Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 RNA5SP428-201ENST00000365129 132 ntBASIC5.21□□□□□ -1.58
PTPN9P43378 RNA5SP455-201ENST00000365190 119 ntBASIC5.21□□□□□ -1.58
PTPN9P43378 SPINK9-201ENST00000377906 453 ntAPPRIS P2 TSL 1 (best) BASIC5.21□□□□□ -1.58
PTPN9P43378 SNORA70.10-201ENST00000384515 134 ntBASIC5.21□□□□□ -1.58
PTPN9P43378 CLYBL-AS1-201ENST00000416009 621 ntTSL 3 BASIC5.21□□□□□ -1.58
PTPN9P43378 LINC01347-201ENST00000417964 355 ntBASIC5.21□□□□□ -1.58
PTPN9P43378 AC073333.1-201ENST00000418907 648 ntTSL 3 BASIC5.21□□□□□ -1.58
PTPN9P43378 ETF1P3-201ENST00000430422 1160 ntBASIC5.21□□□□□ -1.58
PTPN9P43378 FABP5P3-201ENST00000437960 408 ntBASIC5.21□□□□□ -1.58
PTPN9P43378 AC004824.1-201ENST00000439577 311 ntTSL 5 BASIC5.21□□□□□ -1.58
PTPN9P43378 AL732323.1-201ENST00000445897 456 ntTSL 3 BASIC5.21□□□□□ -1.58
PTPN9P43378 DUXAP8-207ENST00000456786 622 ntBASIC5.21□□□□□ -1.58
PTPN9P43378 AL390783.1-203ENST00000457058 248 ntTSL 3 BASIC5.21□□□□□ -1.58
PTPN9P43378 AC021205.1-201ENST00000468797 348 ntBASIC5.21□□□□□ -1.58
PTPN9P43378 RN7SL177P-201ENST00000476596 299 ntBASIC5.21□□□□□ -1.58
PTPN9P43378 AC108748.1-201ENST00000487772 515 ntTSL 3 BASIC5.21□□□□□ -1.58
PTPN9P43378 COX6B1P2-201ENST00000489624 230 ntBASIC5.21□□□□□ -1.58
PTPN9P43378 AC010374.1-201ENST00000503762 1237 ntBASIC5.21□□□□□ -1.58
PTPN9P43378 AC026414.1-201ENST00000504046 698 ntBASIC5.21□□□□□ -1.58
PTPN9P43378 LINC02465-202ENST00000508724 503 ntTSL 3 BASIC5.21□□□□□ -1.58
PTPN9P43378 AC004980.4-201ENST00000513375 203 ntBASIC5.21□□□□□ -1.58
PTPN9P43378 MAL2-205ENST00000521048 575 ntTSL 4 BASIC5.21□□□□□ -1.58
PTPN9P43378 OR10G5P-201ENST00000532733 358 ntBASIC5.21□□□□□ -1.58
PTPN9P43378 AC006206.2-202ENST00000537714 648 ntTSL 5 BASIC5.21□□□□□ -1.58
PTPN9P43378 AC078880.2-201ENST00000547948 843 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
PTPN9P43378 AC024909.1-201ENST00000549278 599 ntTSL 4 BASIC5.21□□□□□ -1.58
PTPN9P43378 AC138360.1-201ENST00000552332 386 ntTSL 3 BASIC5.21□□□□□ -1.58
PTPN9P43378 AC007424.1-205ENST00000552615 579 ntTSL 4 BASIC5.21□□□□□ -1.58
PTPN9P43378 AL445363.1-202ENST00000553697 545 ntTSL 3 BASIC5.21□□□□□ -1.58
PTPN9P43378 AC104938.1-202ENST00000563041 630 ntTSL 3 BASIC5.21□□□□□ -1.58
PTPN9P43378 AP000919.1-202ENST00000581139 1264 ntBASIC5.21□□□□□ -1.58
PTPN9P43378 AC006116.5-201ENST00000591936 559 ntBASIC5.21□□□□□ -1.58
PTPN9P43378 AL606834.3-201ENST00000602615 496 ntBASIC5.21□□□□□ -1.58
PTPN9P43378 AC104687.2-201ENST00000604442 342 ntBASIC5.21□□□□□ -1.58
