Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AC120057.2-201ENST00000571520 271 ntBASIC5.63□□□□□ -1.51
COL18A1P39060 ABHD15-AS1-201ENST00000581474 187 ntTSL 5 BASIC5.63□□□□□ -1.51
COL18A1P39060 MALAT1-210ENST00000617489 318 ntTSL 2 BASIC5.63□□□□□ -1.51
COL18A1P39060 ATF7IP-201ENST00000261168 8878 ntAPPRIS P3 TSL 5 BASIC5.63□□□□□ -1.51
COL18A1P39060 TTC41P-205ENST00000551270 3963 ntBASIC5.63□□□□□ -1.51
COL18A1P39060 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC5.63□□□□□ -1.51
COL18A1P39060 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC5.63□□□□□ -1.51
COL18A1P39060 AC092162.3-201ENST00000624511 1624 ntBASIC5.63□□□□□ -1.51
COL18A1P39060 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
COL18A1P39060 ZFHX3-207ENST00000641206 16414 ntAPPRIS P1 BASIC5.63□□□□□ -1.51
COL18A1P39060 DNHD1-212ENST00000527990 14298 ntAPPRIS P1 TSL 5 BASIC5.63□□□□□ -1.51
COL18A1P39060 OSBPL11-201ENST00000296220 4191 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
COL18A1P39060 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
COL18A1P39060 FOXP2-220ENST00000634411 4065 ntTSL 5 BASIC5.63□□□□□ -1.51
COL18A1P39060 AC116667.1-201ENST00000604855 2072 ntBASIC5.63□□□□□ -1.51
COL18A1P39060 RIMS2-205ENST00000436393 4384 ntTSL 2 BASIC5.63□□□□□ -1.51
COL18A1P39060 PANK1-203ENST00000342512 2703 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
COL18A1P39060 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC5.62□□□□□ -1.51
COL18A1P39060 CDC42BPA-204ENST00000366767 9320 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
COL18A1P39060 AL592291.1-201ENST00000403830 352 ntBASIC5.62□□□□□ -1.51
COL18A1P39060 AC018644.1-201ENST00000429934 551 ntBASIC5.62□□□□□ -1.51
COL18A1P39060 AL355601.1-201ENST00000444701 427 ntTSL 3 BASIC5.62□□□□□ -1.51
COL18A1P39060 LINC01192-207ENST00000492553 836 ntTSL 5 BASIC5.62□□□□□ -1.51
COL18A1P39060 OR4A2P-201ENST00000527276 913 ntBASIC5.62□□□□□ -1.51
COL18A1P39060 FOPNL-208ENST00000575744 565 ntTSL 4 BASIC5.62□□□□□ -1.51
COL18A1P39060 AC107982.3-201ENST00000584957 985 ntBASIC5.62□□□□□ -1.51
COL18A1P39060 LGALS13-204ENST00000621475 494 ntAPPRIS ALT2 TSL 5 BASIC5.62□□□□□ -1.51
COL18A1P39060 ZNF850-203ENST00000614887 7625 ntAPPRIS ALT2 TSL 1 (best) BASIC5.62□□□□□ -1.51
COL18A1P39060 AC126323.6-202ENST00000568092 3511 ntBASIC5.62□□□□□ -1.51
COL18A1P39060 PCDH15-214ENST00000395446 3948 ntTSL 5 BASIC5.62□□□□□ -1.51
COL18A1P39060 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC5.62□□□□□ -1.51
COL18A1P39060 GCSAML-201ENST00000366488 3820 ntAPPRIS P3 TSL 1 (best) BASIC5.62□□□□□ -1.51
COL18A1P39060 DSC3-201ENST00000360428 6939 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
COL18A1P39060 POC1B-201ENST00000313546 3001 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
COL18A1P39060 CASC19-261ENST00000641853 1638 ntBASIC5.62□□□□□ -1.51
COL18A1P39060 SAMD9L-204ENST00000437805 5757 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
COL18A1P39060 RDH10-AS1-201ENST00000514599 3261 ntTSL 2 BASIC5.62□□□□□ -1.51
COL18A1P39060 SLC4A7-206ENST00000428386 7385 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
COL18A1P39060 SNORA73.2-201ENST00000364946 201 ntBASIC5.62□□□□□ -1.51
COL18A1P39060 SNORA9-201ENST00000384215 133 ntBASIC5.62□□□□□ -1.51
COL18A1P39060 RPS26P4-201ENST00000431743 355 ntBASIC5.62□□□□□ -1.51
COL18A1P39060 AC010884.1-201ENST00000456519 642 ntTSL 3 BASIC5.62□□□□□ -1.51
COL18A1P39060 RPL7P22-201ENST00000466005 733 ntBASIC5.62□□□□□ -1.51
COL18A1P39060 AC098869.2-201ENST00000514187 862 ntTSL 3 BASIC5.62□□□□□ -1.51
COL18A1P39060 RNA5SP497-201ENST00000516081 97 ntBASIC5.62□□□□□ -1.51
COL18A1P39060 TPT1-AS1-216ENST00000522845 403 ntTSL 3 BASIC5.62□□□□□ -1.51
COL18A1P39060 AC068643.1-201ENST00000548594 755 ntTSL 5 BASIC5.62□□□□□ -1.51
COL18A1P39060 AC099669.2-201ENST00000616549 437 ntBASIC5.62□□□□□ -1.51
COL18A1P39060 VPS29-212ENST00000621131 1124 ntTSL 3 BASIC5.62□□□□□ -1.51
COL18A1P39060 AL356121.2-201ENST00000624715 780 ntBASIC5.62□□□□□ -1.51
COL18A1P39060 AL079305.1-201ENST00000623159 3008 ntBASIC5.62□□□□□ -1.51
