Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 GNG2-212ENST00000556752 3424 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
USP39Q53GS9 RYR3-212ENST00000634891 15591 ntAPPRIS P3 TSL 1 (best) BASIC5.76□□□□□ -1.49
USP39Q53GS9 MMAA-205ENST00000541599 1437 ntTSL 5 BASIC5.76□□□□□ -1.49
USP39Q53GS9 MTND5P24-201ENST00000438892 1767 ntBASIC5.76□□□□□ -1.49
USP39Q53GS9 HEPHL1-201ENST00000315765 5345 ntAPPRIS P1 TSL 5 BASIC5.76□□□□□ -1.49
USP39Q53GS9 DROSHA-212ENST00000511367 5305 ntAPPRIS P4 TSL 1 (best) BASIC5.76□□□□□ -1.49
USP39Q53GS9 UGT2A1-206ENST00000514019 2376 ntTSL 2 BASIC5.76□□□□□ -1.49
USP39Q53GS9 IL21-201ENST00000264497 629 ntAPPRIS P3 TSL 1 (best) BASIC5.76□□□□□ -1.49
USP39Q53GS9 FAM133CP-201ENST00000332869 704 ntBASIC5.76□□□□□ -1.49
USP39Q53GS9 AL159987.1-201ENST00000347911 293 ntBASIC5.76□□□□□ -1.49
USP39Q53GS9 RNU6-553P-201ENST00000364047 96 ntBASIC5.76□□□□□ -1.49
USP39Q53GS9 RNU4-51P-201ENST00000364206 140 ntBASIC5.76□□□□□ -1.49
USP39Q53GS9 GEN1-202ENST00000381254 6367 ntAPPRIS P1 TSL 5 BASIC5.76□□□□□ -1.49
USP39Q53GS9 AL645927.1-201ENST00000396783 406 ntBASIC5.76□□□□□ -1.49
USP39Q53GS9 ST13P16-201ENST00000401760 781 ntBASIC5.76□□□□□ -1.49
USP39Q53GS9 RNASE9-202ENST00000404716 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC5.76□□□□□ -1.49
USP39Q53GS9 TATDN1P1-201ENST00000414123 891 ntBASIC5.76□□□□□ -1.49
USP39Q53GS9 AL078590.2-202ENST00000422736 568 ntTSL 3 BASIC5.76□□□□□ -1.49
USP39Q53GS9 AL359853.3-201ENST00000423879 544 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
USP39Q53GS9 MRPS10P2-201ENST00000431226 381 ntBASIC5.76□□□□□ -1.49
USP39Q53GS9 KRT8P51-201ENST00000438938 274 ntBASIC5.76□□□□□ -1.49
USP39Q53GS9 ARAFP2-201ENST00000440565 559 ntBASIC5.76□□□□□ -1.49
USP39Q53GS9 AC245517.2-201ENST00000442890 346 ntBASIC5.76□□□□□ -1.49
USP39Q53GS9 AP003774.4-201ENST00000447028 672 ntTSL 2 BASIC5.76□□□□□ -1.49
USP39Q53GS9 CD200R1L-202ENST00000448932 750 ntAPPRIS ALT2 TSL 5 BASIC5.76□□□□□ -1.49
USP39Q53GS9 RPL31P20-201ENST00000449593 360 ntBASIC5.76□□□□□ -1.49
USP39Q53GS9 LINC01878-202ENST00000453965 405 ntTSL 3 BASIC5.76□□□□□ -1.49
USP39Q53GS9 MTCYBP1-201ENST00000454315 1119 ntBASIC5.76□□□□□ -1.49
USP39Q53GS9 RPL7P40-201ENST00000481703 745 ntBASIC5.76□□□□□ -1.49
USP39Q53GS9 AC079203.1-201ENST00000487972 404 ntBASIC5.76□□□□□ -1.49
USP39Q53GS9 SLC9A9-AS2-201ENST00000490153 327 ntTSL 5 BASIC5.76□□□□□ -1.49
USP39Q53GS9 KLHL6-AS1-201ENST00000491676 503 ntTSL 2 BASIC5.76□□□□□ -1.49
USP39Q53GS9 AC093890.1-201ENST00000502554 540 ntBASIC5.76□□□□□ -1.49
USP39Q53GS9 LINC02462-201ENST00000503009 430 ntTSL 5 BASIC5.76□□□□□ -1.49
