Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AC008126.1-201ENST00000549019 480 ntBASIC6□□□□□ -1.45
RNF4P78317 OR11H2-201ENST00000556246 948 ntAPPRIS P1 BASIC6□□□□□ -1.45
RNF4P78317 AL133279.2-201ENST00000556546 428 ntTSL 3 BASIC6□□□□□ -1.45
RNF4P78317 AC023905.1-201ENST00000559799 1178 ntTSL 2 BASIC6□□□□□ -1.45
RNF4P78317 MT1CP-201ENST00000567054 174 ntBASIC6□□□□□ -1.45
RNF4P78317 AC092683.1-203ENST00000594050 654 ntTSL 5 BASIC6□□□□□ -1.45
RNF4P78317 LINC01435-212ENST00000601212 742 ntTSL 5 BASIC6□□□□□ -1.45
RNF4P78317 AC011500.1-201ENST00000601963 469 ntBASIC6□□□□□ -1.45
RNF4P78317 AC008945.2-201ENST00000606056 604 ntBASIC6□□□□□ -1.45
RNF4P78317 STARD13-AS-239ENST00000609588 982 ntTSL 5 BASIC6□□□□□ -1.45
RNF4P78317 AP000894.4-201ENST00000610185 483 ntBASIC6□□□□□ -1.45
RNF4P78317 AL136097.3-201ENST00000611097 505 ntBASIC6□□□□□ -1.45
RNF4P78317 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC6□□□□□ -1.45
RNF4P78317 AL352984.2-202ENST00000613699 155 ntBASIC6□□□□□ -1.45
RNF4P78317 AC234782.5-201ENST00000617723 324 ntBASIC6□□□□□ -1.45
RNF4P78317 AC243756.2-201ENST00000618406 463 ntBASIC6□□□□□ -1.45
RNF4P78317 AC159540.2-206ENST00000619371 355 ntTSL 3 BASIC6□□□□□ -1.45
RNF4P78317 AC124864.2-201ENST00000624736 186 ntBASIC6□□□□□ -1.45
RNF4P78317 AC093591.3-201ENST00000634516 308 ntBASIC6□□□□□ -1.45
RNF4P78317 AL121936.2-201ENST00000641935 662 ntBASIC6□□□□□ -1.45
RNF4P78317 IQCA1-202ENST00000309507 3155 ntAPPRIS ALT2 TSL 2 BASIC6□□□□□ -1.45
RNF4P78317 ELMO1-207ENST00000442504 3154 ntAPPRIS P1 TSL 2 BASIC6□□□□□ -1.45
RNF4P78317 LINC01043-201ENST00000565936 6897 ntTSL 1 (best) BASIC6□□□□□ -1.45
RNF4P78317 AC010624.4-201ENST00000597606 1351 ntBASIC6□□□□□ -1.45
RNF4P78317 CSDE1-205ENST00000438362 4167 ntTSL 1 (best) BASIC6□□□□□ -1.45
RNF4P78317 DMD-228ENST00000541735 7080 ntTSL 5 BASIC6□□□□□ -1.45
RNF4P78317 GOLT1B-201ENST00000229314 3227 ntAPPRIS P2 TSL 1 (best) BASIC6□□□□□ -1.45
RNF4P78317 TMC1-201ENST00000297784 3201 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
RNF4P78317 CYP3A5-202ENST00000339843 3320 ntTSL 1 (best) BASIC6□□□□□ -1.45
RNF4P78317 NEDD9-202ENST00000379446 4536 ntAPPRIS P3 TSL 1 (best) BASIC6□□□□□ -1.45
RNF4P78317 TRPC4-204ENST00000379673 2760 ntTSL 1 (best) BASIC6□□□□□ -1.45
RNF4P78317 DLG2-207ENST00000398309 7890 ntTSL 1 (best) BASIC6□□□□□ -1.45
RNF4P78317 ODF2-205ENST00000393527 3653 ntTSL 1 (best) BASIC6□□□□□ -1.45
RNF4P78317 DCAF13P1-201ENST00000495256 1330 ntBASIC5.99□□□□□ -1.45
