Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC008147.3-201ENST00000548666 354 ntBASIC4.19□□□□□ -1.74
FOXA1P55317 AC009803.1-202ENST00000551940 544 ntTSL 4 BASIC4.19□□□□□ -1.74
FOXA1P55317 AP005119.2-201ENST00000579735 1105 ntBASIC4.19□□□□□ -1.74
FOXA1P55317 MIR4270-201ENST00000581799 70 ntBASIC4.19□□□□□ -1.74
FOXA1P55317 AC069061.3-201ENST00000582254 823 ntBASIC4.19□□□□□ -1.74
FOXA1P55317 ZNF540-204ENST00000586792 564 ntTSL 3 BASIC4.19□□□□□ -1.74
FOXA1P55317 AC067968.2-201ENST00000592583 566 ntTSL 4 BASIC4.19□□□□□ -1.74
FOXA1P55317 AC115286.1-201ENST00000604298 434 ntBASIC4.19□□□□□ -1.74
FOXA1P55317 MIR432-201ENST00000606207 94 ntBASIC4.19□□□□□ -1.74
FOXA1P55317 CASC19-222ENST00000641321 1173 ntBASIC4.19□□□□□ -1.74
FOXA1P55317 UTP20-201ENST00000261637 9025 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
FOXA1P55317 RAD17P1-201ENST00000418130 2042 ntBASIC4.19□□□□□ -1.74
FOXA1P55317 ARPP21-202ENST00000396481 1304 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
FOXA1P55317 ACTR3BP2-202ENST00000623630 1338 ntBASIC4.19□□□□□ -1.74
FOXA1P55317 MGA-202ENST00000545763 11413 ntAPPRIS ALT2 TSL 5 BASIC4.18□□□□□ -1.74
FOXA1P55317 LINC01102-204ENST00000451400 3778 ntTSL 2 BASIC4.18□□□□□ -1.74
FOXA1P55317 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC4.18□□□□□ -1.74
FOXA1P55317 GABRG2-210ENST00000638772 7669 ntTSL 5 BASIC4.18□□□□□ -1.74
FOXA1P55317 Z95327.2-201ENST00000414579 1873 ntBASIC4.18□□□□□ -1.74
FOXA1P55317 NOL8P1-201ENST00000508336 3529 ntBASIC4.18□□□□□ -1.74
FOXA1P55317 LMNTD1-202ENST00000413632 1520 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
FOXA1P55317 AL160275.2-201ENST00000412010 394 ntBASIC4.18□□□□□ -1.74
FOXA1P55317 GNG12-AS1-202ENST00000414904 796 ntTSL 3 BASIC4.18□□□□□ -1.74
FOXA1P55317 TMSB10P2-201ENST00000416049 131 ntBASIC4.18□□□□□ -1.74
FOXA1P55317 AL590723.1-201ENST00000426030 629 ntTSL 5 BASIC4.18□□□□□ -1.74
FOXA1P55317 AC006455.6-201ENST00000426192 893 ntBASIC4.18□□□□□ -1.74
FOXA1P55317 AL451140.1-201ENST00000430534 371 ntTSL 3 BASIC4.18□□□□□ -1.74
FOXA1P55317 LINC02476-202ENST00000431071 559 ntTSL 4 BASIC4.18□□□□□ -1.74
FOXA1P55317 AC104164.2-201ENST00000496953 495 ntBASIC4.18□□□□□ -1.74
FOXA1P55317 THAP6-209ENST00000507556 1134 ntTSL 2 BASIC4.18□□□□□ -1.74
FOXA1P55317 AC027176.2-201ENST00000559166 746 ntBASIC4.18□□□□□ -1.74
FOXA1P55317 AC084783.1-201ENST00000565846 910 ntBASIC4.18□□□□□ -1.74
FOXA1P55317 AC021483.2-201ENST00000567415 758 ntBASIC4.18□□□□□ -1.74
FOXA1P55317 MIR4480-201ENST00000582492 71 ntBASIC4.18□□□□□ -1.74
