Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 ERBIN-208ENST00000506030 4386 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
LHX3Q9UBR4 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC4.68□□□□□ -1.66
LHX3Q9UBR4 HSPA8P17-201ENST00000427029 1382 ntBASIC4.68□□□□□ -1.66
LHX3Q9UBR4 ZNF28-204ENST00000457749 4556 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
LHX3Q9UBR4 WDR63-203ENST00000370596 2905 ntAPPRIS ALT2 TSL 5 BASIC4.68□□□□□ -1.66
LHX3Q9UBR4 SCN11A-202ENST00000444237 5729 ntAPPRIS ALT2 TSL 5 BASIC4.68□□□□□ -1.66
LHX3Q9UBR4 RAD17-220ENST00000616683 3057 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
LHX3Q9UBR4 STX3-208ENST00000641815 3236 ntBASIC4.68□□□□□ -1.66
LHX3Q9UBR4 FKBP7-204ENST00000424785 2834 ntAPPRIS P3 TSL 1 (best) BASIC4.68□□□□□ -1.66
LHX3Q9UBR4 C10orf120-201ENST00000329446 1064 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
LHX3Q9UBR4 OR13G1-201ENST00000359688 1046 ntAPPRIS P1 BASIC4.68□□□□□ -1.66
LHX3Q9UBR4 RNA5SP332-201ENST00000391063 115 ntBASIC4.68□□□□□ -1.66
LHX3Q9UBR4 AC002524.1-201ENST00000411687 547 ntBASIC4.68□□□□□ -1.66
LHX3Q9UBR4 FLJ27354-201ENST00000415584 788 ntTSL 2 BASIC4.68□□□□□ -1.66
LHX3Q9UBR4 AL645465.1-201ENST00000417765 642 ntTSL 3 BASIC4.68□□□□□ -1.66
LHX3Q9UBR4 AL627224.1-201ENST00000448334 444 ntBASIC4.68□□□□□ -1.66
LHX3Q9UBR4 HGF-207ENST00000453018 721 ntTSL 3 BASIC4.68□□□□□ -1.66
LHX3Q9UBR4 RPL5P13-201ENST00000462840 709 ntBASIC4.68□□□□□ -1.66
LHX3Q9UBR4 DAP3-209ENST00000465375 729 ntTSL 2 BASIC4.68□□□□□ -1.66
LHX3Q9UBR4 OR52A4P-201ENST00000472867 958 ntBASIC4.68□□□□□ -1.66
LHX3Q9UBR4 AC098799.3-201ENST00000506095 438 ntBASIC4.68□□□□□ -1.66
LHX3Q9UBR4 AC097512.1-203ENST00000506425 957 ntTSL 3 BASIC4.68□□□□□ -1.66
LHX3Q9UBR4 AC016550.3-201ENST00000515706 767 ntBASIC4.68□□□□□ -1.66
LHX3Q9UBR4 AL355432.1-201ENST00000522960 564 ntTSL 3 BASIC4.68□□□□□ -1.66
LHX3Q9UBR4 AP001781.1-201ENST00000530977 207 ntBASIC4.68□□□□□ -1.66
LHX3Q9UBR4 OR8X1P-201ENST00000534542 869 ntBASIC4.68□□□□□ -1.66
LHX3Q9UBR4 SP2-AS1-204ENST00000585280 405 ntTSL 3 BASIC4.68□□□□□ -1.66
LHX3Q9UBR4 AC004596.1-201ENST00000586560 528 ntTSL 3 BASIC4.68□□□□□ -1.66
LHX3Q9UBR4 AP004372.1-201ENST00000604842 844 ntBASIC4.68□□□□□ -1.66
LHX3Q9UBR4 AC012467.1-201ENST00000607740 256 ntBASIC4.68□□□□□ -1.66
LHX3Q9UBR4 AC107419.1-202ENST00000608735 1081 ntTSL 3 BASIC4.68□□□□□ -1.66
LHX3Q9UBR4 MIR8069-1-201ENST00000616627 86 ntBASIC4.68□□□□□ -1.66
LHX3Q9UBR4 AC074276.2-201ENST00000619891 348 ntBASIC4.68□□□□□ -1.66
LHX3Q9UBR4 ZNF479-203ENST00000620639 1239 ntTSL 5 BASIC4.68□□□□□ -1.66