RNF4P78317 AC044839.1-206ENST00000635559 1324 ntTSL 5 BASIC5.99□□□□□ -1.45
RNF4P78317 MEIOC-202ENST00000409464 4067 ntAPPRIS ALT2 TSL 2 BASIC5.99□□□□□ -1.45
RNF4P78317 IGF2BP3-201ENST00000258729 4250 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
RNF4P78317 AL354685.2-201ENST00000448218 1447 ntBASIC5.99□□□□□ -1.45
RNF4P78317 SLC38A11-204ENST00000409662 1542 ntAPPRIS P2 TSL 1 (best) BASIC5.99□□□□□ -1.45
RNF4P78317 BNIP2-202ENST00000415213 1509 ntTSL 2 BASIC5.99□□□□□ -1.45
RNF4P78317 LINC01138-208ENST00000639159 1521 ntTSL 5 BASIC5.99□□□□□ -1.45
RNF4P78317 SAGE3P-201ENST00000619800 1635 ntBASIC5.99□□□□□ -1.45
RNF4P78317 DMXL1-215ENST00000539542 11236 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
RNF4P78317 AC007996.1-201ENST00000620414 2821 ntBASIC5.99□□□□□ -1.45
RNF4P78317 OR1A1-203ENST00000641732 3832 ntAPPRIS P1 BASIC5.99□□□□□ -1.45
RNF4P78317 DPCR1-202ENST00000462446 5314 ntAPPRIS P2 TSL 5 BASIC5.99□□□□□ -1.45
RNF4P78317 NUMB-204ENST00000535282 3198 ntAPPRIS ALT1 TSL 5 BASIC5.99□□□□□ -1.45
RNF4P78317 FASTKD1-204ENST00000453153 2967 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
RNF4P78317 DDX6-207ENST00000617381 2883 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
RNF4P78317 ZNF253-201ENST00000355650 2268 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
RNF4P78317 ATMIN-204ENST00000564241 4803 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
RNF4P78317 PCLO-203ENST00000423517 17147 ntTSL 5 BASIC5.99□□□□□ -1.45
RNF4P78317 DSCR8-201ENST00000357704 552 ntAPPRIS P5 TSL 2 BASIC5.99□□□□□ -1.45
RNF4P78317 Y_RNA.9-201ENST00000362354 101 ntBASIC5.99□□□□□ -1.45
RNF4P78317 SNORD35A-201ENST00000363389 86 ntBASIC5.99□□□□□ -1.45
RNF4P78317 RN7SKP250-201ENST00000363924 321 ntBASIC5.99□□□□□ -1.45
RNF4P78317 AL050335.1-201ENST00000396909 869 ntBASIC5.99□□□□□ -1.45
RNF4P78317 RPS3AP36-201ENST00000398190 775 ntBASIC5.99□□□□□ -1.45
RNF4P78317 DSCR8-202ENST00000400477 534 ntAPPRIS ALT2 TSL 1 (best) BASIC5.99□□□□□ -1.45
RNF4P78317 AL590002.1-201ENST00000406554 418 ntBASIC5.99□□□□□ -1.45
RNF4P78317 FCF1P10-201ENST00000407590 479 ntBASIC5.99□□□□□ -1.45
RNF4P78317 AL450338.1-201ENST00000407987 512 ntBASIC5.99□□□□□ -1.45
RNF4P78317 AL354733.1-204ENST00000412069 424 ntTSL 5 BASIC5.99□□□□□ -1.45
RNF4P78317 FCF1P2-201ENST00000415284 583 ntBASIC5.99□□□□□ -1.45
RNF4P78317 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC5.99□□□□□ -1.45
RNF4P78317 LINC01393-201ENST00000419905 746 ntTSL 2 BASIC5.99□□□□□ -1.45
