ENST00000442645 697 ntBASIC5.24□□□□□ -1.57
USP41Q3LFD5 TMEM212-IT1-201ENST00000456146 470 ntTSL 3 BASIC5.24□□□□□ -1.57
USP41Q3LFD5 HNRNPDLP3-201ENST00000456745 380 ntBASIC5.24□□□□□ -1.57
USP41Q3LFD5 SYT14P1-201ENST00000481459 721 ntBASIC5.24□□□□□ -1.57
USP41Q3LFD5 LINC02231-201ENST00000510459 447 ntTSL 3 BASIC5.24□□□□□ -1.57
USP41Q3LFD5 AC010374.2-201ENST00000512933 535 ntBASIC5.24□□□□□ -1.57
USP41Q3LFD5 AC097460.1-204ENST00000515026 764 ntTSL 5 BASIC5.24□□□□□ -1.57
USP41Q3LFD5 SOX5P1-201ENST00000524155 1127 ntBASIC5.24□□□□□ -1.57
USP41Q3LFD5 C1GALT1P1-201ENST00000548895 1089 ntBASIC5.24□□□□□ -1.57
USP41Q3LFD5 AL163932.1-201ENST00000555776 542 ntTSL 4 BASIC5.24□□□□□ -1.57
USP41Q3LFD5 AC018552.1-201ENST00000562099 811 ntBASIC5.24□□□□□ -1.57
USP41Q3LFD5 ARPP19-204ENST00000563277 955 ntTSL 2 BASIC5.24□□□□□ -1.57
USP41Q3LFD5 AC007599.2-201ENST00000573040 493 ntTSL 5 BASIC5.24□□□□□ -1.57
USP41Q3LFD5 AC233702.9-201ENST00000581528 203 ntBASIC5.24□□□□□ -1.57
USP41Q3LFD5 CBX3P2-202ENST00000583365 535 ntBASIC5.24□□□□□ -1.57
USP41Q3LFD5 AL157938.2-205ENST00000586290 891 ntTSL 5 BASIC5.24□□□□□ -1.57
USP41Q3LFD5 AC004596.1-201ENST00000586560 528 ntTSL 3 BASIC5.24□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 99.7 ms