Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 TRAV36DV7-201ENST00000390463 356 ntAPPRIS P1 BASIC5.47□□□□□ -1.53
BDNFP23560 AL589647.1-201ENST00000402485 466 ntBASIC5.47□□□□□ -1.53
BDNFP23560 MTATP6P31-201ENST00000406985 692 ntBASIC5.47□□□□□ -1.53
BDNFP23560 AC004022.2-201ENST00000413824 193 ntBASIC5.47□□□□□ -1.53
BDNFP23560 LINC01589-201ENST00000422971 548 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
BDNFP23560 AL159174.1-202ENST00000425588 442 ntTSL 3 BASIC5.47□□□□□ -1.53
BDNFP23560 AC016912.1-201ENST00000432241 545 ntTSL 3 BASIC5.47□□□□□ -1.53
BDNFP23560 RPL19P16-201ENST00000433839 588 ntBASIC5.47□□□□□ -1.53
BDNFP23560 AL450992.2-201ENST00000434182 506 ntTSL 5 BASIC5.47□□□□□ -1.53
BDNFP23560 FKBP7-205ENST00000434643 666 ntAPPRIS ALT2 TSL 1 (best) BASIC5.47□□□□□ -1.53
BDNFP23560 AL096855.1-202ENST00000444276 439 ntTSL 2 BASIC5.47□□□□□ -1.53
BDNFP23560 AC090804.1-201ENST00000448870 490 ntBASIC5.47□□□□□ -1.53
BDNFP23560 EIF4EBP2P1-201ENST00000450009 343 ntBASIC5.47□□□□□ -1.53
BDNFP23560 LINC01753-201ENST00000458145 631 ntTSL 3 BASIC5.47□□□□□ -1.53
BDNFP23560 AC117430.1-201ENST00000474711 801 ntTSL 5 BASIC5.47□□□□□ -1.53
BDNFP23560 AC023424.1-201ENST00000496058 459 ntBASIC5.47□□□□□ -1.53
BDNFP23560 MTND3P24-201ENST00000506306 329 ntBASIC5.47□□□□□ -1.53
BDNFP23560 OR5H4P-201ENST00000510851 923 ntBASIC5.47□□□□□ -1.53
BDNFP23560 AC110775.1-201ENST00000513721 462 ntBASIC5.47□□□□□ -1.53
BDNFP23560 RN7SKP283-201ENST00000517197 270 ntBASIC5.47□□□□□ -1.53
BDNFP23560 AC055878.1-201ENST00000531858 281 ntTSL 3 BASIC5.47□□□□□ -1.53
BDNFP23560 LINC02408-202ENST00000538573 559 ntTSL 4 BASIC5.47□□□□□ -1.53
BDNFP23560 AC074029.1-201ENST00000552531 1044 ntBASIC5.47□□□□□ -1.53
BDNFP23560 AC142086.4-201ENST00000568904 650 ntTSL 3 BASIC5.47□□□□□ -1.53
BDNFP23560 DIAPH2-AS1-204ENST00000579945 974 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
BDNFP23560 AF230666.2-201ENST00000602328 725 ntBASIC5.47□□□□□ -1.53
BDNFP23560 OR2BH1P-201ENST00000608850 864 ntBASIC5.47□□□□□ -1.53
BDNFP23560 AC118658.2-201ENST00000618697 459 ntBASIC5.47□□□□□ -1.53
BDNFP23560 TEX41-254ENST00000626394 423 ntTSL 5 BASIC5.47□□□□□ -1.53
BDNFP23560 KIF23-206ENST00000558585 2296 ntTSL 2 BASIC5.47□□□□□ -1.53
BDNFP23560 GLRA2-202ENST00000355020 1730 ntAPPRIS ALT1 TSL 1 (best) BASIC5.47□□□□□ -1.53
BDNFP23560 EEF1A1-210ENST00000610520 3447 ntTSL 5 BASIC5.47□□□□□ -1.53
BDNFP23560 PLCXD3-201ENST00000328457 7538 ntAPPRIS P1 TSL 5 BASIC5.47□□□□□ -1.53
BDNFP23560 AP001029.2-203ENST00000589795 4910 ntBASIC5.47□□□□□ -1.53