FOXA1P55317 AC015813.4-201ENST00000610469 179 ntBASIC4.18□□□□□ -1.74
FOXA1P55317 AC138907.10-201ENST00000623708 983 ntBASIC4.18□□□□□ -1.74
FOXA1P55317 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
FOXA1P55317 NRK-204ENST00000540278 1687 ntTSL 2 BASIC4.18□□□□□ -1.74
FOXA1P55317 AC107953.2-201ENST00000518362 1408 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
FOXA1P55317 AC089984.1-201ENST00000552780 1431 ntTSL 3 BASIC4.18□□□□□ -1.74
FOXA1P55317 AC000123.3-201ENST00000624029 4975 ntBASIC4.18□□□□□ -1.74
FOXA1P55317 MAPK10-253ENST00000641010 4072 ntBASIC4.18□□□□□ -1.74
FOXA1P55317 DOCK7-211ENST00000634264 6303 ntAPPRIS ALT2 TSL 5 BASIC4.18□□□□□ -1.74
FOXA1P55317 AC068254.2-201ENST00000623938 3577 ntBASIC4.18□□□□□ -1.74
FOXA1P55317 GYPA-212ENST00000616983 2538 ntAPPRIS ALT2 TSL 5 BASIC4.18□□□□□ -1.74
FOXA1P55317 PLCB1-233ENST00000637919 5074 ntTSL 5 BASIC4.18□□□□□ -1.74
FOXA1P55317 GRAMD1C-208ENST00000472026 1876 ntTSL 2 BASIC4.18□□□□□ -1.74
FOXA1P55317 AC090518.1-201ENST00000562300 1495 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
FOXA1P55317 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
FOXA1P55317 AL157756.1-201ENST00000532515 2859 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
FOXA1P55317 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC4.17□□□□□ -1.74
FOXA1P55317 LARP4-202ENST00000347328 3621 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
FOXA1P55317 DTNA-208ENST00000554864 1680 ntAPPRIS ALT2 TSL 1 (best) BASIC4.17□□□□□ -1.74
FOXA1P55317 ZFAND6-223ENST00000616533 1653 ntAPPRIS P1 TSL 5 BASIC4.17□□□□□ -1.74
FOXA1P55317 MIR331-201ENST00000362302 94 ntBASIC4.17□□□□□ -1.74
FOXA1P55317 AC012358.3-203ENST00000366287 1110 ntTSL 3 BASIC4.17□□□□□ -1.74
FOXA1P55317 DPRX-201ENST00000376650 648 ntAPPRIS P1 TSL 3 BASIC4.17□□□□□ -1.74
FOXA1P55317 MIR550A3-201ENST00000390735 95 ntBASIC4.17□□□□□ -1.74
FOXA1P55317 OR52A4P-201ENST00000472867 958 ntBASIC4.17□□□□□ -1.74
FOXA1P55317 AC090193.1-201ENST00000518633 543 ntTSL 4 BASIC4.17□□□□□ -1.74
FOXA1P55317 MIR4700-201ENST00000578311 74 ntBASIC4.17□□□□□ -1.74
FOXA1P55317 RPL26-204ENST00000578812 1002 ntTSL 2 BASIC4.17□□□□□ -1.74
FOXA1P55317 AC024940.4-201ENST00000605507 246 ntBASIC4.17□□□□□ -1.74
FOXA1P55317 AC005392.3-201ENST00000607109 459 ntTSL 2 BASIC4.17□□□□□ -1.74
FOXA1P55317 AC064801.1-201ENST00000612025 407 ntBASIC4.17□□□□□ -1.74
FOXA1P55317 AL021997.2-201ENST00000615674 271 ntBASIC4.17□□□□□ -1.74
FOXA1P55317 MIR7703-201ENST00000620784 77 ntBASIC4.17□□□□□ -1.74