USP39Q53GS9 AC008448.1-201ENST00000505109 584 ntTSL 5 BASIC5.76□□□□□ -1.49
USP39Q53GS9 AC074255.1-201ENST00000511259 501 ntBASIC5.76□□□□□ -1.49
USP39Q53GS9 RNU2-30P-201ENST00000516209 141 ntBASIC5.76□□□□□ -1.49
USP39Q53GS9 RN7SKP288-201ENST00000516227 268 ntBASIC5.76□□□□□ -1.49
USP39Q53GS9 snoU109.5-201ENST00000516231 132 ntBASIC5.76□□□□□ -1.49
USP39Q53GS9 NSMCE2-202ENST00000517315 996 ntTSL 3 BASIC5.76□□□□□ -1.49
USP39Q53GS9 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC5.76□□□□□ -1.49
USP39Q53GS9 AC097173.2-201ENST00000518701 474 ntTSL 3 BASIC5.76□□□□□ -1.49
USP39Q53GS9 AF117829.1-208ENST00000521996 915 ntTSL 3 BASIC5.76□□□□□ -1.49
USP39Q53GS9 AC109635.3-201ENST00000529536 185 ntBASIC5.76□□□□□ -1.49
USP39Q53GS9 HMGN2P6-201ENST00000551091 273 ntBASIC5.76□□□□□ -1.49
USP39Q53GS9 RNASE9-205ENST00000553706 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC5.76□□□□□ -1.49
USP39Q53GS9 LINC02319-201ENST00000555852 349 ntTSL 3 BASIC5.76□□□□□ -1.49
USP39Q53GS9 AC020704.1-201ENST00000559394 454 ntTSL 3 BASIC5.76□□□□□ -1.49
USP39Q53GS9 LINC02170-201ENST00000561519 555 ntTSL 4 BASIC5.76□□□□□ -1.49
USP39Q53GS9 LINC01633-201ENST00000566476 1091 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
USP39Q53GS9 MRPS21P7-201ENST00000566937 238 ntBASIC5.76□□□□□ -1.49
USP39Q53GS9 AC113418.1-201ENST00000569928 517 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
USP39Q53GS9 EIF1P4-201ENST00000572664 335 ntBASIC5.76□□□□□ -1.49
USP39Q53GS9 SLC14A2-AS1-201ENST00000585759 494 ntTSL 3 BASIC5.76□□□□□ -1.49
USP39Q53GS9 LINC01835-202ENST00000589345 450 ntTSL 3 BASIC5.76□□□□□ -1.49
USP39Q53GS9 GALNT1-205ENST00000591081 1120 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
USP39Q53GS9 SATB1-AS1-207ENST00000593741 955 ntTSL 5 BASIC5.76□□□□□ -1.49
USP39Q53GS9 VN1R90P-201ENST00000595717 726 ntBASIC5.76□□□□□ -1.49
USP39Q53GS9 SATB1-AS1-222ENST00000600177 751 ntTSL 5 BASIC5.76□□□□□ -1.49
USP39Q53GS9 AL020997.3-201ENST00000602843 359 ntBASIC5.76□□□□□ -1.49
USP39Q53GS9 AL136363.2-201ENST00000604173 851 ntBASIC5.76□□□□□ -1.49
USP39Q53GS9 AC092653.1-201ENST00000608509 531 ntBASIC5.76□□□□□ -1.49
USP39Q53GS9 AC093388.1-201ENST00000609166 430 ntBASIC5.76□□□□□ -1.49
USP39Q53GS9 AC122133.1-201ENST00000613964 233 ntBASIC5.76□□□□□ -1.49
USP39Q53GS9 AC090607.5-201ENST00000615692 224 ntBASIC5.76□□□□□ -1.49
USP39Q53GS9 AC007494.3-201ENST00000624660 743 ntBASIC5.76□□□□□ -1.49
USP39Q53GS9 AL008636.1-201ENST00000625038 1018 ntBASIC5.76□□□□□ -1.49
USP39Q53GS9 CRNDE-213ENST00000635991 546 ntTSL 5 BASIC5.76□□□□□ -1.49
USP39Q53GS9 AC232271.1-201ENST00000602455 2715 ntBASIC5.76□□□□□ -1.49
