Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 FAM237A-201ENST00000441223 773 ntAPPRIS P1 TSL 2 BASIC4.37□□□□□ -1.71
NKX3-1Q99801 GTF3AP5-201ENST00000442645 697 ntBASIC4.37□□□□□ -1.71
NKX3-1Q99801 AL732323.1-201ENST00000445897 456 ntTSL 3 BASIC4.37□□□□□ -1.71
NKX3-1Q99801 RN7SL172P-201ENST00000460535 303 ntBASIC4.37□□□□□ -1.71
NKX3-1Q99801 B4GALT4-AS1-201ENST00000470790 544 ntTSL 5 BASIC4.37□□□□□ -1.71
NKX3-1Q99801 RPL7AP10-201ENST00000481016 791 ntBASIC4.37□□□□□ -1.71
NKX3-1Q99801 RN7SL346P-201ENST00000491561 294 ntBASIC4.37□□□□□ -1.71
NKX3-1Q99801 LINC00613-201ENST00000504365 467 ntTSL 3 BASIC4.37□□□□□ -1.71
NKX3-1Q99801 AC108120.2-201ENST00000512973 294 ntBASIC4.37□□□□□ -1.71
NKX3-1Q99801 COMMD10-206ENST00000515539 869 ntTSL 3 BASIC4.37□□□□□ -1.71
NKX3-1Q99801 AC012400.1-201ENST00000518452 381 ntBASIC4.37□□□□□ -1.71
NKX3-1Q99801 AC009446.1-202ENST00000521131 473 ntTSL 3 BASIC4.37□□□□□ -1.71
NKX3-1Q99801 AC079209.1-202ENST00000521953 522 ntTSL 3 BASIC4.37□□□□□ -1.71
NKX3-1Q99801 AC018442.3-201ENST00000523025 183 ntBASIC4.37□□□□□ -1.71
NKX3-1Q99801 AP001267.3-202ENST00000525992 448 ntTSL 3 BASIC4.37□□□□□ -1.71
NKX3-1Q99801 AP003066.2-201ENST00000529375 555 ntBASIC4.37□□□□□ -1.71
NKX3-1Q99801 ASB8-215ENST00000540782 659 ntTSL 3 BASIC4.37□□□□□ -1.71
NKX3-1Q99801 AL121852.1-201ENST00000554665 430 ntTSL 3 BASIC4.37□□□□□ -1.71
NKX3-1Q99801 LINC02274-201ENST00000555539 1174 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
NKX3-1Q99801 C15orf41-203ENST00000562489 715 ntTSL 2 BASIC4.37□□□□□ -1.71
NKX3-1Q99801 CMC2-208ENST00000564249 890 ntAPPRIS P1 TSL 5 BASIC4.37□□□□□ -1.71
NKX3-1Q99801 MIR4675-201ENST00000577898 77 ntBASIC4.37□□□□□ -1.71
NKX3-1Q99801 EIF1P5-201ENST00000585002 234 ntBASIC4.37□□□□□ -1.71
NKX3-1Q99801 AC012254.4-201ENST00000588843 273 ntBASIC4.37□□□□□ -1.71
NKX3-1Q99801 AC002128.2-201ENST00000604161 618 ntTSL 5 BASIC4.37□□□□□ -1.71
NKX3-1Q99801 AC026979.4-201ENST00000606555 645 ntBASIC4.37□□□□□ -1.71
NKX3-1Q99801 AC242426.3-203ENST00000606757 712 ntTSL 3 BASIC4.37□□□□□ -1.71
NKX3-1Q99801 SSX9-202ENST00000608568 580 ntTSL 4 BASIC4.37□□□□□ -1.71
NKX3-1Q99801 AL353770.4-201ENST00000614936 468 ntTSL 5 BASIC4.37□□□□□ -1.71
NKX3-1Q99801 AL590491.2-203ENST00000614969 468 ntTSL 4 BASIC4.37□□□□□ -1.71
NKX3-1Q99801 AC015914.2-201ENST00000618167 288 ntBASIC4.37□□□□□ -1.71
NKX3-1Q99801 WWOX-217ENST00000620008 450 ntTSL 2 BASIC4.37□□□□□ -1.71
NKX3-1Q99801 AL161616.2-201ENST00000622001 565 ntTSL 4 BASIC4.37□□□□□ -1.71
NKX3-1Q99801 AP001005.3-201ENST00000622049 129 ntBASIC4.37□□□□□ -1.71
