Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 AL035404.2-201ENST00000424418 304 ntTSL 3 BASIC4.8□□□□□ -1.64
NUP54Q7Z3B4 AC009238.2-201ENST00000431026 355 ntBASIC4.8□□□□□ -1.64
NUP54Q7Z3B4 LINC01378-202ENST00000437514 783 ntTSL 3 BASIC4.8□□□□□ -1.64
NUP54Q7Z3B4 NOP56P2-201ENST00000447491 769 ntBASIC4.8□□□□□ -1.64
NUP54Q7Z3B4 MYO5BP2-201ENST00000449815 1277 ntBASIC4.8□□□□□ -1.64
NUP54Q7Z3B4 AL162388.1-201ENST00000450912 352 ntBASIC4.8□□□□□ -1.64
NUP54Q7Z3B4 AL589703.1-201ENST00000456032 256 ntTSL 5 BASIC4.8□□□□□ -1.64
NUP54Q7Z3B4 EIF2S2P5-201ENST00000457635 968 ntBASIC4.8□□□□□ -1.64
NUP54Q7Z3B4 AC021660.1-201ENST00000465006 554 ntBASIC4.8□□□□□ -1.64
NUP54Q7Z3B4 AC009127.1-201ENST00000467090 155 ntBASIC4.8□□□□□ -1.64
NUP54Q7Z3B4 RN7SL205P-201ENST00000490174 284 ntBASIC4.8□□□□□ -1.64
NUP54Q7Z3B4 LINC01339-201ENST00000505712 440 ntTSL 2 BASIC4.8□□□□□ -1.64
NUP54Q7Z3B4 AC126768.1-201ENST00000511698 490 ntTSL 3 BASIC4.8□□□□□ -1.64
NUP54Q7Z3B4 AC093305.1-201ENST00000514105 522 ntTSL 5 BASIC4.8□□□□□ -1.64
NUP54Q7Z3B4 AC112206.4-201ENST00000515142 405 ntBASIC4.8□□□□□ -1.64
NUP54Q7Z3B4 RBPMS-207ENST00000519647 780 ntTSL 5 BASIC4.8□□□□□ -1.64
NUP54Q7Z3B4 AC113192.3-201ENST00000529152 742 ntBASIC4.8□□□□□ -1.64
NUP54Q7Z3B4 TSPAN19-204ENST00000532498 998 ntAPPRIS P1 TSL 5 BASIC4.8□□□□□ -1.64
NUP54Q7Z3B4 PRR4-212ENST00000544994 326 ntAPPRIS ALT2 TSL 1 (best) BASIC4.8□□□□□ -1.64
NUP54Q7Z3B4 AC006511.5-202ENST00000546339 1198 ntTSL 5 BASIC4.8□□□□□ -1.64
NUP54Q7Z3B4 AC026116.1-201ENST00000551729 474 ntTSL 3 BASIC4.8□□□□□ -1.64
NUP54Q7Z3B4 LINC01580-201ENST00000555255 561 ntTSL 4 BASIC4.8□□□□□ -1.64
NUP54Q7Z3B4 AC006349.1-201ENST00000555526 235 ntBASIC4.8□□□□□ -1.64
NUP54Q7Z3B4 AC087477.3-201ENST00000559214 552 ntTSL 4 BASIC4.8□□□□□ -1.64
NUP54Q7Z3B4 PDCD6IPP2-207ENST00000566321 1069 ntBASIC4.8□□□□□ -1.64
NUP54Q7Z3B4 AC015845.2-201ENST00000581805 472 ntTSL 2 BASIC4.8□□□□□ -1.64
NUP54Q7Z3B4 AP000919.3-201ENST00000582591 568 ntTSL 3 BASIC4.8□□□□□ -1.64
NUP54Q7Z3B4 SLC14A2-AS1-201ENST00000585759 494 ntTSL 3 BASIC4.8□□□□□ -1.64
NUP54Q7Z3B4 ZRANB2-AS2-212ENST00000590186 686 ntTSL 5 BASIC4.8□□□□□ -1.64
NUP54Q7Z3B4 AC243960.1-203ENST00000595395 599 ntTSL 4 BASIC4.8□□□□□ -1.64
NUP54Q7Z3B4 AC025175.1-201ENST00000606482 759 ntBASIC4.8□□□□□ -1.64
NUP54Q7Z3B4 DEC1-204ENST00000614246 210 ntAPPRIS ALT2 TSL 1 (best) BASIC4.8□□□□□ -1.64
NUP54Q7Z3B4 Metazoa_SRP.179-201ENST00000619020 241 ntBASIC4.8□□□□□ -1.64
NUP54Q7Z3B4 AC099494.2-201ENST00000623371 978 ntBASIC4.8□□□□□ -1.64
NUP54Q7Z3B4 AP003072.4-201ENST00000624580 310 ntBASIC4.8□□□□□ -1.64
