Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 PEX2-201ENST00000357039 4317 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
LIG1P18858 IFIT1P1-201ENST00000400497 1449 ntBASIC6.88□□□□□ -1.31
LIG1P18858 TIMM9-202ENST00000395159 1336 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
LIG1P18858 S100A5-201ENST00000368717 506 ntAPPRIS P1 TSL 3 BASIC6.88□□□□□ -1.31
LIG1P18858 Y_RNA.390-201ENST00000383932 102 ntBASIC6.88□□□□□ -1.31
LIG1P18858 RNU6-114P-201ENST00000384704 105 ntBASIC6.88□□□□□ -1.31
LIG1P18858 RNU6-253P-201ENST00000384730 105 ntBASIC6.88□□□□□ -1.31
LIG1P18858 ATP5HP3-201ENST00000396994 486 ntBASIC6.88□□□□□ -1.31
LIG1P18858 AGR3-202ENST00000402239 563 ntTSL 2 BASIC6.88□□□□□ -1.31
LIG1P18858 RNA5SP198-201ENST00000410376 127 ntBASIC6.88□□□□□ -1.31
LIG1P18858 AC003092.2-201ENST00000411946 446 ntTSL 2 BASIC6.88□□□□□ -1.31
LIG1P18858 MTND3P23-201ENST00000431980 347 ntBASIC6.88□□□□□ -1.31
LIG1P18858 LINC01004-201ENST00000445184 686 ntTSL 5 BASIC6.88□□□□□ -1.31
LIG1P18858 RPL5P10-201ENST00000445207 894 ntBASIC6.88□□□□□ -1.31
LIG1P18858 EEF1E1P1-201ENST00000446998 430 ntBASIC6.88□□□□□ -1.31
LIG1P18858 RPL36AP33-201ENST00000450395 310 ntBASIC6.88□□□□□ -1.31
LIG1P18858 AC003071.1-201ENST00000451219 789 ntBASIC6.88□□□□□ -1.31
LIG1P18858 Z99127.1-201ENST00000452442 670 ntTSL 5 BASIC6.88□□□□□ -1.31
LIG1P18858 RNA5SP269-201ENST00000459032 137 ntBASIC6.88□□□□□ -1.31
LIG1P18858 ACA64.4-201ENST00000459070 127 ntBASIC6.88□□□□□ -1.31
LIG1P18858 RPL34P33-201ENST00000486062 334 ntBASIC6.88□□□□□ -1.31
LIG1P18858 RPL23AP40-201ENST00000487630 390 ntBASIC6.88□□□□□ -1.31
LIG1P18858 CCDC11P1-201ENST00000503137 1162 ntBASIC6.88□□□□□ -1.31
LIG1P18858 AC093281.2-201ENST00000510153 597 ntBASIC6.88□□□□□ -1.31
LIG1P18858 LINC02265-201ENST00000510551 957 ntTSL 2 BASIC6.88□□□□□ -1.31
LIG1P18858 KHDC1P1-201ENST00000511053 508 ntBASIC6.88□□□□□ -1.31
LIG1P18858 AC124293.1-201ENST00000530034 493 ntBASIC6.88□□□□□ -1.31
LIG1P18858 ALG9-IT1-201ENST00000531305 684 ntTSL 3 BASIC6.88□□□□□ -1.31
LIG1P18858 AP004247.1-201ENST00000531556 1289 ntBASIC6.88□□□□□ -1.31
LIG1P18858 AC130462.1-201ENST00000548144 549 ntTSL 5 BASIC6.88□□□□□ -1.31
LIG1P18858 AL049870.4-201ENST00000555741 486 ntBASIC6.88□□□□□ -1.31
LIG1P18858 AC040918.1-201ENST00000560056 632 ntTSL 2 BASIC6.88□□□□□ -1.31
LIG1P18858 MMP2-AS1-201ENST00000565307 593 ntTSL 4 BASIC6.88□□□□□ -1.31
LIG1P18858 AC103881.1-201ENST00000603476 538 ntBASIC6.88□□□□□ -1.31
