Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 SPANXN4-202ENST00000446864 431 ntAPPRIS P2 TSL 1 (best) BASIC4.4□□□□□ -1.71
HOXA1P49639 AC090804.1-201ENST00000448870 490 ntBASIC4.4□□□□□ -1.71
HOXA1P49639 OR51B8P-201ENST00000449892 769 ntBASIC4.4□□□□□ -1.71
HOXA1P49639 LINC00692-201ENST00000451284 932 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
HOXA1P49639 AL121877.1-201ENST00000453704 622 ntBASIC4.4□□□□□ -1.71
HOXA1P49639 OFD1P7Y-201ENST00000454643 1155 ntBASIC4.4□□□□□ -1.71
HOXA1P49639 CCNB1IP1P3-201ENST00000454702 829 ntBASIC4.4□□□□□ -1.71
HOXA1P49639 AC093166.2-201ENST00000455969 1017 ntBASIC4.4□□□□□ -1.71
HOXA1P49639 SCARNA10-201ENST00000459255 330 ntBASIC4.4□□□□□ -1.71
HOXA1P49639 RNU6-599P-201ENST00000459383 107 ntBASIC4.4□□□□□ -1.71
HOXA1P49639 RNU6-1193P-201ENST00000459461 107 ntBASIC4.4□□□□□ -1.71
HOXA1P49639 AC010469.1-201ENST00000463864 576 ntBASIC4.4□□□□□ -1.71
HOXA1P49639 AC008517.1-201ENST00000502383 585 ntTSL 4 BASIC4.4□□□□□ -1.71
HOXA1P49639 IGBP1P4-201ENST00000503202 879 ntBASIC4.4□□□□□ -1.71
HOXA1P49639 VWA8P1-201ENST00000510889 176 ntBASIC4.4□□□□□ -1.71
HOXA1P49639 AC108120.2-201ENST00000512973 294 ntBASIC4.4□□□□□ -1.71
HOXA1P49639 OR5H7P-201ENST00000514084 930 ntBASIC4.4□□□□□ -1.71
HOXA1P49639 Y_RNA.667-201ENST00000516212 107 ntBASIC4.4□□□□□ -1.71
HOXA1P49639 RNU6-1028P-201ENST00000517164 93 ntBASIC4.4□□□□□ -1.71
HOXA1P49639 MYL12AP1-201ENST00000518490 515 ntBASIC4.4□□□□□ -1.71
HOXA1P49639 AP001267.3-202ENST00000525992 448 ntTSL 3 BASIC4.4□□□□□ -1.71
HOXA1P49639 AL163973.2-201ENST00000548096 288 ntTSL 3 BASIC4.4□□□□□ -1.71
HOXA1P49639 AL445363.1-202ENST00000553697 545 ntTSL 3 BASIC4.4□□□□□ -1.71
HOXA1P49639 AC068722.1-202ENST00000559600 655 ntTSL 3 BASIC4.4□□□□□ -1.71
HOXA1P49639 AL109741.3-201ENST00000561748 592 ntBASIC4.4□□□□□ -1.71
HOXA1P49639 AC092140.1-201ENST00000563090 549 ntTSL 3 BASIC4.4□□□□□ -1.71
HOXA1P49639 AC022872.1-201ENST00000568391 781 ntTSL 2 BASIC4.4□□□□□ -1.71
HOXA1P49639 AC090403.1-204ENST00000582893 572 ntTSL 4 BASIC4.4□□□□□ -1.71
HOXA1P49639 AC004448.4-204ENST00000585389 743 ntTSL 5 BASIC4.4□□□□□ -1.71
HOXA1P49639 GMFG-202ENST00000594700 397 ntTSL 2 BASIC4.4□□□□□ -1.71
HOXA1P49639 AC092316.1-201ENST00000598703 297 ntTSL 5 BASIC4.4□□□□□ -1.71
HOXA1P49639 CDC42EP3P1-201ENST00000601004 764 ntBASIC4.4□□□□□ -1.71
HOXA1P49639 AL589935.1-201ENST00000602418 488 ntTSL 4 BASIC4.4□□□□□ -1.71
HOXA1P49639 AL049844.2-201ENST00000604280 628 ntBASIC4.4□□□□□ -1.71
HOXA1P49639 ELOCP35-201ENST00000604289 336 ntBASIC4.4□□□□□ -1.71