NUP54Q7Z3B4 CU634019.2-201ENST00000625184 593 ntTSL 3 BASIC4.8□□□□□ -1.64
NUP54Q7Z3B4 SLC8A1-AS1-239ENST00000631142 623 ntTSL 5 BASIC4.8□□□□□ -1.64
NUP54Q7Z3B4 OR8B2-202ENST00000641451 1056 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
NUP54Q7Z3B4 ANK2-202ENST00000357077 14196 ntAPPRIS P3 TSL 1 (best) BASIC4.8□□□□□ -1.64
NUP54Q7Z3B4 SLC4A10-206ENST00000446997 5551 ntAPPRIS P4 TSL 1 (best) BASIC4.8□□□□□ -1.64
NUP54Q7Z3B4 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
NUP54Q7Z3B4 IBTK-206ENST00000503631 3560 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
NUP54Q7Z3B4 FTX-210ENST00000603037 8347 ntTSL 5 BASIC4.8□□□□□ -1.64
NUP54Q7Z3B4 PIGK-203ENST00000445065 4318 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
NUP54Q7Z3B4 DENND4A-201ENST00000431932 5875 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
NUP54Q7Z3B4 CFH-206ENST00000630130 1658 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
NUP54Q7Z3B4 KLF12-201ENST00000377669 10637 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
NUP54Q7Z3B4 ZNF33A-201ENST00000307441 6196 ntAPPRIS ALT2 TSL 4 BASIC4.79□□□□□ -1.64
NUP54Q7Z3B4 SLC15A2-201ENST00000295605 2379 ntTSL 2 BASIC4.79□□□□□ -1.64
NUP54Q7Z3B4 SAGE2P-201ENST00000420011 2126 ntBASIC4.79□□□□□ -1.64
NUP54Q7Z3B4 IRAK4-203ENST00000448290 1381 ntTSL 5 BASIC4.79□□□□□ -1.64
NUP54Q7Z3B4 ERVFRD-3-201ENST00000578561 1617 ntBASIC4.79□□□□□ -1.64
NUP54Q7Z3B4 OR4F5-202ENST00000641515 2618 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
NUP54Q7Z3B4 OBSCN-214ENST00000636875 23907 ntTSL 5 BASIC4.79□□□□□ -1.64
NUP54Q7Z3B4 AL139811.1-201ENST00000424779 2299 ntBASIC4.79□□□□□ -1.64
NUP54Q7Z3B4 SAMSN1-206ENST00000619120 2028 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
NUP54Q7Z3B4 PTPN13-202ENST00000411767 8119 ntAPPRIS ALT2 TSL 1 (best) BASIC4.79□□□□□ -1.64
NUP54Q7Z3B4 OR52B1P-201ENST00000316506 909 ntBASIC4.79□□□□□ -1.64
NUP54Q7Z3B4 RNASE9-201ENST00000338904 1049 ntAPPRIS P3 TSL 1 (best) BASIC4.79□□□□□ -1.64
NUP54Q7Z3B4 BX248415.1-201ENST00000367421 1043 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
NUP54Q7Z3B4 RCAN3-201ENST00000374393 382 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
NUP54Q7Z3B4 MIR1182-201ENST00000408363 97 ntBASIC4.79□□□□□ -1.64
NUP54Q7Z3B4 PRR21-201ENST00000408934 1170 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
NUP54Q7Z3B4 RNU4-34P-201ENST00000410431 124 ntBASIC4.79□□□□□ -1.64
NUP54Q7Z3B4 TATDN1P1-201ENST00000414123 891 ntBASIC4.79□□□□□ -1.64
NUP54Q7Z3B4 MORF4L2-205ENST00000423833 717 ntTSL 5 BASIC4.79□□□□□ -1.64