NKX3-1Q99801 AC011815.3-201ENST00000624194 473 ntBASIC4.37□□□□□ -1.71
NKX3-1Q99801 RNF123-214ENST00000629802 207 ntTSL 5 BASIC4.37□□□□□ -1.71
NKX3-1Q99801 AC099654.8-201ENST00000637757 681 ntBASIC4.37□□□□□ -1.71
NKX3-1Q99801 METTL8-218ENST00000638989 876 ntTSL 5 BASIC4.37□□□□□ -1.71
NKX3-1Q99801 METTL8-219ENST00000640734 726 ntTSL 2 BASIC4.37□□□□□ -1.71
NKX3-1Q99801 DMXL2-203ENST00000543779 10400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.37□□□□□ -1.71
NKX3-1Q99801 PLCB4-203ENST00000378493 5796 ntAPPRIS ALT1 TSL 2 BASIC4.37□□□□□ -1.71
NKX3-1Q99801 INPP4B-220ENST00000513000 8831 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
NKX3-1Q99801 MOCS2-203ENST00000450852 1337 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
NKX3-1Q99801 AC008432.1-201ENST00000615912 1320 ntBASIC4.37□□□□□ -1.71
NKX3-1Q99801 PAK3-213ENST00000620137 2130 ntTSL 5 BASIC4.37□□□□□ -1.71
NKX3-1Q99801 TNFAIP8-207ENST00000513374 1385 ntTSL 2 BASIC4.37□□□□□ -1.71
NKX3-1Q99801 GABRA2-211ENST00000514090 3401 ntAPPRIS P1 TSL 5 BASIC4.37□□□□□ -1.71
NKX3-1Q99801 MYBPC1-204ENST00000452455 3861 ntAPPRIS ALT2 TSL 2 BASIC4.37□□□□□ -1.71
NKX3-1Q99801 IL1R1-204ENST00000409929 1858 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
NKX3-1Q99801 TSPAN8-202ENST00000393330 1516 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
NKX3-1Q99801 OSBPL11-201ENST00000296220 4191 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
NKX3-1Q99801 DLG1-210ENST00000422288 2854 ntTSL 5 BASIC4.36□□□□□ -1.71
NKX3-1Q99801 ART3-203ENST00000355810 1561 ntAPPRIS ALT2 TSL 1 (best) BASIC4.36□□□□□ -1.71
NKX3-1Q99801 LINC02476-201ENST00000426413 1577 ntTSL 2 BASIC4.36□□□□□ -1.71
NKX3-1Q99801 TM4SF1-202ENST00000472441 3115 ntTSL 2 BASIC4.36□□□□□ -1.71
NKX3-1Q99801 RNU6-354P-201ENST00000383862 107 ntBASIC4.36□□□□□ -1.71
NKX3-1Q99801 RNU6-610P-201ENST00000384264 107 ntBASIC4.36□□□□□ -1.71
NKX3-1Q99801 SNORA70.10-201ENST00000384515 134 ntBASIC4.36□□□□□ -1.71
NKX3-1Q99801 TRAV9-1-201ENST00000390431 338 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
NKX3-1Q99801 TRAJ4-201ENST00000390533 63 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
NKX3-1Q99801 RNU6-1000P-201ENST00000391066 106 ntBASIC4.36□□□□□ -1.71
NKX3-1Q99801 AF015720.1-201ENST00000412240 349 ntTSL 3 BASIC4.36□□□□□ -1.71
NKX3-1Q99801 AL024507.1-201ENST00000412741 274 ntBASIC4.36□□□□□ -1.71
NKX3-1Q99801 ATP6V1G1P7-201ENST00000415853 349 ntBASIC4.36□□□□□ -1.71
NKX3-1Q99801 PNRC2P1-201ENST00000423940 420 ntBASIC4.36□□□□□ -1.71
NKX3-1Q99801 DPY19L1P2-201ENST00000426647 915 ntBASIC4.36□□□□□ -1.71