COL18A1P39060 AC104623.2-202ENST00000623477 4002 ntBASIC5.62□□□□□ -1.51
COL18A1P39060 ZNF431-201ENST00000311048 13894 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
COL18A1P39060 ECT2L-201ENST00000367682 4343 ntAPPRIS P1 TSL 5 BASIC5.61□□□□□ -1.51
COL18A1P39060 OPRM1-217ENST00000522236 2459 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
COL18A1P39060 ZNF765-201ENST00000396408 4569 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
COL18A1P39060 ESRRG-208ENST00000391890 5542 ntAPPRIS P1 TSL 5 BASIC5.61□□□□□ -1.51
COL18A1P39060 Y_RNA.333-201ENST00000365274 102 ntBASIC5.61□□□□□ -1.51
COL18A1P39060 NOTCH2P1-201ENST00000443481 624 ntBASIC5.61□□□□□ -1.51
COL18A1P39060 AL157884.3-201ENST00000448273 1184 ntBASIC5.61□□□□□ -1.51
COL18A1P39060 NANOGP10-201ENST00000453325 895 ntBASIC5.61□□□□□ -1.51
COL18A1P39060 AC092546.1-202ENST00000505628 499 ntTSL 2 BASIC5.61□□□□□ -1.51
COL18A1P39060 AC026403.1-201ENST00000518938 295 ntBASIC5.61□□□□□ -1.51
COL18A1P39060 YPEL5P3-201ENST00000547227 352 ntBASIC5.61□□□□□ -1.51
COL18A1P39060 LINC02326-201ENST00000552028 540 ntTSL 3 BASIC5.61□□□□□ -1.51
COL18A1P39060 IGHV4OR15-8-201ENST00000557788 353 ntAPPRIS P1 BASIC5.61□□□□□ -1.51
COL18A1P39060 ZNF66-203ENST00000594534 757 ntTSL 5 BASIC5.61□□□□□ -1.51
COL18A1P39060 AC069200.1-201ENST00000609511 323 ntBASIC5.61□□□□□ -1.51
COL18A1P39060 FAM49B-229ENST00000615041 750 ntTSL 5 BASIC5.61□□□□□ -1.51
COL18A1P39060 AC245452.5-201ENST00000620649 780 ntTSL 3 BASIC5.61□□□□□ -1.51
COL18A1P39060 AC135068.2-201ENST00000622410 353 ntAPPRIS P1 BASIC5.61□□□□□ -1.51
COL18A1P39060 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC5.61□□□□□ -1.51
COL18A1P39060 KMT5B-215ENST00000615954 4306 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
COL18A1P39060 ZNF567-203ENST00000585696 3734 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
COL18A1P39060 AL672167.1-204ENST00000641875 3017 ntBASIC5.61□□□□□ -1.51
COL18A1P39060 ZBTB21-201ENST00000310826 7449 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
COL18A1P39060 ZBTB8A-202ENST00000373510 7075 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
COL18A1P39060 JAKMIP2-205ENST00000507386 5915 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
COL18A1P39060 AL355592.1-201ENST00000450292 386 ntTSL 2 BASIC5.6□□□□□ -1.51
COL18A1P39060 ATP5G1P3-201ENST00000463301 410 ntBASIC5.6□□□□□ -1.51
COL18A1P39060 OR5D2P-201ENST00000524390 911 ntBASIC5.6□□□□□ -1.51
COL18A1P39060 RERG-AS1-201ENST00000541243 337 ntTSL 2 BASIC5.6□□□□□ -1.51
COL18A1P39060 AC079598.1-201ENST00000548691 554 ntTSL 4 BASIC5.6□□□□□ -1.51
COL18A1P39060 AC073525.1-202ENST00000550049 732 ntTSL 3 BASIC5.6□□□□□ -1.51
COL18A1P39060 RYR3-212ENST00000634891 15591 ntAPPRIS P3 TSL 1 (best) BASIC5.6□□□□□ -1.51
COL18A1P39060 CRB1-209ENST00000535699 5140 ntTSL 5 BASIC5.6□□□□□ -1.51
COL18A1P39060 OFD1P5Y-201ENST00000447585 2590 ntBASIC5.6□□□□□ -1.51
COL18A1P39060 ADNP-202ENST00000371602 6115 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
COL18A1P39060 XPNPEP3-201ENST00000357137 7988 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
COL18A1P39060 TRIP12-204ENST00000389045 5355 ntAPPRIS ALT2 TSL 1 (best) BASIC5.6□□□□□ -1.51
COL18A1P39060 ETV1-205ENST00000405192 4402 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
COL18A1P39060 EIF3EP2-201ENST00000423042 1814 ntBASIC5.6□□□□□ -1.51
COL18A1P39060 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC5.6□□□□□ -1.51
COL18A1P39060 PTPRZ1-202ENST00000449182 4627 ntAPPRIS ALT2 TSL 1 (best) BASIC5.6□□□□□ -1.51
COL18A1P39060 FGF1-202ENST00000359370 3660 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
COL18A1P39060 NCOA2-201ENST00000452400 8447 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
COL18A1P39060 SULF1-201ENST00000260128 5710 ntAPPRIS P1 TSL 5 BASIC5.6□□□□□ -1.51
COL18A1P39060 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
COL18A1P39060 TEAD1-203ENST00000526600 8477 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
COL18A1P39060 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC5.6□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 82 ms