Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 HUWE1-214ENST00000612484 14311 ntTSL 5 BASIC6.08□□□□□ -1.44
NUP88Q99567 TRAPPC13-201ENST00000231526 2715 ntAPPRIS ALT1 TSL 5 BASIC6.08□□□□□ -1.44
NUP88Q99567 MTERF1-202ENST00000406735 1639 ntAPPRIS ALT2 TSL 2 BASIC6.08□□□□□ -1.44
NUP88Q99567 LINC02203-203ENST00000625989 1600 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
NUP88Q99567 CCDC62-205ENST00000537566 3537 ntAPPRIS ALT2 TSL 2 BASIC6.08□□□□□ -1.44
NUP88Q99567 SNRPE-201ENST00000367208 355 ntTSL 2 BASIC6.08□□□□□ -1.44
NUP88Q99567 HTN3-201ENST00000381057 493 ntAPPRIS ALT2 TSL 2 BASIC6.08□□□□□ -1.44
NUP88Q99567 RNA5SP187-201ENST00000384400 119 ntBASIC6.08□□□□□ -1.44
NUP88Q99567 RNU6-906P-201ENST00000384700 70 ntBASIC6.08□□□□□ -1.44
NUP88Q99567 SSR1P2-201ENST00000415208 787 ntBASIC6.08□□□□□ -1.44
NUP88Q99567 HIGD1AP15-201ENST00000416198 280 ntBASIC6.08□□□□□ -1.44
NUP88Q99567 AL590727.1-201ENST00000418652 771 ntTSL 2 BASIC6.08□□□□□ -1.44
NUP88Q99567 MTCYBP15-201ENST00000433123 1127 ntBASIC6.08□□□□□ -1.44
NUP88Q99567 AL353689.2-201ENST00000433837 440 ntTSL 3 BASIC6.08□□□□□ -1.44
NUP88Q99567 AL359878.2-201ENST00000435531 407 ntTSL 3 BASIC6.08□□□□□ -1.44
NUP88Q99567 RPL7P29-201ENST00000437151 728 ntBASIC6.08□□□□□ -1.44
NUP88Q99567 RPL5P25-201ENST00000441148 775 ntBASIC6.08□□□□□ -1.44
NUP88Q99567 AL591719.1-201ENST00000444669 744 ntBASIC6.08□□□□□ -1.44
NUP88Q99567 Z80107.2-201ENST00000445127 392 ntBASIC6.08□□□□□ -1.44
NUP88Q99567 MRPL35P2-201ENST00000448009 511 ntBASIC6.08□□□□□ -1.44
NUP88Q99567 CBX1P2-201ENST00000453841 458 ntBASIC6.08□□□□□ -1.44
NUP88Q99567 EIF4A2P4-201ENST00000458691 1196 ntBASIC6.08□□□□□ -1.44
NUP88Q99567 LNCSRLR-201ENST00000490375 709 ntTSL 3 BASIC6.08□□□□□ -1.44
NUP88Q99567 AC113420.1-201ENST00000507903 571 ntBASIC6.08□□□□□ -1.44
NUP88Q99567 SPRY4-AS1-205ENST00000514303 152 ntTSL 3 BASIC6.08□□□□□ -1.44
NUP88Q99567 LINC01216-201ENST00000515728 824 ntTSL 5 BASIC6.08□□□□□ -1.44
NUP88Q99567 AC012400.1-201ENST00000518452 381 ntBASIC6.08□□□□□ -1.44
NUP88Q99567 LINC01609-202ENST00000522778 566 ntTSL 2 BASIC6.08□□□□□ -1.44
NUP88Q99567 AC018442.3-201ENST00000523025 183 ntBASIC6.08□□□□□ -1.44
NUP88Q99567 AP001636.3-202ENST00000525714 894 ntTSL 3 BASIC6.08□□□□□ -1.44
NUP88Q99567 OR5AZ1P-201ENST00000527448 943 ntBASIC6.08□□□□□ -1.44
NUP88Q99567 AC104938.1-202ENST00000563041 630 ntTSL 3 BASIC6.08□□□□□ -1.44
NUP88Q99567 PDCD6IPP2-207ENST00000566321 1069 ntBASIC6.08□□□□□ -1.44
NUP88Q99567 AC011840.5-201ENST00000582125 771 ntBASIC6.08□□□□□ -1.44