LIG1P18858 AC124916.2-201ENST00000604416 224 ntBASIC6.88□□□□□ -1.31
LIG1P18858 AC068276.1-201ENST00000605793 379 ntBASIC6.88□□□□□ -1.31
LIG1P18858 AP001330.5-201ENST00000607176 411 ntBASIC6.88□□□□□ -1.31
LIG1P18858 STARD13-AS-239ENST00000609588 982 ntTSL 5 BASIC6.88□□□□□ -1.31
LIG1P18858 Z95327.3-201ENST00000610385 572 ntBASIC6.88□□□□□ -1.31
LIG1P18858 AC126175.1-201ENST00000617041 758 ntBASIC6.88□□□□□ -1.31
LIG1P18858 AC092794.2-201ENST00000620933 563 ntBASIC6.88□□□□□ -1.31
LIG1P18858 NRXN1-242ENST00000635519 3553 ntTSL 5 BASIC6.88□□□□□ -1.31
LIG1P18858 ARHGAP20-204ENST00000528829 5880 ntAPPRIS ALT2 TSL 1 (best) BASIC6.88□□□□□ -1.31
LIG1P18858 NOL4-202ENST00000535384 1853 ntTSL 2 BASIC6.87□□□□□ -1.31
LIG1P18858 XPNPEP3-201ENST00000357137 7988 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
LIG1P18858 ZNF658-201ENST00000612867 4160 ntAPPRIS P1 TSL 2 BASIC6.87□□□□□ -1.31
LIG1P18858 SLAMF6-202ENST00000368057 2712 ntAPPRIS ALT2 TSL 1 (best) BASIC6.87□□□□□ -1.31
LIG1P18858 CNBD1-202ENST00000518476 1594 ntAPPRIS P2 TSL 1 (best) BASIC6.87□□□□□ -1.31
LIG1P18858 FAM229B-201ENST00000368656 2543 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
LIG1P18858 ZNF415-203ENST00000500065 2496 ntAPPRIS ALT2 TSL 4 BASIC6.87□□□□□ -1.31
LIG1P18858 CASC19-206ENST00000641028 1430 ntBASIC6.87□□□□□ -1.31
LIG1P18858 CCR6-201ENST00000341935 4018 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
LIG1P18858 TRRAP-204ENST00000446306 12492 ntAPPRIS ALT2 TSL 5 BASIC6.87□□□□□ -1.31
LIG1P18858 RNU6-707P-201ENST00000364647 95 ntBASIC6.87□□□□□ -1.31
LIG1P18858 KLRC3-201ENST00000381903 798 ntAPPRIS P3 TSL 1 (best) BASIC6.87□□□□□ -1.31
LIG1P18858 MIR142-201ENST00000384835 87 ntBASIC6.87□□□□□ -1.31
LIG1P18858 RNASE9-202ENST00000404716 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC6.87□□□□□ -1.31
LIG1P18858 BTF3P7-201ENST00000407097 488 ntBASIC6.87□□□□□ -1.31
LIG1P18858 AL139805.1-201ENST00000407837 289 ntBASIC6.87□□□□□ -1.31
LIG1P18858 MTCO1P17-201ENST00000411522 491 ntBASIC6.87□□□□□ -1.31
LIG1P18858 NRBF2P2-201ENST00000413087 861 ntBASIC6.87□□□□□ -1.31
LIG1P18858 AC011752.1-203ENST00000417609 582 ntTSL 2 BASIC6.87□□□□□ -1.31
LIG1P18858 AC007435.1-201ENST00000421086 415 ntBASIC6.87□□□□□ -1.31
LIG1P18858 LINC02518-201ENST00000421737 524 ntTSL 3 BASIC6.87□□□□□ -1.31
LIG1P18858 GTF2IP23-201ENST00000423746 351 ntBASIC6.87□□□□□ -1.31
LIG1P18858 LINC01445-201ENST00000426205 812 ntTSL 3 BASIC6.87□□□□□ -1.31