LHX3Q9UBR4 MIR8069-2-201ENST00000621412 86 ntBASIC4.68□□□□□ -1.66
LHX3Q9UBR4 IPCEF1-203ENST00000422970 3267 ntAPPRIS ALT2 TSL 1 (best) BASIC4.68□□□□□ -1.66
LHX3Q9UBR4 ZBTB38-201ENST00000321464 3588 ntAPPRIS P1 BASIC4.68□□□□□ -1.66
LHX3Q9UBR4 CYP3A43-204ENST00000354829 1709 ntAPPRIS ALT1 TSL 1 (best) BASIC4.68□□□□□ -1.66
LHX3Q9UBR4 AASDH-202ENST00000451613 3182 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
LHX3Q9UBR4 KIAA1456-203ENST00000524591 9587 ntAPPRIS P1 TSL 5 BASIC4.68□□□□□ -1.66
LHX3Q9UBR4 AC008079.2-201ENST00000623543 20396 ntBASIC4.68□□□□□ -1.66
LHX3Q9UBR4 ANK3-202ENST00000355288 3811 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
LHX3Q9UBR4 SERPINA7-202ENST00000372563 1600 ntAPPRIS P1 TSL 5 BASIC4.68□□□□□ -1.66
LHX3Q9UBR4 AL355306.2-205ENST00000635395 1646 ntTSL 5 BASIC4.68□□□□□ -1.66
LHX3Q9UBR4 SPATA2P1-201ENST00000431223 2055 ntBASIC4.68□□□□□ -1.66
LHX3Q9UBR4 DCN-201ENST00000052754 7156 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
LHX3Q9UBR4 CDC23-202ENST00000394886 3155 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
LHX3Q9UBR4 ZNF382-204ENST00000439428 2742 ntAPPRIS ALT2 TSL 1 (best) BASIC4.67□□□□□ -1.66
LHX3Q9UBR4 ROS1-201ENST00000368507 7417 ntAPPRIS ALT2 TSL 5 BASIC4.67□□□□□ -1.66
LHX3Q9UBR4 TTC39DP-201ENST00000416781 1688 ntBASIC4.67□□□□□ -1.66
LHX3Q9UBR4 CYP3A43-203ENST00000342499 1396 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
LHX3Q9UBR4 Z98755.1-201ENST00000407015 1384 ntBASIC4.67□□□□□ -1.66
LHX3Q9UBR4 SALL4P2-201ENST00000423288 2910 ntBASIC4.67□□□□□ -1.66
LHX3Q9UBR4 MARCH1-202ENST00000339875 2476 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
LHX3Q9UBR4 MAP3K20-202ENST00000375213 3741 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
LHX3Q9UBR4 ANKRD34C-201ENST00000421388 4951 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
LHX3Q9UBR4 STAMBPL1-202ENST00000371924 2208 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
LHX3Q9UBR4 SCN1A-218ENST00000640036 8131 ntAPPRIS ALT1 TSL 5 BASIC4.67□□□□□ -1.66
LHX3Q9UBR4 DNAJC12-201ENST00000225171 1201 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
LHX3Q9UBR4 OR4K15-201ENST00000305051 1216 ntBASIC4.67□□□□□ -1.66
LHX3Q9UBR4 SNORA27.3-201ENST00000364937 134 ntBASIC4.67□□□□□ -1.66
LHX3Q9UBR4 SNORA71.2-201ENST00000364941 134 ntBASIC4.67□□□□□ -1.66
LHX3Q9UBR4 TRPM3-206ENST00000377097 554 ntTSL 2 BASIC4.67□□□□□ -1.66
LHX3Q9UBR4 MIR659-201ENST00000384963 97 ntBASIC4.67□□□□□ -1.66
LHX3Q9UBR4 RNU6ATAC5P-201ENST00000388104 126 ntBASIC4.67□□□□□ -1.66
