Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 AC005358.1-201ENST00000445508 1143 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
BRCA1P38398 DNM3-IT1-201ENST00000450800 396 ntTSL 3 BASIC5.32□□□□□ -1.56
BRCA1P38398 ATP5G1P3-201ENST00000463301 410 ntBASIC5.32□□□□□ -1.56
BRCA1P38398 KCTD9P2-201ENST00000512203 1013 ntBASIC5.32□□□□□ -1.56
BRCA1P38398 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC5.32□□□□□ -1.56
BRCA1P38398 AC105031.1-201ENST00000518550 476 ntBASIC5.32□□□□□ -1.56
BRCA1P38398 DUXAP2-201ENST00000519198 589 ntBASIC5.32□□□□□ -1.56
BRCA1P38398 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC5.32□□□□□ -1.56
BRCA1P38398 SRGNP1-201ENST00000603392 451 ntBASIC5.32□□□□□ -1.56
BRCA1P38398 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
BRCA1P38398 MIR6500-201ENST00000622700 86 ntBASIC5.32□□□□□ -1.56
BRCA1P38398 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
BRCA1P38398 CASC19-284ENST00000642142 1868 ntBASIC5.32□□□□□ -1.56
BRCA1P38398 ARHGAP20-204ENST00000528829 5880 ntAPPRIS ALT2 TSL 1 (best) BASIC5.32□□□□□ -1.56
BRCA1P38398 ING3-201ENST00000315870 3777 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
BRCA1P38398 HECTD4-211ENST00000550722 15450 ntAPPRIS ALT2 TSL 5 BASIC5.32□□□□□ -1.56
BRCA1P38398 LINC01676-202ENST00000435253 1849 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
BRCA1P38398 PIGK-202ENST00000370812 4596 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
BRCA1P38398 AC005261.2-201ENST00000593427 4258 ntBASIC5.32□□□□□ -1.56
BRCA1P38398 LCA5L-203ENST00000380671 2080 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
BRCA1P38398 AC099329.2-203ENST00000471537 3605 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
BRCA1P38398 SCARNA15-201ENST00000607520 4325 ntBASIC5.31□□□□□ -1.56
BRCA1P38398 EXO1-208ENST00000518483 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC5.31□□□□□ -1.56
BRCA1P38398 AJ009632.2-208ENST00000635525 4123 ntTSL 5 BASIC5.31□□□□□ -1.56
BRCA1P38398 OR3A3-203ENST00000641141 3800 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
BRCA1P38398 AC083837.1-201ENST00000565297 2994 ntBASIC5.31□□□□□ -1.56
BRCA1P38398 ZNF616-204ENST00000600228 4335 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
BRCA1P38398 BMPR1APS1-201ENST00000403332 1598 ntBASIC5.31□□□□□ -1.56
BRCA1P38398 NECAB1-202ENST00000521366 2908 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
BRCA1P38398 ZNF611-201ENST00000319783 3153 ntAPPRIS P1 TSL 2 BASIC5.31□□□□□ -1.56
BRCA1P38398 OR11H4-201ENST00000315409 1082 ntBASIC5.31□□□□□ -1.56
BRCA1P38398 OR2M5-201ENST00000366476 939 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
BRCA1P38398 LINC01074-201ENST00000422527 555 ntTSL 3 BASIC5.31□□□□□ -1.56
BRCA1P38398 ARPP21-211ENST00000427542 568 ntTSL 4 BASIC5.31□□□□□ -1.56
BRCA1P38398 RPL21P91-201ENST00000429231 479 ntBASIC5.31□□□□□ -1.56
BRCA1P38398 RPEP2-201ENST00000432149 701 ntBASIC5.31□□□□□ -1.56
BRCA1P38398 TMX2P1-201ENST00000436507 708 ntBASIC5.31□□□□□ -1.56
BRCA1P38398 AC112715.1-201ENST00000445534 350 ntTSL 3 BASIC5.31□□□□□ -1.56
BRCA1P38398 AL139350.1-201ENST00000448825 408 ntTSL 3 BASIC5.31□□□□□ -1.56
BRCA1P38398 RHEBP2-201ENST00000450289 600 ntBASIC5.31□□□□□ -1.56
BRCA1P38398 AC010460.1-201ENST00000507087 466 ntBASIC5.31□□□□□ -1.56
BRCA1P38398 AC135050.5-201ENST00000576336 543 ntTSL 4 BASIC5.31□□□□□ -1.56
BRCA1P38398 OR11H4-203ENST00000641525 1082 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
BRCA1P38398 UNC5C-205ENST00000610318 9403 ntTSL 5 BASIC5.31□□□□□ -1.56
BRCA1P38398 C16orf87-202ENST00000394806 6640 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
BRCA1P38398 PCDH15-209ENST00000395433 6942 ntTSL 5 BASIC5.31□□□□□ -1.56
BRCA1P38398 CTAGE5-207ENST00000396165 3071 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
BRCA1P38398 DOPEY1-201ENST00000237163 7995 ntAPPRIS ALT1 TSL 5 BASIC5.31□□□□□ -1.56
BRCA1P38398 TTC37-201ENST00000358746 5706 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
