Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 CDC42BPA-204ENST00000366767 9320 ntTSL 1 (best) BASIC7.25□□□□□ -1.25
CUX1P39880 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
CUX1P39880 MEIOB-201ENST00000325962 1694 ntAPPRIS P1 TSL 5 BASIC7.24□□□□□ -1.25
CUX1P39880 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC7.24□□□□□ -1.25
CUX1P39880 KMT5B-215ENST00000615954 4306 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
CUX1P39880 FAN1-202ENST00000561594 2738 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
CUX1P39880 SNORA63.1-201ENST00000362493 131 ntBASIC7.24□□□□□ -1.25
CUX1P39880 RNA5SP307-201ENST00000362863 116 ntBASIC7.24□□□□□ -1.25
CUX1P39880 PDC-201ENST00000391997 1242 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
CUX1P39880 AL500522.2-201ENST00000448562 343 ntBASIC7.24□□□□□ -1.25
CUX1P39880 RPL35AP15-201ENST00000468042 339 ntBASIC7.24□□□□□ -1.25
CUX1P39880 MTND4LP31-201ENST00000514859 294 ntBASIC7.24□□□□□ -1.25
CUX1P39880 IGKV2-23-201ENST00000518729 323 ntBASIC7.24□□□□□ -1.25
CUX1P39880 AC087439.2-201ENST00000519498 552 ntTSL 3 BASIC7.24□□□□□ -1.25
CUX1P39880 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC7.24□□□□□ -1.25
CUX1P39880 AC024220.1-201ENST00000603675 484 ntBASIC7.24□□□□□ -1.25
CUX1P39880 AL160290.3-201ENST00000604869 165 ntBASIC7.24□□□□□ -1.25
CUX1P39880 AL451086.1-201ENST00000605596 223 ntBASIC7.24□□□□□ -1.25
CUX1P39880 AC010608.2-201ENST00000624830 470 ntBASIC7.24□□□□□ -1.25
CUX1P39880 RPS4Y2-201ENST00000629237 792 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
CUX1P39880 SAMD12-202ENST00000409003 8866 ntAPPRIS P1 TSL 5 BASIC7.24□□□□□ -1.25
CUX1P39880 PCDH15-202ENST00000361849 7017 ntTSL 5 BASIC7.24□□□□□ -1.25
CUX1P39880 PCDH15-205ENST00000373957 7032 ntTSL 5 BASIC7.24□□□□□ -1.25
CUX1P39880 MYO6-201ENST00000369975 5387 ntTSL 5 BASIC7.24□□□□□ -1.25
CUX1P39880 CPA3-201ENST00000296046 1795 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
CUX1P39880 EXO1-208ENST00000518483 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC7.23□□□□□ -1.25
CUX1P39880 CACNA1E-204ENST00000367567 14757 ntAPPRIS ALT2 TSL 5 BASIC7.23□□□□□ -1.25
CUX1P39880 NXPH1-205ENST00000602349 1953 ntBASIC7.23□□□□□ -1.25
CUX1P39880 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC7.23□□□□□ -1.25
CUX1P39880 CLEC7A-206ENST00000396484 1000 ntTSL 1 (best) BASIC7.23□□□□□ -1.25
CUX1P39880 RN7SKP182-201ENST00000410772 298 ntBASIC7.23□□□□□ -1.25
CUX1P39880 AC069157.1-201ENST00000421749 137 ntBASIC7.23□□□□□ -1.25
CUX1P39880 DDX39BP2-208ENST00000453923 258 ntBASIC7.23□□□□□ -1.25
CUX1P39880 ADGRL3-AS1-203ENST00000506704 606 ntTSL 5 BASIC7.23□□□□□ -1.25
CUX1P39880 RNA5SP497-201ENST00000516081 97 ntBASIC7.23□□□□□ -1.25
CUX1P39880 IFITM8P-201ENST00000522529 394 ntBASIC7.23□□□□□ -1.25
CUX1P39880 ABHD15-AS1-201ENST00000581474 187 ntTSL 5 BASIC7.23□□□□□ -1.25
CUX1P39880 AL021997.2-201ENST00000615674 271 ntBASIC7.23□□□□□ -1.25
CUX1P39880 AC004803.1-201ENST00000503602 3207 ntTSL 1 (best) BASIC7.23□□□□□ -1.25
CUX1P39880 AC105074.1-201ENST00000623380 3095 ntBASIC7.23□□□□□ -1.25
CUX1P39880 ATP2C1-212ENST00000507488 3579 ntAPPRIS ALT2 TSL 2 BASIC7.23□□□□□ -1.25
CUX1P39880 USP45-204ENST00000369233 2514 ntTSL 5 BASIC7.23□□□□□ -1.25
CUX1P39880 AL672167.2-201ENST00000377164 879 ntBASIC7.22□□□□□ -1.25
CUX1P39880 RPL7P58-201ENST00000402913 758 ntBASIC7.22□□□□□ -1.25
CUX1P39880 AP000357.1-201ENST00000409926 1165 ntBASIC7.22□□□□□ -1.25
CUX1P39880 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC7.22□□□□□ -1.25
CUX1P39880 CD200R1-205ENST00000490004 778 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
CUX1P39880 THAP6-209ENST00000507556 1134 ntTSL 2 BASIC7.22□□□□□ -1.25
CUX1P39880 PLAC8-205ENST00000509973 489 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
CUX1P39880 AC079209.1-201ENST00000519412 820 ntTSL 3 BASIC7.22□□□□□ -1.25
CUX1P39880 OR7E10P-201ENST00000526420 991 ntBASIC7.22□□□□□ -1.25