USP39Q53GS9 IL1R1-202ENST00000409329 1862 ntTSL 5 BASIC5.76□□□□□ -1.49
USP39Q53GS9 IFIT1B-201ENST00000371809 1972 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
USP39Q53GS9 WDR72-203ENST00000557913 5900 ntAPPRIS ALT1 TSL 5 BASIC5.76□□□□□ -1.49
USP39Q53GS9 AC012020.1-201ENST00000624541 1728 ntBASIC5.76□□□□□ -1.49
USP39Q53GS9 GPR18-202ENST00000397470 1468 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
USP39Q53GS9 BICRAL-201ENST00000314073 6530 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
USP39Q53GS9 CFL2-201ENST00000298159 6747 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
USP39Q53GS9 ZBTB38-202ENST00000441582 3662 ntAPPRIS P1 TSL 2 BASIC5.76□□□□□ -1.49
USP39Q53GS9 ZNF343-207ENST00000612935 3675 ntAPPRIS ALT2 TSL 5 BASIC5.76□□□□□ -1.49
USP39Q53GS9 AL034546.1-201ENST00000623740 3693 ntBASIC5.76□□□□□ -1.49
USP39Q53GS9 PTPRD-202ENST00000356435 9472 ntAPPRIS P1 TSL 5 BASIC5.76□□□□□ -1.49
USP39Q53GS9 AC130304.1-201ENST00000622942 2385 ntBASIC5.75□□□□□ -1.49
USP39Q53GS9 INO80D-201ENST00000403263 14136 ntAPPRIS P1 TSL 5 BASIC5.75□□□□□ -1.49
USP39Q53GS9 ZNF224-201ENST00000336976 3980 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
USP39Q53GS9 ANKRD20A17P-201ENST00000511745 1330 ntBASIC5.75□□□□□ -1.49
USP39Q53GS9 BACH1-201ENST00000286800 5669 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
USP39Q53GS9 ANKRD36BP1-202ENST00000604892 1417 ntBASIC5.75□□□□□ -1.49
USP39Q53GS9 NRCAM-210ENST00000425651 3915 ntAPPRIS ALT2 TSL 1 (best) BASIC5.75□□□□□ -1.49
USP39Q53GS9 AMY1B-201ENST00000330330 1862 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
USP39Q53GS9 LINC01524-201ENST00000428009 4390 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
USP39Q53GS9 MAPK10-370ENST00000641943 4117 ntAPPRIS P2 BASIC5.75□□□□□ -1.49
USP39Q53GS9 DCDC1-207ENST00000452803 1706 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
USP39Q53GS9 OR6X1-201ENST00000327930 1058 ntAPPRIS P1 BASIC5.75□□□□□ -1.49
USP39Q53GS9 RNY3P14-201ENST00000384309 102 ntBASIC5.75□□□□□ -1.49
USP39Q53GS9 RNU6-1005P-201ENST00000384519 107 ntBASIC5.75□□□□□ -1.49
USP39Q53GS9 RNU6ATAC25P-201ENST00000408798 117 ntBASIC5.75□□□□□ -1.49
USP39Q53GS9 FCF1P9-201ENST00000412546 282 ntBASIC5.75□□□□□ -1.49
USP39Q53GS9 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC5.75□□□□□ -1.49
USP39Q53GS9 RPL23AP27-201ENST00000415161 451 ntBASIC5.75□□□□□ -1.49
USP39Q53GS9 AC004882.2-201ENST00000420180 244 ntTSL 5 BASIC5.75□□□□□ -1.49
USP39Q53GS9 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC5.75□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 117.2 ms