LHX3Q9UBR4 TRAJ4-201ENST00000390533 63 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
LHX3Q9UBR4 Z98745.1-201ENST00000402553 494 ntBASIC4.67□□□□□ -1.66
LHX3Q9UBR4 AL590806.1-201ENST00000415818 853 ntBASIC4.67□□□□□ -1.66
LHX3Q9UBR4 AL121885.1-201ENST00000417957 451 ntTSL 3 BASIC4.67□□□□□ -1.66
LHX3Q9UBR4 RPA2P2-201ENST00000419698 796 ntBASIC4.67□□□□□ -1.66
LHX3Q9UBR4 AL158166.2-201ENST00000420845 748 ntTSL 2 BASIC4.67□□□□□ -1.66
LHX3Q9UBR4 RPL36AP10-201ENST00000421785 322 ntBASIC4.67□□□□□ -1.66
LHX3Q9UBR4 LINC00502-201ENST00000423621 445 ntTSL 3 BASIC4.67□□□□□ -1.66
LHX3Q9UBR4 CASP12-208ENST00000448103 1071 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
LHX3Q9UBR4 ISCUP1-201ENST00000454451 448 ntBASIC4.67□□□□□ -1.66
LHX3Q9UBR4 AL356289.2-201ENST00000455238 292 ntTSL 5 BASIC4.67□□□□□ -1.66
LHX3Q9UBR4 PTCHD1-AS-201ENST00000455399 718 ntTSL 3 BASIC4.67□□□□□ -1.66
LHX3Q9UBR4 RNU6ATAC28P-201ENST00000459249 118 ntBASIC4.67□□□□□ -1.66
LHX3Q9UBR4 RN7SL738P-201ENST00000470264 297 ntBASIC4.67□□□□□ -1.66
LHX3Q9UBR4 SLC9A9-AS1-201ENST00000479030 518 ntTSL 5 BASIC4.67□□□□□ -1.66
LHX3Q9UBR4 CASP12-210ENST00000494737 961 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
LHX3Q9UBR4 AC021087.2-201ENST00000504656 1203 ntBASIC4.67□□□□□ -1.66
LHX3Q9UBR4 AC093720.1-201ENST00000505681 714 ntBASIC4.67□□□□□ -1.66
LHX3Q9UBR4 AC008592.2-201ENST00000506070 571 ntTSL 3 BASIC4.67□□□□□ -1.66
LHX3Q9UBR4 AC111000.3-201ENST00000508057 576 ntBASIC4.67□□□□□ -1.66
LHX3Q9UBR4 AC083795.2-201ENST00000510034 610 ntTSL 3 BASIC4.67□□□□□ -1.66
LHX3Q9UBR4 RPS27AP18-201ENST00000515536 459 ntBASIC4.67□□□□□ -1.66
LHX3Q9UBR4 RNA5SP228-201ENST00000516232 133 ntBASIC4.67□□□□□ -1.66
LHX3Q9UBR4 MTCYBP19-201ENST00000517463 1124 ntBASIC4.67□□□□□ -1.66
LHX3Q9UBR4 AP002812.2-201ENST00000525594 585 ntTSL 4 BASIC4.67□□□□□ -1.66
LHX3Q9UBR4 AP001318.3-202ENST00000528876 509 ntTSL 3 BASIC4.67□□□□□ -1.66
LHX3Q9UBR4 AC095350.2-201ENST00000544034 201 ntTSL 5 BASIC4.67□□□□□ -1.66
LHX3Q9UBR4 CD24P2-201ENST00000565486 219 ntBASIC4.67□□□□□ -1.66
LHX3Q9UBR4 AC068020.1-201ENST00000594215 661 ntBASIC4.67□□□□□ -1.66
LHX3Q9UBR4 AC092316.1-201ENST00000598703 297 ntTSL 5 BASIC4.67□□□□□ -1.66
LHX3Q9UBR4 AC239803.2-201ENST00000610161 430 ntBASIC4.67□□□□□ -1.66
LHX3Q9UBR4 OR4K15-202ENST00000641512 1216 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
LHX3Q9UBR4 AL391684.1-202ENST00000641293 1636 ntBASIC4.67□□□□□ -1.66
LHX3Q9UBR4 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC4.67□□□□□ -1.66
LHX3Q9UBR4 XKR4-201ENST00000327381 19880 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 146.6 ms