PTPN9P43378 AC005377.1-201ENST00000605126 456 ntBASIC5.21□□□□□ -1.58
PTPN9P43378 OR2BH1P-201ENST00000608850 864 ntBASIC5.21□□□□□ -1.58
PTPN9P43378 DUXAP10-204ENST00000612052 616 ntBASIC5.21□□□□□ -1.58
PTPN9P43378 AC010435.1-201ENST00000623353 1177 ntBASIC5.21□□□□□ -1.58
PTPN9P43378 MEG8-222ENST00000637332 1237 ntTSL 5 BASIC5.21□□□□□ -1.58
PTPN9P43378 FAM197Y3-202ENST00000427622 2325 ntTSL 5 BASIC5.21□□□□□ -1.58
PTPN9P43378 FAM197Y7-202ENST00000433321 2325 ntTSL 2 BASIC5.21□□□□□ -1.58
PTPN9P43378 LINC00504-201ENST00000505089 4672 ntTSL 2 BASIC5.21□□□□□ -1.58
PTPN9P43378 VPS35P1-201ENST00000563400 1518 ntBASIC5.21□□□□□ -1.58
PTPN9P43378 AC100778.3-201ENST00000580060 1750 ntBASIC5.21□□□□□ -1.58
PTPN9P43378 AC133552.1-201ENST00000569988 4007 ntBASIC5.21□□□□□ -1.58
PTPN9P43378 UGT2B10-202ENST00000458688 1424 ntTSL 2 BASIC5.21□□□□□ -1.58
PTPN9P43378 PROM1-220ENST00000540805 3908 ntAPPRIS ALT2 TSL 5 BASIC5.21□□□□□ -1.58
PTPN9P43378 LINC02476-201ENST00000426413 1577 ntTSL 2 BASIC5.21□□□□□ -1.58
PTPN9P43378 AL022322.2-201ENST00000624072 20397 ntBASIC5.21□□□□□ -1.58
PTPN9P43378 ZEB1-202ENST00000361642 5990 ntAPPRIS ALT2 TSL 1 (best) BASIC5.2□□□□□ -1.58
PTPN9P43378 CASC17-201ENST00000569074 2059 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
PTPN9P43378 SEC31A-201ENST00000264405 3447 ntTSL 2 BASIC5.2□□□□□ -1.58
PTPN9P43378 C6-202ENST00000337836 3551 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
PTPN9P43378 CLVS1-201ENST00000325897 3486 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
PTPN9P43378 WDR5B-201ENST00000330689 3720 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
PTPN9P43378 RANBP3L-201ENST00000296604 3104 ntAPPRIS P3 TSL 1 (best) BASIC5.2□□□□□ -1.58
PTPN9P43378 BTBD10P1-201ENST00000549824 1352 ntBASIC5.2□□□□□ -1.58
PTPN9P43378 ZBED6-201ENST00000545588 7979 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
PTPN9P43378 SULF1-204ENST00000458141 5551 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
PTPN9P43378 EDA2R-202ENST00000374719 3418 ntAPPRIS P3 TSL 1 (best) BASIC5.2□□□□□ -1.58
PTPN9P43378 TSPAN8-202ENST00000393330 1516 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
PTPN9P43378 OR10A5-201ENST00000299454 1054 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
PTPN9P43378 DNAJC12-202ENST00000339758 1064 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
PTPN9P43378 KLRC2-201ENST00000381901 1211 ntAPPRIS ALT2 TSL 5 BASIC5.2□□□□□ -1.58
PTPN9P43378 KLRC2-202ENST00000381902 1221 ntAPPRIS P2 TSL 1 (best) BASIC5.2□□□□□ -1.58