FOXA1P55317 AC021106.3-201ENST00000623925 531 ntBASIC4.17□□□□□ -1.74
FOXA1P55317 ZNF962P-201ENST00000443465 3140 ntBASIC4.17□□□□□ -1.74
FOXA1P55317 AC011266.1-201ENST00000624119 3569 ntBASIC4.17□□□□□ -1.74
FOXA1P55317 RGS5-201ENST00000313961 5862 ntAPPRIS P3 TSL 1 (best) BASIC4.17□□□□□ -1.74
FOXA1P55317 AP1G1-207ENST00000564155 2723 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
FOXA1P55317 ST7-212ENST00000422922 1887 ntTSL 5 BASIC4.17□□□□□ -1.74
FOXA1P55317 ZNF442-205ENST00000545749 1884 ntAPPRIS P1 TSL 5 BASIC4.17□□□□□ -1.74
FOXA1P55317 CUL2-201ENST00000374746 3903 ntTSL 5 BASIC4.17□□□□□ -1.74
FOXA1P55317 LTA4H-202ENST00000413268 1908 ntTSL 2 BASIC4.17□□□□□ -1.74
FOXA1P55317 PTCD2-202ENST00000380639 11151 ntAPPRIS P1 TSL 5 BASIC4.16□□□□□ -1.74
FOXA1P55317 THAP12P8-201ENST00000447914 2115 ntBASIC4.16□□□□□ -1.74
FOXA1P55317 ALCAM-207ENST00000486979 1818 ntTSL 5 BASIC4.16□□□□□ -1.74
FOXA1P55317 NAP1L1-204ENST00000535020 1686 ntTSL 2 BASIC4.16□□□□□ -1.74
FOXA1P55317 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC4.16□□□□□ -1.74
FOXA1P55317 ADGRG2-201ENST00000340581 3594 ntTSL 2 BASIC4.16□□□□□ -1.74
FOXA1P55317 DHX40P1-201ENST00000588725 1412 ntBASIC4.16□□□□□ -1.74
FOXA1P55317 LAMTOR3-201ENST00000226522 1220 ntTSL 3 BASIC4.16□□□□□ -1.74
FOXA1P55317 AL353740.1-201ENST00000366253 575 ntTSL 2 BASIC4.16□□□□□ -1.74
FOXA1P55317 RHOT1P2-201ENST00000366423 333 ntBASIC4.16□□□□□ -1.74
FOXA1P55317 TMLHE-202ENST00000369439 1248 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
FOXA1P55317 C1orf194-204ENST00000369949 731 ntTSL 2 BASIC4.16□□□□□ -1.74
FOXA1P55317 MIR93-201ENST00000385024 80 ntBASIC4.16□□□□□ -1.74
FOXA1P55317 RPL23AP59-201ENST00000399415 461 ntBASIC4.16□□□□□ -1.74
FOXA1P55317 LINC01423-201ENST00000414189 608 ntTSL 3 BASIC4.16□□□□□ -1.74
FOXA1P55317 CPB2-AS1-201ENST00000415033 747 ntTSL 3 BASIC4.16□□□□□ -1.74
FOXA1P55317 MIRLET7DHG-201ENST00000416309 1294 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
FOXA1P55317 AL161631.1-201ENST00000417933 486 ntBASIC4.16□□□□□ -1.74
FOXA1P55317 AC006065.1-201ENST00000422539 802 ntBASIC4.16□□□□□ -1.74
FOXA1P55317 AL590999.1-204ENST00000430595 638 ntTSL 3 BASIC4.16□□□□□ -1.74
FOXA1P55317 TPTE2P1-203ENST00000434100 514 ntTSL 3 BASIC4.16□□□□□ -1.74
FOXA1P55317 EIF4A2P2-201ENST00000455776 1070 ntBASIC4.16□□□□□ -1.74
FOXA1P55317 RPL35AP28-201ENST00000459730 331 ntBASIC4.16□□□□□ -1.74
FOXA1P55317 RN7SL812P-201ENST00000493791 279 ntBASIC4.16□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 92.5 ms