LIG1P18858 CCNB1IP1P1-201ENST00000428976 839 ntBASIC6.87□□□□□ -1.31
LIG1P18858 AC008072.1-201ENST00000434254 824 ntBASIC6.87□□□□□ -1.31
LIG1P18858 AC010105.1-201ENST00000437290 385 ntTSL 5 BASIC6.87□□□□□ -1.31
LIG1P18858 AMYP1-201ENST00000440059 1023 ntBASIC6.87□□□□□ -1.31
LIG1P18858 AC064871.1-201ENST00000444562 427 ntTSL 3 BASIC6.87□□□□□ -1.31
LIG1P18858 MTCO2P25-201ENST00000447065 681 ntBASIC6.87□□□□□ -1.31
LIG1P18858 SDC4P-201ENST00000453285 601 ntBASIC6.87□□□□□ -1.31
LIG1P18858 AC117394.1-201ENST00000477323 567 ntBASIC6.87□□□□□ -1.31
LIG1P18858 MGAT4A-209ENST00000495056 683 ntTSL 2 BASIC6.87□□□□□ -1.31
LIG1P18858 AC079380.1-201ENST00000507844 619 ntTSL 3 BASIC6.87□□□□□ -1.31
LIG1P18858 LINC02512-201ENST00000509548 429 ntTSL 5 BASIC6.87□□□□□ -1.31
LIG1P18858 RN7SKP288-201ENST00000516227 268 ntBASIC6.87□□□□□ -1.31
LIG1P18858 LINC00534-201ENST00000517400 793 ntTSL 2 BASIC6.87□□□□□ -1.31
LIG1P18858 AC025881.1-201ENST00000518851 512 ntBASIC6.87□□□□□ -1.31
LIG1P18858 AC092709.1-201ENST00000521355 1045 ntBASIC6.87□□□□□ -1.31
LIG1P18858 TPT1-AS1-216ENST00000522845 403 ntTSL 3 BASIC6.87□□□□□ -1.31
LIG1P18858 OR5AK3P-201ENST00000527486 1297 ntBASIC6.87□□□□□ -1.31
LIG1P18858 EIF4A2P5-201ENST00000529914 499 ntBASIC6.87□□□□□ -1.31
LIG1P18858 YWHABP2-201ENST00000540201 713 ntBASIC6.87□□□□□ -1.31
LIG1P18858 A2MP1-201ENST00000543404 1201 ntTSL 5 BASIC6.87□□□□□ -1.31
LIG1P18858 AC068993.2-201ENST00000546563 395 ntTSL 5 BASIC6.87□□□□□ -1.31
LIG1P18858 AL445363.1-202ENST00000553697 545 ntTSL 3 BASIC6.87□□□□□ -1.31
LIG1P18858 RNASE9-205ENST00000553706 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC6.87□□□□□ -1.31
LIG1P18858 LINC02303-202ENST00000554711 531 ntTSL 3 BASIC6.87□□□□□ -1.31
LIG1P18858 AL121579.1-201ENST00000555129 305 ntBASIC6.87□□□□□ -1.31
LIG1P18858 AC044913.1-201ENST00000557200 430 ntBASIC6.87□□□□□ -1.31
LIG1P18858 AP005209.1-201ENST00000582531 928 ntTSL 5 BASIC6.87□□□□□ -1.31
LIG1P18858 AC018761.4-201ENST00000585742 272 ntTSL 3 BASIC6.87□□□□□ -1.31
LIG1P18858 AC119403.2-201ENST00000590960 598 ntBASIC6.87□□□□□ -1.31
LIG1P18858 AC008750.7-201ENST00000600765 559 ntTSL 4 BASIC6.87□□□□□ -1.31
LIG1P18858 TUG1_1.1-201ENST00000610654 145 ntBASIC6.87□□□□□ -1.31
LIG1P18858 AL136981.2-201ENST00000617319 734 ntBASIC6.87□□□□□ -1.31
LIG1P18858 AL356321.1-201ENST00000621360 228 ntBASIC6.87□□□□□ -1.31
LIG1P18858 SATB1-AS1-258ENST00000629405 664 ntTSL 5 BASIC6.87□□□□□ -1.31
Retrieved 100 of 98,524 protein–RNA pairs in 102.3 ms