BDNFP23560 USF3-202ENST00000478658 8461 ntAPPRIS P2 TSL 5 BASIC5.47□□□□□ -1.53
BDNFP23560 LDAH-211ENST00000541941 3807 ntTSL 2 BASIC5.47□□□□□ -1.53
BDNFP23560 LMO3-209ENST00000447609 3365 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
BDNFP23560 DENND4A-201ENST00000431932 5875 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.53
BDNFP23560 UACA-211ENST00000560441 4723 ntAPPRIS ALT2 TSL 5 BASIC5.46□□□□□ -1.53
BDNFP23560 MTUS1-202ENST00000297488 3731 ntAPPRIS ALT1 TSL 1 (best) BASIC5.46□□□□□ -1.53
BDNFP23560 TRPM3-209ENST00000377110 12258 ntAPPRIS ALT1 TSL 1 (best) BASIC5.46□□□□□ -1.53
BDNFP23560 IL31RA-204ENST00000396834 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC5.46□□□□□ -1.54
BDNFP23560 AC083899.2-201ENST00000423285 1376 ntBASIC5.46□□□□□ -1.54
BDNFP23560 MEG8-223ENST00000638012 3757 ntTSL 5 BASIC5.46□□□□□ -1.54
BDNFP23560 DNM3OS-201ENST00000417354 4358 ntTSL 4 BASIC5.46□□□□□ -1.54
BDNFP23560 GOLPH3L-201ENST00000271732 2999 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
BDNFP23560 NCOA7-202ENST00000368357 5521 ntAPPRIS P3 TSL 1 (best) BASIC5.46□□□□□ -1.54
BDNFP23560 MRRF-207ENST00000373729 870 ntTSL 3 BASIC5.46□□□□□ -1.54
BDNFP23560 AL035419.1-201ENST00000397037 564 ntBASIC5.46□□□□□ -1.54
BDNFP23560 AL591468.1-201ENST00000417932 573 ntTSL 3 BASIC5.46□□□□□ -1.54
BDNFP23560 SLC9B1P4-201ENST00000421957 1288 ntBASIC5.46□□□□□ -1.54
BDNFP23560 AC073310.1-201ENST00000423226 1033 ntBASIC5.46□□□□□ -1.54
BDNFP23560 AL591719.2-201ENST00000437400 386 ntTSL 3 BASIC5.46□□□□□ -1.54
BDNFP23560 AC079760.2-201ENST00000449361 681 ntTSL 5 BASIC5.46□□□□□ -1.54
BDNFP23560 OTX2P1-201ENST00000450956 354 ntBASIC5.46□□□□□ -1.54
BDNFP23560 MORC1-AS1-201ENST00000480826 564 ntTSL 2 BASIC5.46□□□□□ -1.54
BDNFP23560 PLSCR5-202ENST00000482567 1018 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
BDNFP23560 RN7SL814P-201ENST00000487715 300 ntBASIC5.46□□□□□ -1.54
BDNFP23560 AL035404.1-201ENST00000497982 568 ntBASIC5.46□□□□□ -1.54
BDNFP23560 AC005674.1-201ENST00000503493 459 ntTSL 3 BASIC5.46□□□□□ -1.54
BDNFP23560 AC016687.2-201ENST00000504795 541 ntTSL 5 BASIC5.46□□□□□ -1.54
BDNFP23560 MAL2-205ENST00000521048 575 ntTSL 4 BASIC5.46□□□□□ -1.54
BDNFP23560 AC092709.1-201ENST00000521355 1045 ntBASIC5.46□□□□□ -1.54
BDNFP23560 C8orf59-206ENST00000545322 491 ntTSL 3 BASIC5.46□□□□□ -1.54
BDNFP23560 AP002383.3-201ENST00000545958 593 ntTSL 4 BASIC5.46□□□□□ -1.54
BDNFP23560 AL358333.1-201ENST00000555115 467 ntTSL 3 BASIC5.46□□□□□ -1.54
BDNFP23560 AL133371.2-201ENST00000556624 294 ntTSL 3 BASIC5.46□□□□□ -1.54