HOXA1P49639 LINC02112-204ENST00000606222 429 ntTSL 5 BASIC4.4□□□□□ -1.71
HOXA1P49639 CCL4-202ENST00000615863 904 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
HOXA1P49639 OR8H2-202ENST00000618136 1038 ntAPPRIS ALT1 BASIC4.4□□□□□ -1.71
HOXA1P49639 RNU6-368P-201ENST00000620928 107 ntBASIC4.4□□□□□ -1.71
HOXA1P49639 RNU6-538P-201ENST00000622329 107 ntBASIC4.4□□□□□ -1.71
HOXA1P49639 LINC00969-332ENST00000630874 738 ntTSL 5 BASIC4.4□□□□□ -1.71
HOXA1P49639 NXF4-202ENST00000416098 1465 ntBASIC4.4□□□□□ -1.71
HOXA1P49639 FGF12-204ENST00000445105 5406 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
HOXA1P49639 DCDC1-211ENST00000597505 5352 ntAPPRIS ALT2 TSL 5 BASIC4.4□□□□□ -1.71
HOXA1P49639 SUCLA2P2-201ENST00000417269 1309 ntBASIC4.4□□□□□ -1.71
HOXA1P49639 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
HOXA1P49639 OR56A1-202ENST00000641423 6096 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
HOXA1P49639 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC4.4□□□□□ -1.71
HOXA1P49639 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC4.4□□□□□ -1.71
HOXA1P49639 AC003973.3-201ENST00000624863 2822 ntBASIC4.4□□□□□ -1.71
HOXA1P49639 TCN1-201ENST00000257264 1582 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
HOXA1P49639 AL445487.1-201ENST00000415694 1580 ntBASIC4.4□□□□□ -1.71
HOXA1P49639 OR4F5-202ENST00000641515 2618 ntAPPRIS P1 BASIC4.4□□□□□ -1.71
HOXA1P49639 HACD4-202ENST00000495827 8267 ntAPPRIS P1 TSL 2 BASIC4.39□□□□□ -1.71
HOXA1P49639 EIF4EBP2-201ENST00000373218 7257 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
HOXA1P49639 FAM184A-204ENST00000368475 3392 ntTSL 2 BASIC4.39□□□□□ -1.71
HOXA1P49639 NDUFS1-207ENST00000455934 3361 ntTSL 2 BASIC4.39□□□□□ -1.71
HOXA1P49639 AP001267.1-201ENST00000531742 2074 ntTSL 2 BASIC4.39□□□□□ -1.71
HOXA1P49639 AJ009632.2-204ENST00000635621 1401 ntTSL 5 BASIC4.39□□□□□ -1.71
HOXA1P49639 IL1R1-204ENST00000409929 1858 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
HOXA1P49639 AC093535.2-201ENST00000624769 2326 ntBASIC4.39□□□□□ -1.71
HOXA1P49639 RBM41-201ENST00000372479 1662 ntAPPRIS P3 TSL 1 (best) BASIC4.39□□□□□ -1.71
HOXA1P49639 UGT2A2-202ENST00000604629 1676 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
HOXA1P49639 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC4.39□□□□□ -1.71
HOXA1P49639 CPXCR1-203ENST00000614120 1485 ntAPPRIS P1 TSL 3 BASIC4.39□□□□□ -1.71
HOXA1P49639 LINC02401-201ENST00000550185 3059 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