NUP88Q99567 AC068408.2-201ENST00000584566 439 ntTSL 3 BASIC6.08□□□□□ -1.44
NUP88Q99567 AC011447.4-201ENST00000587562 111 ntBASIC6.08□□□□□ -1.44
NUP88Q99567 AC093424.1-201ENST00000604999 338 ntBASIC6.08□□□□□ -1.44
NUP88Q99567 ZNF630-AS1-201ENST00000614448 397 ntTSL 3 BASIC6.08□□□□□ -1.44
NUP88Q99567 AC104985.3-201ENST00000623479 597 ntBASIC6.08□□□□□ -1.44
NUP88Q99567 AC006963.1-201ENST00000624003 1052 ntBASIC6.08□□□□□ -1.44
NUP88Q99567 AC097655.1-201ENST00000635075 318 ntBASIC6.08□□□□□ -1.44
NUP88Q99567 AL034549.2-201ENST00000618285 3373 ntBASIC6.08□□□□□ -1.44
NUP88Q99567 DTNA-231ENST00000598774 2418 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
NUP88Q99567 SLC1A3-201ENST00000265113 4170 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
NUP88Q99567 PRUNE2-207ENST00000428286 12437 ntTSL 5 BASIC6.08□□□□□ -1.44
NUP88Q99567 AC004158.1-201ENST00000564508 4319 ntBASIC6.08□□□□□ -1.44
NUP88Q99567 KLRC1-202ENST00000359151 1407 ntAPPRIS P4 TSL 1 (best) BASIC6.08□□□□□ -1.44
NUP88Q99567 CXADR-205ENST00000400169 1445 ntAPPRIS ALT2 TSL 5 BASIC6.08□□□□□ -1.44
NUP88Q99567 AL133268.1-201ENST00000405676 1401 ntBASIC6.08□□□□□ -1.44
NUP88Q99567 AC099786.3-201ENST00000565735 1410 ntBASIC6.08□□□□□ -1.44
NUP88Q99567 RCOR3-201ENST00000367005 4246 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
NUP88Q99567 NAP1L1-204ENST00000535020 1686 ntTSL 2 BASIC6.07□□□□□ -1.44
NUP88Q99567 ZNF678-201ENST00000343776 8556 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
NUP88Q99567 AC002525.1-201ENST00000624392 1622 ntBASIC6.07□□□□□ -1.44
NUP88Q99567 MAPK6PS2-201ENST00000379571 2060 ntBASIC6.07□□□□□ -1.44
NUP88Q99567 OR8A1-201ENST00000284287 1146 ntAPPRIS P1 BASIC6.07□□□□□ -1.44
NUP88Q99567 OR4P4-201ENST00000314612 939 ntAPPRIS P1 BASIC6.07□□□□□ -1.44
NUP88Q99567 OR6X1-201ENST00000327930 1058 ntAPPRIS P1 BASIC6.07□□□□□ -1.44
NUP88Q99567 OR5AC2-201ENST00000358642 930 ntAPPRIS P1 BASIC6.07□□□□□ -1.44
NUP88Q99567 RNA5SP90-201ENST00000364801 99 ntBASIC6.07□□□□□ -1.44
NUP88Q99567 RGS10-201ENST00000369101 738 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
NUP88Q99567 MIR1182-201ENST00000408363 97 ntBASIC6.07□□□□□ -1.44
NUP88Q99567 BTF3P8-201ENST00000414577 526 ntBASIC6.07□□□□□ -1.44
NUP88Q99567 TCEA1P4-201ENST00000415066 844 ntBASIC6.07□□□□□ -1.44
NUP88Q99567 AC092920.1-201ENST00000428516 678 ntTSL 5 BASIC6.07□□□□□ -1.44
NUP88Q99567 AL136231.1-201ENST00000429407 730 ntBASIC6.07□□□□□ -1.44
NUP88Q99567 GTF2IP3-201ENST00000433887 494 ntBASIC6.07□□□□□ -1.44