RNF4P78317 AL953862.1-201ENST00000423016 168 ntBASIC5.99□□□□□ -1.45
RNF4P78317 AC073335.1-201ENST00000427776 363 ntBASIC5.99□□□□□ -1.45
RNF4P78317 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC5.99□□□□□ -1.45
RNF4P78317 HMGB3P10-201ENST00000434734 572 ntBASIC5.99□□□□□ -1.45
RNF4P78317 RPL7P36-201ENST00000444633 681 ntBASIC5.99□□□□□ -1.45
RNF4P78317 PSPHP1-201ENST00000450062 261 ntBASIC5.99□□□□□ -1.45
RNF4P78317 SNRPFP4-201ENST00000456366 242 ntBASIC5.99□□□□□ -1.45
RNF4P78317 AP002884.1-201ENST00000479691 655 ntBASIC5.99□□□□□ -1.45
RNF4P78317 LINC02360-201ENST00000506195 657 ntTSL 3 BASIC5.99□□□□□ -1.45
RNF4P78317 AC091965.3-201ENST00000506236 208 ntBASIC5.99□□□□□ -1.45
RNF4P78317 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC5.99□□□□□ -1.45
RNF4P78317 RNA5SP418-201ENST00000515951 117 ntBASIC5.99□□□□□ -1.45
RNF4P78317 IGHV7-34-1-201ENST00000519200 350 ntBASIC5.99□□□□□ -1.45
RNF4P78317 AF181450.1-201ENST00000522980 410 ntTSL 3 BASIC5.99□□□□□ -1.45
RNF4P78317 AP000842.2-202ENST00000526211 569 ntTSL 4 BASIC5.99□□□□□ -1.45
RNF4P78317 AC069208.1-201ENST00000540811 676 ntTSL 4 BASIC5.99□□□□□ -1.45
RNF4P78317 CFL2-206ENST00000556161 546 ntTSL 4 BASIC5.99□□□□□ -1.45
RNF4P78317 CYCSP2-201ENST00000558168 301 ntBASIC5.99□□□□□ -1.45
RNF4P78317 AC012146.1-204ENST00000570712 426 ntTSL 3 BASIC5.99□□□□□ -1.45
RNF4P78317 AC137800.2-201ENST00000574375 120 ntBASIC5.99□□□□□ -1.45
RNF4P78317 AC211486.2-201ENST00000576046 280 ntTSL 3 BASIC5.99□□□□□ -1.45
RNF4P78317 AC026898.1-201ENST00000586404 571 ntBASIC5.99□□□□□ -1.45
RNF4P78317 AL157938.2-201ENST00000587264 894 ntTSL 5 BASIC5.99□□□□□ -1.45
RNF4P78317 AC025278.1-201ENST00000593558 515 ntTSL 2 BASIC5.99□□□□□ -1.45
RNF4P78317 BNIP3P8-201ENST00000597863 560 ntBASIC5.99□□□□□ -1.45
RNF4P78317 SOX9-AS1-216ENST00000602213 821 ntTSL 5 BASIC5.99□□□□□ -1.45
RNF4P78317 AL161729.4-201ENST00000604650 476 ntBASIC5.99□□□□□ -1.45
RNF4P78317 AL355512.1-201ENST00000609514 488 ntTSL 5 BASIC5.99□□□□□ -1.45
RNF4P78317 GLYATL1-219ENST00000612196 909 ntAPPRIS ALT2 TSL 1 (best) BASIC5.99□□□□□ -1.45
RNF4P78317 ERC2-214ENST00000612797 3831 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
RNF4P78317 MIR6863-201ENST00000636112 90 ntBASIC5.99□□□□□ -1.45
RNF4P78317 AC005332.9-201ENST00000620266 2921 ntBASIC5.99□□□□□ -1.45
RNF4P78317 ZNF836-201ENST00000322146 2811 ntAPPRIS ALT2 TSL 5 BASIC5.99□□□□□ -1.45
RNF4P78317 AC068870.3-201ENST00000625077 2536 ntBASIC5.99□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 102 ms