Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 PPEF1-202ENST00000361511 2890 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
COL5A1P20908 KMT5B-215ENST00000615954 4306 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
COL5A1P20908 ATP13A4-203ENST00000392443 4016 ntTSL 5 BASIC4.31□□□□□ -1.72
COL5A1P20908 PMS1-202ENST00000374826 948 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
COL5A1P20908 SNORA9-201ENST00000384215 133 ntBASIC4.31□□□□□ -1.72
COL5A1P20908 TRAJ4-201ENST00000390533 63 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
COL5A1P20908 MIR1271-201ENST00000408537 86 ntBASIC4.31□□□□□ -1.72
COL5A1P20908 RN7SKP202-201ENST00000410439 330 ntBASIC4.31□□□□□ -1.72
COL5A1P20908 RPL23AP38-201ENST00000423801 469 ntBASIC4.31□□□□□ -1.72
COL5A1P20908 FTH1P25-201ENST00000447665 469 ntBASIC4.31□□□□□ -1.72
COL5A1P20908 RPS20P4-201ENST00000461659 355 ntBASIC4.31□□□□□ -1.72
COL5A1P20908 RPL7L1P8-201ENST00000469911 741 ntBASIC4.31□□□□□ -1.72
COL5A1P20908 RAD21-203ENST00000517749 1003 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
COL5A1P20908 OR8R1P-201ENST00000543943 764 ntBASIC4.31□□□□□ -1.72
COL5A1P20908 LINC02386-201ENST00000551202 509 ntTSL 3 BASIC4.31□□□□□ -1.72
COL5A1P20908 LINC00254-201ENST00000563416 662 ntTSL 3 BASIC4.31□□□□□ -1.72
COL5A1P20908 AC010547.7-201ENST00000570323 333 ntBASIC4.31□□□□□ -1.72
COL5A1P20908 MIR3653-201ENST00000625572 110 ntBASIC4.31□□□□□ -1.72
COL5A1P20908 OR2L1P-202ENST00000641567 1023 ntBASIC4.31□□□□□ -1.72
COL5A1P20908 EXPH5-203ENST00000525344 6542 ntAPPRIS ALT2 TSL 1 (best) BASIC4.31□□□□□ -1.72
COL5A1P20908 CNGA1-202ENST00000402813 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC4.31□□□□□ -1.72
COL5A1P20908 KRTAP24-1-201ENST00000340345 1650 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
COL5A1P20908 SDR42E1-201ENST00000328945 11566 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
COL5A1P20908 HGF-202ENST00000354224 1425 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
COL5A1P20908 RPGRIP1-201ENST00000382933 2004 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
COL5A1P20908 PLCH1-201ENST00000334686 6128 ntAPPRIS P3 TSL 1 (best) BASIC4.31□□□□□ -1.72
COL5A1P20908 LINC02389-201ENST00000535058 3546 ntTSL 2 BASIC4.31□□□□□ -1.72
COL5A1P20908 PIGN-242ENST00000640145 4505 ntAPPRIS P1 TSL 5 BASIC4.31□□□□□ -1.72
COL5A1P20908 PDE7A-201ENST00000379419 2425 ntAPPRIS P3 TSL 2 BASIC4.31□□□□□ -1.72
COL5A1P20908 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC4.3□□□□□ -1.72
COL5A1P20908 MIR372-201ENST00000362225 67 ntBASIC4.3□□□□□ -1.72
COL5A1P20908 RNA5SP372-201ENST00000390836 115 ntBASIC4.3□□□□□ -1.72
COL5A1P20908 CCL7-202ENST00000394627 696 ntTSL 3 BASIC4.3□□□□□ -1.72
COL5A1P20908 LINC00161-201ENST00000412526 870 ntTSL 2 BASIC4.3□□□□□ -1.72
COL5A1P20908 AL590999.1-205ENST00000420293 440 ntTSL 3 BASIC4.3□□□□□ -1.72
COL5A1P20908 AC091390.3-201ENST00000426478 338 ntBASIC4.3□□□□□ -1.72
COL5A1P20908 AC009226.1-201ENST00000432413 539 ntTSL 3 BASIC4.3□□□□□ -1.72
COL5A1P20908 AC007422.1-201ENST00000433065 1008 ntTSL 5 BASIC4.3□□□□□ -1.72
COL5A1P20908 NMNAT1P2-201ENST00000435192 860 ntBASIC4.3□□□□□ -1.72
COL5A1P20908 KCNQ5-IT1-201ENST00000445310 563 ntTSL 2 BASIC4.3□□□□□ -1.72
COL5A1P20908 RPS27AP16-201ENST00000492222 470 ntBASIC4.3□□□□□ -1.72
COL5A1P20908 ATP6V1G1P6-201ENST00000504007 334 ntBASIC4.3□□□□□ -1.72
COL5A1P20908 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC4.3□□□□□ -1.72
COL5A1P20908 TMEM212-205ENST00000619900 585 ntAPPRIS P1 TSL 3 BASIC4.3□□□□□ -1.72
COL5A1P20908 ZNF479-203ENST00000620639 1239 ntTSL 5 BASIC4.3□□□□□ -1.72
COL5A1P20908 TEX41-256ENST00000626411 368 ntTSL 5 BASIC4.3□□□□□ -1.72
COL5A1P20908 LINC01808-202ENST00000641680 1116 ntBASIC4.3□□□□□ -1.72
COL5A1P20908 CDK14-201ENST00000265741 4953 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
COL5A1P20908 KLHL5-202ENST00000261426 3300 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
COL5A1P20908 AC104260.2-201ENST00000623551 3497 ntBASIC4.3□□□□□ -1.72
