Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 LINC00550-201ENST00000629293 3434 ntTSL 1 (best) BASIC3.53□□□□□ -1.85
HLA-DMBP28068 AL450326.2-201ENST00000421913 1962 ntBASIC3.52□□□□□ -1.85
HLA-DMBP28068 RAB23-201ENST00000317483 2546 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
HLA-DMBP28068 MTND4P26-201ENST00000415971 1359 ntBASIC3.52□□□□□ -1.85
HLA-DMBP28068 CNGA1-209ENST00000544810 2722 ntAPPRIS ALT2 TSL 5 BASIC3.52□□□□□ -1.85
HLA-DMBP28068 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
HLA-DMBP28068 AL031119.1-201ENST00000404707 1879 ntBASIC3.52□□□□□ -1.85
HLA-DMBP28068 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC3.52□□□□□ -1.85
HLA-DMBP28068 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC3.52□□□□□ -1.85
HLA-DMBP28068 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC3.52□□□□□ -1.85
HLA-DMBP28068 XPO4-201ENST00000255305 9921 ntAPPRIS P2 TSL 1 (best) BASIC3.52□□□□□ -1.85
HLA-DMBP28068 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC3.52□□□□□ -1.85
HLA-DMBP28068 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC3.52□□□□□ -1.85
HLA-DMBP28068 RWDD2B-207ENST00000493196 3094 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
HLA-DMBP28068 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
HLA-DMBP28068 OR56B2P-201ENST00000317102 954 ntBASIC3.52□□□□□ -1.85
HLA-DMBP28068 OR4N5-201ENST00000333629 927 ntAPPRIS P1 BASIC3.52□□□□□ -1.85
HLA-DMBP28068 ADIG-201ENST00000373348 430 ntTSL 2 BASIC3.52□□□□□ -1.85
HLA-DMBP28068 TAS2R31-201ENST00000390675 1021 ntAPPRIS P1 BASIC3.52□□□□□ -1.85
HLA-DMBP28068 RNA5SP372-201ENST00000390836 115 ntBASIC3.52□□□□□ -1.85
HLA-DMBP28068 AL160275.2-201ENST00000412010 394 ntBASIC3.52□□□□□ -1.85
HLA-DMBP28068 OR51B3P-201ENST00000412287 913 ntBASIC3.52□□□□□ -1.85
HLA-DMBP28068 SEPT7P8-201ENST00000413308 775 ntBASIC3.52□□□□□ -1.85
HLA-DMBP28068 AC008154.2-201ENST00000420268 414 ntTSL 3 BASIC3.52□□□□□ -1.85
HLA-DMBP28068 RPL21P43-201ENST00000425440 472 ntBASIC3.52□□□□□ -1.85
HLA-DMBP28068 AL031599.1-201ENST00000432694 808 ntTSL 3 BASIC3.52□□□□□ -1.85
HLA-DMBP28068 HMGB3P10-201ENST00000434734 572 ntBASIC3.52□□□□□ -1.85
HLA-DMBP28068 AL357520.1-201ENST00000441557 453 ntBASIC3.52□□□□□ -1.85
HLA-DMBP28068 LINC01431-201ENST00000442440 514 ntTSL 3 BASIC3.52□□□□□ -1.85
HLA-DMBP28068 LINC01206-203ENST00000476815 482 ntTSL 3 BASIC3.52□□□□□ -1.85
HLA-DMBP28068 DEFB109F-201ENST00000491870 277 ntBASIC3.52□□□□□ -1.85
HLA-DMBP28068 PPM1AP1-201ENST00000502740 1135 ntBASIC3.52□□□□□ -1.85
HLA-DMBP28068 LINC01332-201ENST00000506612 502 ntTSL 4 BASIC3.52□□□□□ -1.85