HOXA1P49639 PLCH1-201ENST00000334686 6128 ntAPPRIS P3 TSL 1 (best) BASIC4.39□□□□□ -1.71
HOXA1P49639 OR14C36-201ENST00000317861 939 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
HOXA1P49639 SNORA64.1-201ENST00000362600 132 ntBASIC4.39□□□□□ -1.71
HOXA1P49639 LST1-207ENST00000376092 285 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
HOXA1P49639 Y_RNA.472-201ENST00000384322 102 ntBASIC4.39□□□□□ -1.71
HOXA1P49639 MIR513B-201ENST00000385136 84 ntBASIC4.39□□□□□ -1.71
HOXA1P49639 RNU6-932P-201ENST00000391108 106 ntBASIC4.39□□□□□ -1.71
HOXA1P49639 RNF212B-201ENST00000399905 1071 ntTSL 5 BASIC4.39□□□□□ -1.71
HOXA1P49639 RPL7P27-201ENST00000403775 720 ntBASIC4.39□□□□□ -1.71
HOXA1P49639 AC073071.1-201ENST00000412410 388 ntTSL 3 BASIC4.39□□□□□ -1.71
HOXA1P49639 LIPT1P1-201ENST00000415870 1186 ntBASIC4.39□□□□□ -1.71
HOXA1P49639 LINC01203-201ENST00000419566 580 ntTSL 2 BASIC4.39□□□□□ -1.71
HOXA1P49639 ODF2-AS1-201ENST00000420801 407 ntTSL 3 BASIC4.39□□□□□ -1.71
HOXA1P49639 NAP1L4P2-201ENST00000425958 899 ntBASIC4.39□□□□□ -1.71
HOXA1P49639 BX323845.3-201ENST00000428215 527 ntBASIC4.39□□□□□ -1.71
HOXA1P49639 AC069154.1-201ENST00000432914 542 ntBASIC4.39□□□□□ -1.71
HOXA1P49639 MTCO1P52-201ENST00000433928 531 ntBASIC4.39□□□□□ -1.71
HOXA1P49639 C1orf140-201ENST00000434398 645 ntTSL 3 BASIC4.39□□□□□ -1.71
HOXA1P49639 AL139294.1-201ENST00000435739 512 ntTSL 2 BASIC4.39□□□□□ -1.71
HOXA1P49639 AC006333.1-202ENST00000440504 555 ntTSL 4 BASIC4.39□□□□□ -1.71
HOXA1P49639 AL357520.1-201ENST00000441557 453 ntBASIC4.39□□□□□ -1.71
HOXA1P49639 AC016772.1-201ENST00000444170 1261 ntBASIC4.39□□□□□ -1.71
HOXA1P49639 NAALADL2-AS3-202ENST00000453180 413 ntTSL 3 BASIC4.39□□□□□ -1.71
HOXA1P49639 AC068489.1-201ENST00000453706 261 ntTSL 5 BASIC4.39□□□□□ -1.71
HOXA1P49639 PTGES3P5-201ENST00000455109 434 ntBASIC4.39□□□□□ -1.71
HOXA1P49639 SNORD11.1-201ENST00000459482 85 ntBASIC4.39□□□□□ -1.71
HOXA1P49639 CCDC75P1-201ENST00000469247 791 ntBASIC4.39□□□□□ -1.71
HOXA1P49639 AC020898.1-201ENST00000474167 787 ntBASIC4.39□□□□□ -1.71
HOXA1P49639 RPS17P15-201ENST00000475609 349 ntBASIC4.39□□□□□ -1.71
HOXA1P49639 AC037198.2-201ENST00000478845 733 ntBASIC4.39□□□□□ -1.71
HOXA1P49639 METTL15P1-201ENST00000481421 1045 ntBASIC4.39□□□□□ -1.71
HOXA1P49639 PRB1-202ENST00000500254 775 ntAPPRIS P3 TSL 1 (best) BASIC4.39□□□□□ -1.71
HOXA1P49639 MEF2C-AS1-208ENST00000512585 741 ntTSL 5 BASIC4.39□□□□□ -1.71
HOXA1P49639 RNA5SP438-201ENST00000516561 112 ntBASIC4.39□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 83 ms