COL5A1P20908 RALGAPB-202ENST00000397040 8435 ntAPPRIS P3 TSL 1 (best) BASIC4.3□□□□□ -1.72
COL5A1P20908 IL15-204ENST00000477265 6026 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
COL5A1P20908 MRRF-208ENST00000394315 1501 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
COL5A1P20908 BMPR1B-202ENST00000394931 1922 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
COL5A1P20908 SPHKAP-201ENST00000344657 6804 ntAPPRIS P3 TSL 1 (best) BASIC4.3□□□□□ -1.72
COL5A1P20908 MIR331-201ENST00000362302 94 ntBASIC4.3□□□□□ -1.72
COL5A1P20908 5S_rRNA.1-201ENST00000364415 116 ntBASIC4.3□□□□□ -1.72
COL5A1P20908 RNA5SP283-201ENST00000365604 119 ntBASIC4.3□□□□□ -1.72
COL5A1P20908 RNU1-63P-201ENST00000383902 164 ntBASIC4.3□□□□□ -1.72
COL5A1P20908 AL161909.1-201ENST00000397390 712 ntBASIC4.3□□□□□ -1.72
COL5A1P20908 AL353748.1-201ENST00000440753 474 ntBASIC4.3□□□□□ -1.72
COL5A1P20908 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
COL5A1P20908 SNORA59A-201ENST00000459326 152 ntBASIC4.3□□□□□ -1.72
COL5A1P20908 AC022784.7-201ENST00000520017 651 ntTSL 3 BASIC4.3□□□□□ -1.72
COL5A1P20908 G2E3-AS1-201ENST00000548631 579 ntTSL 3 BASIC4.3□□□□□ -1.72
COL5A1P20908 MIR6867-201ENST00000610636 67 ntBASIC4.3□□□□□ -1.72
COL5A1P20908 MIR8069-1-201ENST00000616627 86 ntBASIC4.3□□□□□ -1.72
COL5A1P20908 MIR8069-2-201ENST00000621412 86 ntBASIC4.3□□□□□ -1.72
COL5A1P20908 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC4.3□□□□□ -1.72
COL5A1P20908 SYCP1-210ENST00000618516 3109 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
COL5A1P20908 PSG1-201ENST00000244296 2276 ntAPPRIS P3 TSL 1 (best) BASIC4.3□□□□□ -1.72
COL5A1P20908 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC4.29□□□□□ -1.72
COL5A1P20908 MAPK10-372ENST00000641954 3413 ntBASIC4.29□□□□□ -1.72
COL5A1P20908 NCOA7-202ENST00000368357 5521 ntAPPRIS P3 TSL 1 (best) BASIC4.29□□□□□ -1.72
COL5A1P20908 CHMP1B2P-202ENST00000614414 6813 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
COL5A1P20908 PIK3C2A-201ENST00000265970 8227 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
COL5A1P20908 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC4.29□□□□□ -1.72
COL5A1P20908 EYA1-203ENST00000388740 3788 ntTSL 5 BASIC4.29□□□□□ -1.72
COL5A1P20908 RN7SKP186-201ENST00000365371 303 ntBASIC4.29□□□□□ -1.72
COL5A1P20908 WFDC6-202ENST00000372670 620 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
COL5A1P20908 BPY2-202ENST00000382585 321 ntAPPRIS P5 TSL 1 (best) BASIC4.29□□□□□ -1.72
COL5A1P20908 EI24P3-201ENST00000399046 1062 ntBASIC4.29□□□□□ -1.72
COL5A1P20908 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
COL5A1P20908 AL031767.1-201ENST00000426374 386 ntTSL 5 BASIC4.29□□□□□ -1.72
COL5A1P20908 GCA-203ENST00000429691 824 ntTSL 3 BASIC4.29□□□□□ -1.72
COL5A1P20908 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC4.29□□□□□ -1.72
COL5A1P20908 RN7SL339P-201ENST00000580597 296 ntBASIC4.29□□□□□ -1.72
COL5A1P20908 AC090403.1-202ENST00000582108 833 ntTSL 3 BASIC4.29□□□□□ -1.72
COL5A1P20908 BPY2B-204ENST00000615850 321 ntAPPRIS P5 TSL 1 (best) BASIC4.29□□□□□ -1.72
COL5A1P20908 BPY2C-204ENST00000618574 321 ntAPPRIS P5 TSL 1 (best) BASIC4.29□□□□□ -1.72
COL5A1P20908 AC244100.1-202ENST00000621554 382 ntBASIC4.29□□□□□ -1.72
COL5A1P20908 DUSP19-202ENST00000354221 5176 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
COL5A1P20908 FAM26D-202ENST00000368597 1311 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
COL5A1P20908 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC4.29□□□□□ -1.72
COL5A1P20908 TRIM77-201ENST00000398290 1353 ntAPPRIS P1 TSL 5 BASIC4.29□□□□□ -1.72
COL5A1P20908 FSBP-203ENST00000611249 2181 ntAPPRIS P1 TSL 5 BASIC4.29□□□□□ -1.72
COL5A1P20908 INPP4B-220ENST00000513000 8831 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
COL5A1P20908 AC027228.2-201ENST00000567141 2154 ntBASIC4.28□□□□□ -1.72
COL5A1P20908 AL158837.1-201ENST00000417644 452 ntTSL 2 BASIC4.28□□□□□ -1.72
COL5A1P20908 AC114495.1-201ENST00000441274 436 ntBASIC4.28□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 72.2 ms