NKX3-1Q99801 LYPLA1P1-201ENST00000434514 622 ntBASIC4.36□□□□□ -1.71
NKX3-1Q99801 AC073052.1-201ENST00000440417 714 ntBASIC4.36□□□□□ -1.71
NKX3-1Q99801 TXNP5-201ENST00000441043 315 ntBASIC4.36□□□□□ -1.71
NKX3-1Q99801 TTTY22-201ENST00000445253 427 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
NKX3-1Q99801 AL161629.1-201ENST00000446201 457 ntTSL 3 BASIC4.36□□□□□ -1.71
NKX3-1Q99801 AL356421.2-201ENST00000446733 197 ntTSL 3 BASIC4.36□□□□□ -1.71
NKX3-1Q99801 AC068492.1-201ENST00000448672 469 ntTSL 3 BASIC4.36□□□□□ -1.71
NKX3-1Q99801 AL592431.1-201ENST00000451090 317 ntTSL 3 BASIC4.36□□□□□ -1.71
NKX3-1Q99801 AC073636.1-202ENST00000457756 558 ntTSL 4 BASIC4.36□□□□□ -1.71
NKX3-1Q99801 RPS20P4-201ENST00000461659 355 ntBASIC4.36□□□□□ -1.71
NKX3-1Q99801 RPL21P18-201ENST00000469899 480 ntBASIC4.36□□□□□ -1.71
NKX3-1Q99801 AC092957.1-201ENST00000473299 570 ntTSL 4 BASIC4.36□□□□□ -1.71
NKX3-1Q99801 AC090686.1-201ENST00000481577 749 ntBASIC4.36□□□□□ -1.71
NKX3-1Q99801 ENSA-211ENST00000503345 793 ntTSL 3 BASIC4.36□□□□□ -1.71
NKX3-1Q99801 AC096576.3-201ENST00000505528 721 ntTSL 5 BASIC4.36□□□□□ -1.71
NKX3-1Q99801 AC008592.2-201ENST00000506070 571 ntTSL 3 BASIC4.36□□□□□ -1.71
NKX3-1Q99801 LINC02039-201ENST00000507428 566 ntTSL 4 BASIC4.36□□□□□ -1.71
NKX3-1Q99801 HMGB3P16-201ENST00000508037 287 ntBASIC4.36□□□□□ -1.71
NKX3-1Q99801 AC147055.3-201ENST00000510547 851 ntBASIC4.36□□□□□ -1.71
NKX3-1Q99801 RPS3A-210ENST00000512690 845 ntTSL 3 BASIC4.36□□□□□ -1.71
NKX3-1Q99801 RNA5SP303-201ENST00000516192 130 ntBASIC4.36□□□□□ -1.71
NKX3-1Q99801 RNU6-415P-201ENST00000516252 97 ntBASIC4.36□□□□□ -1.71
NKX3-1Q99801 CHCHD7-209ENST00000519367 442 ntTSL 3 BASIC4.36□□□□□ -1.71
NKX3-1Q99801 AC246817.2-206ENST00000520570 582 ntTSL 4 BASIC4.36□□□□□ -1.71
NKX3-1Q99801 AC087664.1-201ENST00000521456 358 ntTSL 3 BASIC4.36□□□□□ -1.71
NKX3-1Q99801 HMMR-AS1-202ENST00000521666 800 ntTSL 2 BASIC4.36□□□□□ -1.71
NKX3-1Q99801 AC009554.1-201ENST00000559251 399 ntTSL 5 BASIC4.36□□□□□ -1.71
NKX3-1Q99801 AC106734.1-201ENST00000568646 663 ntBASIC4.36□□□□□ -1.71
NKX3-1Q99801 AC010761.5-201ENST00000579468 287 ntTSL 3 BASIC4.36□□□□□ -1.71
NKX3-1Q99801 AC006504.7-201ENST00000592806 924 ntTSL 3 BASIC4.36□□□□□ -1.71
NKX3-1Q99801 AC092316.1-201ENST00000598703 297 ntTSL 5 BASIC4.36□□□□□ -1.71
NKX3-1Q99801 AC018695.5-201ENST00000605872 315 ntBASIC4.36□□□□□ -1.71
NKX3-1Q99801 AL021707.7-201ENST00000607991 416 ntBASIC4.36□□□□□ -1.71
NKX3-1Q99801 AC097504.2-201ENST00000608088 454 ntBASIC4.36□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 112.8 ms