BRCA1P38398 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
BRCA1P38398 CTNND1-212ENST00000525902 4984 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
BRCA1P38398 FAM46D-202ENST00000538312 3106 ntAPPRIS P1 TSL 2 BASIC5.3□□□□□ -1.56
BRCA1P38398 PATE1-201ENST00000305738 1527 ntAPPRIS P2 TSL 1 (best) BASIC5.3□□□□□ -1.56
BRCA1P38398 CDKN3-203ENST00000395577 637 ntTSL 5 BASIC5.3□□□□□ -1.56
BRCA1P38398 RPS20P14-201ENST00000412545 360 ntBASIC5.3□□□□□ -1.56
BRCA1P38398 TRGV5P-201ENST00000419915 354 ntBASIC5.3□□□□□ -1.56
BRCA1P38398 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC5.3□□□□□ -1.56
BRCA1P38398 AL353748.1-201ENST00000440753 474 ntBASIC5.3□□□□□ -1.56
BRCA1P38398 AL512326.1-201ENST00000443050 721 ntBASIC5.3□□□□□ -1.56
BRCA1P38398 SNRPCP3-201ENST00000474888 476 ntBASIC5.3□□□□□ -1.56
BRCA1P38398 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC5.3□□□□□ -1.56
BRCA1P38398 PWRN1-206ENST00000565512 433 ntTSL 2 BASIC5.3□□□□□ -1.56
BRCA1P38398 AC002094.2-201ENST00000577850 1121 ntTSL 5 BASIC5.3□□□□□ -1.56
BRCA1P38398 AF131215.7-201ENST00000602443 707 ntBASIC5.3□□□□□ -1.56
BRCA1P38398 CT45A9-201ENST00000604569 770 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
BRCA1P38398 LINC00343-210ENST00000608220 806 ntTSL 5 BASIC5.3□□□□□ -1.56
BRCA1P38398 CT45A8-201ENST00000611438 770 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
BRCA1P38398 CT45A6-201ENST00000612878 770 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
BRCA1P38398 RYR3-208ENST00000622037 15564 ntAPPRIS ALT2 TSL 5 BASIC5.3□□□□□ -1.56
BRCA1P38398 AC239868.2-201ENST00000564237 4527 ntBASIC5.3□□□□□ -1.56
BRCA1P38398 AC020656.2-201ENST00000613291 5309 ntBASIC5.3□□□□□ -1.56
BRCA1P38398 CHD8-202ENST00000430710 7420 ntAPPRIS P3 TSL 1 (best) BASIC5.3□□□□□ -1.56
BRCA1P38398 RAB18-209ENST00000621805 4894 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
BRCA1P38398 MCM10-202ENST00000378714 4547 ntAPPRIS ALT2 TSL 1 (best) BASIC5.3□□□□□ -1.56
BRCA1P38398 CASC19-206ENST00000641028 1430 ntBASIC5.3□□□□□ -1.56
BRCA1P38398 CHST9-203ENST00000618847 11388 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
BRCA1P38398 OR8H2-203ENST00000641311 3092 ntAPPRIS P2 BASIC5.3□□□□□ -1.56
BRCA1P38398 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC5.3□□□□□ -1.56
BRCA1P38398 PANK1-203ENST00000342512 2703 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
BRCA1P38398 OR13G1-201ENST00000359688 1046 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
BRCA1P38398 MIR491-201ENST00000384877 84 ntBASIC5.3□□□□□ -1.56
BRCA1P38398 AMMECR1LP1-201ENST00000415152 841 ntBASIC5.3□□□□□ -1.56
BRCA1P38398 MTCO1P54-201ENST00000430139 712 ntBASIC5.3□□□□□ -1.56
BRCA1P38398 AC009226.1-201ENST00000432413 539 ntTSL 3 BASIC5.3□□□□□ -1.56
BRCA1P38398 HMGN2P31-201ENST00000432430 273 ntBASIC5.3□□□□□ -1.56
BRCA1P38398 AC084149.1-201ENST00000437233 284 ntTSL 5 BASIC5.3□□□□□ -1.56
BRCA1P38398 LINC00704-202ENST00000443994 418 ntTSL 2 BASIC5.3□□□□□ -1.56
BRCA1P38398 LINC01307-202ENST00000444327 771 ntTSL 2 BASIC5.3□□□□□ -1.56
BRCA1P38398 NANOGP10-201ENST00000453325 895 ntBASIC5.3□□□□□ -1.56
BRCA1P38398 ANK3-207ENST00000460468 677 ntTSL 3 BASIC5.3□□□□□ -1.56
BRCA1P38398 RN7SL812P-201ENST00000493791 279 ntBASIC5.3□□□□□ -1.56
BRCA1P38398 AC119751.5-201ENST00000514077 770 ntBASIC5.3□□□□□ -1.56
BRCA1P38398 AC006349.1-201ENST00000555526 235 ntBASIC5.3□□□□□ -1.56
BRCA1P38398 DNAJC16-210ENST00000616884 5882 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
BRCA1P38398 TINAG-201ENST00000259782 1754 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
BRCA1P38398 PHLDB2-214ENST00000495180 4159 ntTSL 2 BASIC5.29□□□□□ -1.56
BRCA1P38398 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC5.29□□□□□ -1.56
BRCA1P38398 HEMK1-203ENST00000434410 17064 ntAPPRIS P1 TSL 2 BASIC5.29□□□□□ -1.56
BRCA1P38398 CACNA1E-204ENST00000367567 14757 ntAPPRIS ALT2 TSL 5 BASIC5.29□□□□□ -1.56
BRCA1P38398 CLEC7A-206ENST00000396484 1000 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 89 ms