Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 CPS1-204ENST00000451903 4770 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
UBE3DQ7Z6J8 NLRC4-202ENST00000360906 3359 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
UBE3DQ7Z6J8 ANKRD46-201ENST00000335659 2649 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
UBE3DQ7Z6J8 ZNF566-202ENST00000424129 2644 ntAPPRIS P3 TSL 2 BASIC6.12□□□□□ -1.43
UBE3DQ7Z6J8 ZNF138-204ENST00000437743 2574 ntAPPRIS ALT2 TSL 1 (best) BASIC6.12□□□□□ -1.43
UBE3DQ7Z6J8 TMC5-205ENST00000542583 4872 ntAPPRIS ALT2 TSL 2 BASIC6.11□□□□□ -1.43
UBE3DQ7Z6J8 NIT2-201ENST00000394140 7289 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
UBE3DQ7Z6J8 AQR-201ENST00000156471 9694 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
UBE3DQ7Z6J8 PCDH18-203ENST00000507846 4625 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
UBE3DQ7Z6J8 PEAK1-202ENST00000558305 4644 ntTSL 4 BASIC6.11□□□□□ -1.43
UBE3DQ7Z6J8 LINC01606-203ENST00000519160 2292 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
UBE3DQ7Z6J8 TMC7-202ENST00000421369 4499 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
UBE3DQ7Z6J8 DNM1L-205ENST00000414834 4211 ntTSL 2 BASIC6.11□□□□□ -1.43
UBE3DQ7Z6J8 AC107021.2-201ENST00000567714 2095 ntBASIC6.11□□□□□ -1.43
UBE3DQ7Z6J8 DOCK9-216ENST00000627024 4096 ntTSL 2 BASIC6.11□□□□□ -1.43
UBE3DQ7Z6J8 DNAJC16-202ENST00000375847 6069 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
UBE3DQ7Z6J8 SPAG9-209ENST00000510283 4949 ntTSL 2 BASIC6.11□□□□□ -1.43
UBE3DQ7Z6J8 MTERF1-202ENST00000406735 1639 ntAPPRIS ALT2 TSL 2 BASIC6.11□□□□□ -1.43
UBE3DQ7Z6J8 LGI1-219ENST00000636155 1618 ntTSL 5 BASIC6.11□□□□□ -1.43
UBE3DQ7Z6J8 GPR155-206ENST00000614352 7321 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
UBE3DQ7Z6J8 RBM44-206ENST00000611254 1427 ntTSL 2 BASIC6.11□□□□□ -1.43
UBE3DQ7Z6J8 LZTFL1-201ENST00000296135 4073 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
UBE3DQ7Z6J8 BPIFA2-201ENST00000253362 1122 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
UBE3DQ7Z6J8 BPIFA2-202ENST00000354932 1047 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
UBE3DQ7Z6J8 OR1A2-201ENST00000381951 930 ntAPPRIS P1 BASIC6.11□□□□□ -1.43
UBE3DQ7Z6J8 SAMD13-206ENST00000394834 785 ntAPPRIS P1 TSL 2 BASIC6.11□□□□□ -1.43
UBE3DQ7Z6J8 AL589647.1-201ENST00000402485 466 ntBASIC6.11□□□□□ -1.43
UBE3DQ7Z6J8 AL034374.1-201ENST00000406329 351 ntBASIC6.11□□□□□ -1.43
UBE3DQ7Z6J8 DNAJA1P4-201ENST00000406473 1166 ntBASIC6.11□□□□□ -1.43
UBE3DQ7Z6J8 U3.43-201ENST00000410734 213 ntBASIC6.11□□□□□ -1.43
UBE3DQ7Z6J8 BOLA3P4-201ENST00000418151 400 ntBASIC6.11□□□□□ -1.43