NUP54Q7Z3B4 LINC01740-201ENST00000423842 332 ntTSL 2 BASIC4.79□□□□□ -1.64
NUP54Q7Z3B4 AC005033.1-201ENST00000428904 813 ntBASIC4.79□□□□□ -1.64
NUP54Q7Z3B4 RPL39L-202ENST00000433055 749 ntAPPRIS P1 TSL 2 BASIC4.79□□□□□ -1.64
NUP54Q7Z3B4 AL121970.1-201ENST00000447557 929 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
NUP54Q7Z3B4 MTND2P8-201ENST00000450555 1025 ntBASIC4.79□□□□□ -1.64
NUP54Q7Z3B4 FAM104B-204ENST00000472571 1109 ntAPPRIS ALT2 TSL 1 (best) BASIC4.79□□□□□ -1.64
NUP54Q7Z3B4 RN7SL222P-201ENST00000476452 299 ntBASIC4.79□□□□□ -1.64
NUP54Q7Z3B4 AC015908.1-201ENST00000478739 476 ntBASIC4.79□□□□□ -1.64
NUP54Q7Z3B4 RN7SL214P-201ENST00000487317 265 ntBASIC4.79□□□□□ -1.64
NUP54Q7Z3B4 AC023050.1-201ENST00000498198 304 ntBASIC4.79□□□□□ -1.64
NUP54Q7Z3B4 AC025459.1-201ENST00000504072 156 ntBASIC4.79□□□□□ -1.64
NUP54Q7Z3B4 AC006499.3-201ENST00000506077 748 ntBASIC4.79□□□□□ -1.64
NUP54Q7Z3B4 AC079858.1-201ENST00000507842 448 ntTSL 3 BASIC4.79□□□□□ -1.64
NUP54Q7Z3B4 AC113167.1-201ENST00000512941 570 ntTSL 4 BASIC4.79□□□□□ -1.64
NUP54Q7Z3B4 RN7SKP141-201ENST00000516167 338 ntBASIC4.79□□□□□ -1.64
NUP54Q7Z3B4 UQCRB-209ENST00000523920 695 ntTSL 5 BASIC4.79□□□□□ -1.64
NUP54Q7Z3B4 AC114550.3-201ENST00000524073 579 ntTSL 4 BASIC4.79□□□□□ -1.64
NUP54Q7Z3B4 AP002812.4-201ENST00000532139 286 ntBASIC4.79□□□□□ -1.64
NUP54Q7Z3B4 AC055720.2-201ENST00000537724 172 ntTSL 3 BASIC4.79□□□□□ -1.64
NUP54Q7Z3B4 AC068775.2-201ENST00000539033 998 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
NUP54Q7Z3B4 RNASE9-206ENST00000554964 1101 ntAPPRIS P3 TSL 1 (best) BASIC4.79□□□□□ -1.64
NUP54Q7Z3B4 C15orf41-205ENST00000563167 772 ntTSL 3 BASIC4.79□□□□□ -1.64
NUP54Q7Z3B4 MIR762HG-201ENST00000564901 648 ntTSL 2 BASIC4.79□□□□□ -1.64
NUP54Q7Z3B4 AC012181.3-201ENST00000565861 601 ntTSL 4 BASIC4.79□□□□□ -1.64
NUP54Q7Z3B4 AC079070.1-201ENST00000578740 555 ntTSL 2 BASIC4.79□□□□□ -1.64
NUP54Q7Z3B4 PRPF19P1-201ENST00000584766 898 ntBASIC4.79□□□□□ -1.64
NUP54Q7Z3B4 AC015911.5-201ENST00000587076 451 ntBASIC4.79□□□□□ -1.64
NUP54Q7Z3B4 AC011473.1-201ENST00000601280 443 ntTSL 2 BASIC4.79□□□□□ -1.64
NUP54Q7Z3B4 AC120053.1-201ENST00000607706 736 ntBASIC4.79□□□□□ -1.64
NUP54Q7Z3B4 AL121612.2-201ENST00000612261 482 ntBASIC4.79□□□□□ -1.64
NUP54Q7Z3B4 AC118658.2-201ENST00000618697 459 ntBASIC4.79□□□□□ -1.64
NUP54Q7Z3B4 SHMT1-211ENST00000618902 378 ntTSL 5 BASIC4.79□□□□□ -1.64
NUP54Q7Z3B4 AASDH-201ENST00000205214 3590 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
NUP54Q7Z3B4 USP9YP4-201ENST00000424401 1745 ntBASIC4.79□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 81.7 ms