HLA-DMBP28068 AC096773.1-201ENST00000506852 648 ntTSL 3 BASIC3.52□□□□□ -1.85
HLA-DMBP28068 LINC02236-201ENST00000508881 552 ntTSL 4 BASIC3.52□□□□□ -1.85
HLA-DMBP28068 AC026434.1-201ENST00000511474 454 ntTSL 3 BASIC3.52□□□□□ -1.85
HLA-DMBP28068 OR7H2P-201ENST00000513483 306 ntBASIC3.52□□□□□ -1.85
HLA-DMBP28068 AC018682.2-201ENST00000517716 399 ntTSL 5 BASIC3.52□□□□□ -1.85
HLA-DMBP28068 AC044810.3-201ENST00000527565 589 ntTSL 3 BASIC3.52□□□□□ -1.85
HLA-DMBP28068 MS4A7-208ENST00000530234 730 ntTSL 3 BASIC3.52□□□□□ -1.85
HLA-DMBP28068 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC3.52□□□□□ -1.85
HLA-DMBP28068 AC090125.1-201ENST00000581541 493 ntTSL 3 BASIC3.52□□□□□ -1.85
HLA-DMBP28068 MIR4270-201ENST00000581799 70 ntBASIC3.52□□□□□ -1.85
HLA-DMBP28068 MIR7515HG-226ENST00000588330 1055 ntTSL 5 BASIC3.52□□□□□ -1.85
HLA-DMBP28068 PSMD5-AS1-203ENST00000589026 525 ntTSL 5 BASIC3.52□□□□□ -1.85
HLA-DMBP28068 AC026979.4-201ENST00000606555 645 ntBASIC3.52□□□□□ -1.85
HLA-DMBP28068 CR381572.2-201ENST00000624852 397 ntBASIC3.52□□□□□ -1.85
HLA-DMBP28068 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC3.52□□□□□ -1.85
HLA-DMBP28068 LINC02389-201ENST00000535058 3546 ntTSL 2 BASIC3.52□□□□□ -1.85
HLA-DMBP28068 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC3.52□□□□□ -1.85
HLA-DMBP28068 FPGT-208ENST00000534056 1426 ntTSL 2 BASIC3.52□□□□□ -1.85
HLA-DMBP28068 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
HLA-DMBP28068 FAM107B-229ENST00000622567 3510 ntAPPRIS P1 TSL 2 BASIC3.52□□□□□ -1.85
HLA-DMBP28068 MRE11-202ENST00000323977 2588 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
HLA-DMBP28068 AL353784.1-201ENST00000422842 2300 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
HLA-DMBP28068 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
HLA-DMBP28068 C1orf141-208ENST00000621590 4179 ntAPPRIS ALT2 TSL 5 BASIC3.52□□□□□ -1.85
HLA-DMBP28068 CARF-203ENST00000414439 2099 ntTSL 2 BASIC3.51□□□□□ -1.85
HLA-DMBP28068 R3HDM1-203ENST00000409606 3673 ntAPPRIS ALT1 TSL 2 BASIC3.51□□□□□ -1.85
HLA-DMBP28068 ZNF208-207ENST00000609966 3653 ntTSL 5 BASIC3.51□□□□□ -1.85
HLA-DMBP28068 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
HLA-DMBP28068 BAALC-AS1-201ENST00000499522 1353 ntTSL 5 BASIC3.51□□□□□ -1.85
HLA-DMBP28068 UGT2A3-201ENST00000251566 2965 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
HLA-DMBP28068 MARCH1-201ENST00000274056 5367 ntAPPRIS P1 TSL 4 BASIC3.51□□□□□ -1.85
HLA-DMBP28068 KIF21A-201ENST00000361418 5044 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
HLA-DMBP28068 CLEC7A-202ENST00000304084 1130 ntAPPRIS ALT1 TSL 1 (best) BASIC3.51□□□□□ -1.85