UBE3DQ7Z6J8 BTF3L4P3-201ENST00000418879 476 ntBASIC6.11□□□□□ -1.43
UBE3DQ7Z6J8 FABP7P1-201ENST00000424004 391 ntBASIC6.11□□□□□ -1.43
UBE3DQ7Z6J8 AC127526.2-201ENST00000426436 775 ntBASIC6.11□□□□□ -1.43
UBE3DQ7Z6J8 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC6.11□□□□□ -1.43
UBE3DQ7Z6J8 TCF7L1-IT1-201ENST00000433581 458 ntTSL 3 BASIC6.11□□□□□ -1.43
UBE3DQ7Z6J8 UBE2V1P5-201ENST00000440070 405 ntBASIC6.11□□□□□ -1.43
UBE3DQ7Z6J8 AC064862.5-201ENST00000440618 334 ntBASIC6.11□□□□□ -1.43
UBE3DQ7Z6J8 AC002383.1-201ENST00000448260 671 ntTSL 5 BASIC6.11□□□□□ -1.43
UBE3DQ7Z6J8 RAD23BP3-201ENST00000454157 1152 ntBASIC6.11□□□□□ -1.43
UBE3DQ7Z6J8 AC239798.3-201ENST00000454459 408 ntBASIC6.11□□□□□ -1.43
UBE3DQ7Z6J8 AC006947.1-201ENST00000457168 484 ntTSL 3 BASIC6.11□□□□□ -1.43
UBE3DQ7Z6J8 AC087312.1-201ENST00000471411 480 ntBASIC6.11□□□□□ -1.43
UBE3DQ7Z6J8 AL035404.1-201ENST00000497982 568 ntBASIC6.11□□□□□ -1.43
UBE3DQ7Z6J8 AC114786.4-201ENST00000508771 728 ntBASIC6.11□□□□□ -1.43
UBE3DQ7Z6J8 MGC32805-204ENST00000509993 783 ntTSL 2 BASIC6.11□□□□□ -1.43
UBE3DQ7Z6J8 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC6.11□□□□□ -1.43
UBE3DQ7Z6J8 AC105914.1-201ENST00000511798 226 ntBASIC6.11□□□□□ -1.43
UBE3DQ7Z6J8 AC093599.1-201ENST00000515232 562 ntTSL 4 BASIC6.11□□□□□ -1.43
UBE3DQ7Z6J8 AC100802.1-201ENST00000519197 1026 ntTSL 3 BASIC6.11□□□□□ -1.43
UBE3DQ7Z6J8 AC018410.2-201ENST00000540410 610 ntTSL 5 BASIC6.11□□□□□ -1.43
UBE3DQ7Z6J8 AC090607.4-201ENST00000558192 369 ntTSL 3 BASIC6.11□□□□□ -1.43
UBE3DQ7Z6J8 AC103740.1-202ENST00000558404 542 ntTSL 4 BASIC6.11□□□□□ -1.43
UBE3DQ7Z6J8 MIR3157-201ENST00000578688 85 ntBASIC6.11□□□□□ -1.43
UBE3DQ7Z6J8 AC090506.1-201ENST00000583089 572 ntTSL 4 BASIC6.11□□□□□ -1.43
UBE3DQ7Z6J8 AC022031.2-203ENST00000587346 565 ntTSL 4 BASIC6.11□□□□□ -1.43
UBE3DQ7Z6J8 NRBF2P1-201ENST00000587407 859 ntBASIC6.11□□□□□ -1.43
UBE3DQ7Z6J8 AC135012.2-201ENST00000600234 479 ntTSL 2 BASIC6.11□□□□□ -1.43
UBE3DQ7Z6J8 AC091488.1-201ENST00000604239 660 ntBASIC6.11□□□□□ -1.43
UBE3DQ7Z6J8 AL589743.6-201ENST00000611025 117 ntBASIC6.11□□□□□ -1.43
UBE3DQ7Z6J8 VPS8-228ENST00000628962 207 ntTSL 5 BASIC6.11□□□□□ -1.43
UBE3DQ7Z6J8 Z98257.1-202ENST00000431027 2493 ntTSL 5 BASIC6.11□□□□□ -1.43
UBE3DQ7Z6J8 B3GALT5-203ENST00000380620 13170 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
UBE3DQ7Z6J8 STXBP4-202ENST00000398391 2160 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
UBE3DQ7Z6J8 ZNF542P-202ENST00000467807 3209 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
UBE3DQ7Z6J8 PLCZ1-201ENST00000266505 2148 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