BDNFP23560 AC133644.2-201ENST00000608142 540 ntBASIC5.46□□□□□ -1.54
BDNFP23560 Metazoa_SRP.93-201ENST00000622525 276 ntBASIC5.46□□□□□ -1.54
BDNFP23560 C2orf83-206ENST00000642055 453 ntAPPRIS P3 BASIC5.46□□□□□ -1.54
BDNFP23560 ZNF569-203ENST00000392150 1918 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
BDNFP23560 ADCY10-201ENST00000367848 5055 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
BDNFP23560 OR1E1-201ENST00000322608 1307 ntAPPRIS P1 BASIC5.46□□□□□ -1.54
BDNFP23560 ADGRL3-217ENST00000514591 6297 ntAPPRIS P2 TSL 5 BASIC5.46□□□□□ -1.54
BDNFP23560 SFT2D2-201ENST00000271375 11040 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
BDNFP23560 AC011287.1-206ENST00000638774 2642 ntTSL 5 BASIC5.45□□□□□ -1.54
BDNFP23560 LINC02355-201ENST00000503100 2520 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
BDNFP23560 RNF32-203ENST00000392741 2260 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
BDNFP23560 ADAMTS9-AS1-203ENST00000471990 1606 ntTSL 2 BASIC5.45□□□□□ -1.54
BDNFP23560 THAP12P4-201ENST00000528321 2266 ntBASIC5.45□□□□□ -1.54
BDNFP23560 EIF2AP4-201ENST00000424793 1781 ntBASIC5.45□□□□□ -1.54
BDNFP23560 VPS50-202ENST00000305866 3613 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
BDNFP23560 RNA5SP455-201ENST00000365190 119 ntBASIC5.45□□□□□ -1.54
BDNFP23560 SNORA5.1-201ENST00000384275 131 ntBASIC5.45□□□□□ -1.54
BDNFP23560 RN7SKP114-201ENST00000410327 279 ntBASIC5.45□□□□□ -1.54
BDNFP23560 IPMKP1-201ENST00000425988 855 ntBASIC5.45□□□□□ -1.54
BDNFP23560 EIF2S2P3-201ENST00000428356 999 ntBASIC5.45□□□□□ -1.54
BDNFP23560 RBMY2QP-201ENST00000429799 1147 ntBASIC5.45□□□□□ -1.54
BDNFP23560 AL353689.2-201ENST00000433837 440 ntTSL 3 BASIC5.45□□□□□ -1.54
BDNFP23560 RPL12P3-201ENST00000440080 396 ntBASIC5.45□□□□□ -1.54
BDNFP23560 LINC00412-201ENST00000444744 420 ntTSL 2 BASIC5.45□□□□□ -1.54
BDNFP23560 AL645937.3-201ENST00000453647 936 ntBASIC5.45□□□□□ -1.54
BDNFP23560 AL035407.2-201ENST00000454090 378 ntBASIC5.45□□□□□ -1.54
BDNFP23560 RN7SL97P-201ENST00000486780 299 ntBASIC5.45□□□□□ -1.54
BDNFP23560 AC000372.1-201ENST00000488818 646 ntTSL 2 BASIC5.45□□□□□ -1.54
BDNFP23560 PDCD10-216ENST00000492396 814 ntTSL 5 BASIC5.45□□□□□ -1.54
BDNFP23560 ATXN3-206ENST00000502250 1259 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
BDNFP23560 AC117383.1-201ENST00000507698 422 ntTSL 3 BASIC5.45□□□□□ -1.54
BDNFP23560 AC104108.1-201ENST00000509930 412 ntBASIC5.45□□□□□ -1.54
BDNFP23560 AC025768.1-201ENST00000510057 267 ntBASIC5.45□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 110.5 ms