NUP88Q99567 AL139294.1-201ENST00000435739 512 ntTSL 2 BASIC6.07□□□□□ -1.44
NUP88Q99567 CLEC5A-202ENST00000438351 743 ntTSL 3 BASIC6.07□□□□□ -1.44
NUP88Q99567 LINC01802-201ENST00000438824 523 ntTSL 3 BASIC6.07□□□□□ -1.44
NUP88Q99567 MTND1P26-201ENST00000440488 538 ntBASIC6.07□□□□□ -1.44
NUP88Q99567 OR10R1P-201ENST00000441524 1141 ntBASIC6.07□□□□□ -1.44
NUP88Q99567 ARL5AP2-201ENST00000444698 533 ntBASIC6.07□□□□□ -1.44
NUP88Q99567 NOP56P2-201ENST00000447491 769 ntBASIC6.07□□□□□ -1.44
NUP88Q99567 LINC00903-201ENST00000497854 223 ntTSL 3 BASIC6.07□□□□□ -1.44
NUP88Q99567 AC021193.1-201ENST00000511607 420 ntBASIC6.07□□□□□ -1.44
NUP88Q99567 AC026719.2-201ENST00000515656 295 ntTSL 3 BASIC6.07□□□□□ -1.44
NUP88Q99567 RN7SKP287-201ENST00000516546 266 ntBASIC6.07□□□□□ -1.44
NUP88Q99567 IGHVII-44-2-201ENST00000517728 250 ntBASIC6.07□□□□□ -1.44
NUP88Q99567 AC027419.2-201ENST00000518439 497 ntTSL 3 BASIC6.07□□□□□ -1.44
NUP88Q99567 C14orf105-210ENST00000534126 1030 ntAPPRIS ALT1 TSL 1 (best) BASIC6.07□□□□□ -1.44
NUP88Q99567 AC007406.1-201ENST00000544067 315 ntTSL 3 BASIC6.07□□□□□ -1.44
NUP88Q99567 PPFIA2-AS1-210ENST00000553197 875 ntTSL 5 BASIC6.07□□□□□ -1.44
NUP88Q99567 AL161757.2-201ENST00000553800 421 ntTSL 3 BASIC6.07□□□□□ -1.44
NUP88Q99567 AL358913.1-201ENST00000554342 121 ntBASIC6.07□□□□□ -1.44
NUP88Q99567 AC055855.2-201ENST00000565993 500 ntTSL 2 BASIC6.07□□□□□ -1.44
NUP88Q99567 AC095057.3-201ENST00000567102 1157 ntBASIC6.07□□□□□ -1.44
NUP88Q99567 AC015878.1-201ENST00000584611 679 ntTSL 3 BASIC6.07□□□□□ -1.44
NUP88Q99567 AC125494.3-201ENST00000602759 455 ntBASIC6.07□□□□□ -1.44
NUP88Q99567 AC008814.1-201ENST00000603797 406 ntBASIC6.07□□□□□ -1.44
NUP88Q99567 AL162431.4-201ENST00000604674 411 ntBASIC6.07□□□□□ -1.44
NUP88Q99567 AC093799.2-201ENST00000610062 578 ntBASIC6.07□□□□□ -1.44
NUP88Q99567 AL035461.2-201ENST00000619201 524 ntBASIC6.07□□□□□ -1.44
NUP88Q99567 AC024595.1-201ENST00000623088 387 ntBASIC6.07□□□□□ -1.44
NUP88Q99567 AC087632.1-216ENST00000625619 487 ntAPPRIS P1 TSL 3 BASIC6.07□□□□□ -1.44
NUP88Q99567 CDKL3-210ENST00000523832 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC6.07□□□□□ -1.44
NUP88Q99567 ARHGAP5-210ENST00000556611 4824 ntAPPRIS ALT1 TSL 5 BASIC6.07□□□□□ -1.44
NUP88Q99567 PTK2-213ENST00000519465 3279 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
NUP88Q99567 ZNF83-202ENST00000536937 2726 ntAPPRIS P1 TSL 2 BASIC6.07□□□□□ -1.44
NUP88Q99567 POU1F1-202ENST00000350375 1491 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 95.3 ms