HLA-DMBP28068 DSCR8-201ENST00000357704 552 ntAPPRIS P5 TSL 2 BASIC3.51□□□□□ -1.85
HLA-DMBP28068 RNA5SP443-201ENST00000363083 132 ntBASIC3.51□□□□□ -1.85
HLA-DMBP28068 OR5L2-201ENST00000378397 936 ntAPPRIS P1 BASIC3.51□□□□□ -1.85
HLA-DMBP28068 RNA5SP87-201ENST00000384155 118 ntBASIC3.51□□□□□ -1.85
HLA-DMBP28068 RNU6-1263P-201ENST00000384601 106 ntBASIC3.51□□□□□ -1.85
HLA-DMBP28068 DSCR8-202ENST00000400477 534 ntAPPRIS ALT2 TSL 1 (best) BASIC3.51□□□□□ -1.85
HLA-DMBP28068 HDGFP1-201ENST00000405943 252 ntBASIC3.51□□□□□ -1.85
HLA-DMBP28068 RN7SKP216-201ENST00000411050 312 ntBASIC3.51□□□□□ -1.85
HLA-DMBP28068 RSU1P3-201ENST00000412878 835 ntBASIC3.51□□□□□ -1.85
HLA-DMBP28068 AL591848.1-201ENST00000413092 322 ntBASIC3.51□□□□□ -1.85
HLA-DMBP28068 LINC00502-201ENST00000423621 445 ntTSL 3 BASIC3.51□□□□□ -1.85
HLA-DMBP28068 AL590723.1-201ENST00000426030 629 ntTSL 5 BASIC3.51□□□□□ -1.85
HLA-DMBP28068 C6orf52-203ENST00000426700 493 ntAPPRIS P2 TSL 2 BASIC3.51□□□□□ -1.85
HLA-DMBP28068 PPIAP13-201ENST00000434706 478 ntBASIC3.51□□□□□ -1.85
HLA-DMBP28068 AC069285.2-201ENST00000440210 275 ntBASIC3.51□□□□□ -1.85
HLA-DMBP28068 AL356289.2-201ENST00000455238 292 ntTSL 5 BASIC3.51□□□□□ -1.85
HLA-DMBP28068 AL356390.1-201ENST00000455684 397 ntBASIC3.51□□□□□ -1.85
HLA-DMBP28068 TPPP2-202ENST00000460647 568 ntTSL 3 BASIC3.51□□□□□ -1.85
HLA-DMBP28068 AC090142.1-201ENST00000465776 462 ntBASIC3.51□□□□□ -1.85
HLA-DMBP28068 RPS29P22-201ENST00000472363 168 ntBASIC3.51□□□□□ -1.85
HLA-DMBP28068 TRBV8-1-201ENST00000481590 279 ntBASIC3.51□□□□□ -1.85
HLA-DMBP28068 UBA52P3-201ENST00000491303 382 ntBASIC3.51□□□□□ -1.85
HLA-DMBP28068 ATXN3-206ENST00000502250 1259 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
HLA-DMBP28068 TRIM36-IT1-201ENST00000503723 881 ntBASIC3.51□□□□□ -1.85
HLA-DMBP28068 AC090673.1-204ENST00000504038 977 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
HLA-DMBP28068 RNU1-6P-201ENST00000516290 144 ntBASIC3.51□□□□□ -1.85
HLA-DMBP28068 AC104257.1-202ENST00000524275 884 ntTSL 3 BASIC3.51□□□□□ -1.85
HLA-DMBP28068 AP001880.2-201ENST00000538233 448 ntBASIC3.51□□□□□ -1.85
HLA-DMBP28068 AP002518.2-201ENST00000544925 393 ntTSL 5 BASIC3.51□□□□□ -1.85
HLA-DMBP28068 AC069437.1-201ENST00000551372 512 ntTSL 4 BASIC3.51□□□□□ -1.85
HLA-DMBP28068 AC104002.2-201ENST00000553919 318 ntTSL 5 BASIC3.51□□□□□ -1.85
HLA-DMBP28068 AC087636.1-201ENST00000554787 573 ntTSL 4 BASIC3.51□□□□□ -1.85
HLA-DMBP28068 UBE2FP2-201ENST00000566646 462 ntBASIC3.51□□□□□ -1.85
HLA-DMBP28068 C1QBP-206ENST00000574444 901 ntTSL 3 BASIC3.51□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 92.3 ms