UBE3DQ7Z6J8 LINC01415-201ENST00000587320 4071 ntTSL 2 BASIC6.11□□□□□ -1.43
UBE3DQ7Z6J8 CLRN1-AS1-201ENST00000465576 2045 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
UBE3DQ7Z6J8 NUP107-211ENST00000539906 3004 ntTSL 2 BASIC6.11□□□□□ -1.43
UBE3DQ7Z6J8 CC2D2B-202ENST00000410012 1792 ntAPPRIS ALT2 TSL 2 BASIC6.11□□□□□ -1.43
UBE3DQ7Z6J8 AC005674.2-201ENST00000561486 3510 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
UBE3DQ7Z6J8 LEPR-205ENST00000371060 5135 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
UBE3DQ7Z6J8 LINC01378-201ENST00000422145 2516 ntTSL 3 BASIC6.1□□□□□ -1.43
UBE3DQ7Z6J8 FASTKD2-203ENST00000403094 2344 ntAPPRIS P1 TSL 5 BASIC6.1□□□□□ -1.43
UBE3DQ7Z6J8 CHRM5-201ENST00000383263 5410 ntAPPRIS P1 TSL 2 BASIC6.1□□□□□ -1.43
UBE3DQ7Z6J8 ARHGAP32-203ENST00000524655 8194 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
UBE3DQ7Z6J8 AC217777.1-201ENST00000570034 1471 ntBASIC6.1□□□□□ -1.43
UBE3DQ7Z6J8 LDAH-212ENST00000619656 3663 ntTSL 2 BASIC6.1□□□□□ -1.43
UBE3DQ7Z6J8 MIR3681HG-201ENST00000412294 2183 ntTSL 2 BASIC6.1□□□□□ -1.43
UBE3DQ7Z6J8 TMPRSS11F-201ENST00000356291 2088 ntAPPRIS P1 TSL 2 BASIC6.1□□□□□ -1.43
UBE3DQ7Z6J8 RBM22-202ENST00000447771 1386 ntTSL 2 BASIC6.1□□□□□ -1.43
UBE3DQ7Z6J8 PUM1-206ENST00000426105 4043 ntAPPRIS ALT1 TSL 1 (best) BASIC6.1□□□□□ -1.43
UBE3DQ7Z6J8 TATDN1-201ENST00000276692 1018 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
UBE3DQ7Z6J8 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
UBE3DQ7Z6J8 RNU6-1090P-201ENST00000364065 94 ntBASIC6.1□□□□□ -1.43
UBE3DQ7Z6J8 Y_RNA.279-201ENST00000364763 95 ntBASIC6.1□□□□□ -1.43
UBE3DQ7Z6J8 U8.14-201ENST00000390843 143 ntBASIC6.1□□□□□ -1.43
UBE3DQ7Z6J8 AL356776.1-201ENST00000406574 447 ntBASIC6.1□□□□□ -1.43
UBE3DQ7Z6J8 AL139128.1-201ENST00000413921 941 ntBASIC6.1□□□□□ -1.43
UBE3DQ7Z6J8 AP000432.1-201ENST00000416641 516 ntTSL 3 BASIC6.1□□□□□ -1.43
UBE3DQ7Z6J8 ZNF90P2-204ENST00000419323 1075 ntBASIC6.1□□□□□ -1.43
UBE3DQ7Z6J8 SDCBPP3-201ENST00000419629 891 ntBASIC6.1□□□□□ -1.43
UBE3DQ7Z6J8 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC6.1□□□□□ -1.43
UBE3DQ7Z6J8 AL159174.1-202ENST00000425588 442 ntTSL 3 BASIC6.1□□□□□ -1.43
UBE3DQ7Z6J8 NPM1P22-201ENST00000427761 952 ntBASIC6.1□□□□□ -1.43
UBE3DQ7Z6J8 AC109583.1-201ENST00000432156 268 ntBASIC6.1□□□□□ -1.43
UBE3DQ7Z6J8 AC018865.1-201ENST00000433507 578 ntTSL 4 BASIC6.1□□□□□ -1.43
UBE3DQ7Z6J8 AL645939.3-201ENST00000435408 225 ntBASIC6.1□□□□□ -1.43
UBE3DQ7Z6J8 RPL23AP19-201ENST00000436229 369 ntBASIC6.1□□□□□ -1.43
UBE3DQ7Z6J8 AL451074.3-201ENST00000437709 472 ntBASIC6.1□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 143.4 ms