PTPN9P43378 CCL7-203ENST00000394630 687 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
PTPN9P43378 Z97832.1-201ENST00000402490 328 ntBASIC5.2□□□□□ -1.58
PTPN9P43378 HMGB1P13-201ENST00000406019 642 ntBASIC5.2□□□□□ -1.58
PTPN9P43378 RNU4-34P-201ENST00000410431 124 ntBASIC5.2□□□□□ -1.58
PTPN9P43378 RNA5SP498-201ENST00000411342 120 ntBASIC5.2□□□□□ -1.58
PTPN9P43378 AC010385.1-201ENST00000412374 256 ntBASIC5.2□□□□□ -1.58
PTPN9P43378 AL365184.1-201ENST00000413801 572 ntTSL 3 BASIC5.2□□□□□ -1.58
PTPN9P43378 AC104389.1-201ENST00000418080 522 ntTSL 3 BASIC5.2□□□□□ -1.58
PTPN9P43378 QRSL1P2-201ENST00000418582 964 ntBASIC5.2□□□□□ -1.58
PTPN9P43378 AL049637.1-201ENST00000424664 503 ntTSL 5 BASIC5.2□□□□□ -1.58
PTPN9P43378 ZNF736P7Y-201ENST00000425158 820 ntBASIC5.2□□□□□ -1.58
PTPN9P43378 AC009478.1-201ENST00000429816 562 ntTSL 3 BASIC5.2□□□□□ -1.58
PTPN9P43378 AC016903.1-201ENST00000444017 588 ntTSL 4 BASIC5.2□□□□□ -1.58
PTPN9P43378 AL356421.2-201ENST00000446733 197 ntTSL 3 BASIC5.2□□□□□ -1.58
PTPN9P43378 BTF3P6-201ENST00000448054 499 ntBASIC5.2□□□□□ -1.58
PTPN9P43378 AC073850.1-201ENST00000449243 255 ntBASIC5.2□□□□□ -1.58
PTPN9P43378 AL356981.1-201ENST00000454879 684 ntBASIC5.2□□□□□ -1.58
PTPN9P43378 FO393415.3-201ENST00000456424 375 ntTSL 3 BASIC5.2□□□□□ -1.58
PTPN9P43378 AC073636.1-202ENST00000457756 558 ntTSL 4 BASIC5.2□□□□□ -1.58
PTPN9P43378 AC026348.1-201ENST00000462549 1053 ntBASIC5.2□□□□□ -1.58
PTPN9P43378 AC026316.2-201ENST00000473110 263 ntTSL 3 BASIC5.2□□□□□ -1.58
PTPN9P43378 AC069304.1-201ENST00000491593 704 ntBASIC5.2□□□□□ -1.58
PTPN9P43378 RPS4XP14-201ENST00000493072 781 ntBASIC5.2□□□□□ -1.58
PTPN9P43378 LINC02508-201ENST00000504165 426 ntTSL 3 BASIC5.2□□□□□ -1.58
PTPN9P43378 GPX8-208ENST00000515370 1036 ntTSL 2 BASIC5.2□□□□□ -1.58
PTPN9P43378 AC023632.5-201ENST00000521010 491 ntTSL 3 BASIC5.2□□□□□ -1.58
PTPN9P43378 AC021451.1-201ENST00000523498 1129 ntBASIC5.2□□□□□ -1.58
PTPN9P43378 EIF4A2P5-201ENST00000529914 499 ntBASIC5.2□□□□□ -1.58
PTPN9P43378 AC114546.1-201ENST00000560140 473 ntTSL 3 BASIC5.2□□□□□ -1.58
PTPN9P43378 AC010551.2-201ENST00000569200 416 ntTSL 3 BASIC5.2□□□□□ -1.58
PTPN9P43378 AC005154.1-213ENST00000578572 445 ntTSL 3 BASIC5.2□□□□□ -1.58
PTPN9P43378 AC217774.1-201ENST00000578936 517 ntTSL 4 BASIC5.2□□□□□ -1.58
PTPN9P43378 OR7E18P-201ENST00000592589 702 ntBASIC5.2□□□□□ -1.58
PTPN9P43378 AC099785.1-201ENST00000605697 437 ntBASIC5.2□□□□□ -1.58
PTPN9P43378 AC093673.2-201ENST00000609674 331 ntBASIC5.2□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 72.7 ms