CUX1P39880 SOX9-AS1-211ENST00000533179 460 ntTSL 3 BASIC7.22□□□□□ -1.25
CUX1P39880 LINC02319-201ENST00000555852 349 ntTSL 3 BASIC7.22□□□□□ -1.25
CUX1P39880 ARIH1-201ENST00000379887 21681 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
CUX1P39880 AKAP6-213ENST00000557354 5259 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
CUX1P39880 AC113146.2-201ENST00000560743 1961 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
CUX1P39880 PATE1-201ENST00000305738 1527 ntAPPRIS P2 TSL 1 (best) BASIC7.22□□□□□ -1.25
CUX1P39880 SLC4A4-202ENST00000340595 7640 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
CUX1P39880 CNNM2-202ENST00000369878 15857 ntAPPRIS P4 TSL 1 (best) BASIC7.22□□□□□ -1.25
CUX1P39880 JCHAIN-201ENST00000254801 1438 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
CUX1P39880 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC7.22□□□□□ -1.25
CUX1P39880 TRIM77-201ENST00000398290 1353 ntAPPRIS P1 TSL 5 BASIC7.22□□□□□ -1.25
CUX1P39880 ZNF12-203ENST00000404360 4474 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
CUX1P39880 MIR133A2-201ENST00000347538 102 ntBASIC7.22□□□□□ -1.25
CUX1P39880 RNU1-20P-201ENST00000363314 162 ntBASIC7.22□□□□□ -1.25
CUX1P39880 RPL7P2-201ENST00000427639 268 ntBASIC7.22□□□□□ -1.25
CUX1P39880 AL356421.2-201ENST00000446733 197 ntTSL 3 BASIC7.22□□□□□ -1.25
CUX1P39880 AC010460.1-201ENST00000507087 466 ntBASIC7.22□□□□□ -1.25
CUX1P39880 KCTD9P2-201ENST00000512203 1013 ntBASIC7.22□□□□□ -1.25
CUX1P39880 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC7.22□□□□□ -1.25
CUX1P39880 FRMD6-AS2-202ENST00000557625 581 ntTSL 4 BASIC7.22□□□□□ -1.25
CUX1P39880 AC091178.1-203ENST00000584586 279 ntBASIC7.22□□□□□ -1.25
CUX1P39880 AL031658.2-201ENST00000616850 651 ntBASIC7.22□□□□□ -1.25
CUX1P39880 AC007546.2-201ENST00000623996 360 ntBASIC7.22□□□□□ -1.25
CUX1P39880 OPRM1-217ENST00000522236 2459 ntTSL 1 (best) BASIC7.21□□□□□ -1.25
CUX1P39880 LINC01676-202ENST00000435253 1849 ntTSL 1 (best) BASIC7.21□□□□□ -1.25
CUX1P39880 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC7.21□□□□□ -1.25
CUX1P39880 MFSD8-242ENST00000641690 4199 ntBASIC7.21□□□□□ -1.25
CUX1P39880 IBTK-206ENST00000503631 3560 ntTSL 1 (best) BASIC7.21□□□□□ -1.25
CUX1P39880 PCDH15-212ENST00000395442 2970 ntTSL 5 BASIC7.21□□□□□ -1.25
CUX1P39880 PRR14L-201ENST00000327423 10826 ntAPPRIS P2 TSL 5 BASIC7.21□□□□□ -1.25
CUX1P39880 ERGIC2-212ENST00000611644 4961 ntTSL 5 BASIC7.21□□□□□ -1.26
CUX1P39880 NPVF-201ENST00000222674 1190 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.26
CUX1P39880 TAS2R19-201ENST00000390673 1002 ntAPPRIS P1 BASIC7.21□□□□□ -1.26
CUX1P39880 AC062016.2-201ENST00000420950 676 ntBASIC7.21□□□□□ -1.26
CUX1P39880 AC018742.1-201ENST00000435237 488 ntTSL 3 BASIC7.21□□□□□ -1.26
CUX1P39880 LINC00704-202ENST00000443994 418 ntTSL 2 BASIC7.21□□□□□ -1.26
CUX1P39880 PLSCR5-202ENST00000482567 1018 ntTSL 1 (best) BASIC7.21□□□□□ -1.26
CUX1P39880 AC104164.2-201ENST00000496953 495 ntBASIC7.21□□□□□ -1.26
CUX1P39880 DPPA3P2-201ENST00000553589 478 ntBASIC7.21□□□□□ -1.26
CUX1P39880 Z98200.1-201ENST00000607298 470 ntBASIC7.21□□□□□ -1.26
CUX1P39880 AL121772.2-201ENST00000614331 297 ntBASIC7.21□□□□□ -1.26
CUX1P39880 AC244196.2-201ENST00000621184 411 ntAPPRIS P1 BASIC7.21□□□□□ -1.26
CUX1P39880 RFC1-201ENST00000349703 4859 ntAPPRIS P3 TSL 1 (best) BASIC7.2□□□□□ -1.26
CUX1P39880 RFC1-202ENST00000381897 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC7.2□□□□□ -1.26
CUX1P39880 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC7.2□□□□□ -1.26
CUX1P39880 PCDH15-209ENST00000395433 6942 ntTSL 5 BASIC7.2□□□□□ -1.26
CUX1P39880 FYB1-201ENST00000351578 4750 ntAPPRIS P3 TSL 1 (best) BASIC7.2□□□□□ -1.26
CUX1P39880 PPP1R9A-205ENST00000424654 4058 ntTSL 5 BASIC7.2□□□□□ -1.26
CUX1P39880 RPGRIP1-201ENST00000382933 2004 ntTSL 1 (best) BASIC7.2□□□□□ -1.26
Retrieved 100 of 98,524 protein–RNA pairs in 111.4 ms