Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AL354821.1-201ENST00000617598 809 ntTSL 3 BASIC4.24□□□□□ -1.73
FOXA1P55317 AC243829.4-201ENST00000620056 701 ntTSL 5 BASIC4.24□□□□□ -1.73
FOXA1P55317 CCL14-204ENST00000622526 472 ntTSL 3 BASIC4.24□□□□□ -1.73
FOXA1P55317 AC019278.1-201ENST00000623516 479 ntBASIC4.24□□□□□ -1.73
FOXA1P55317 AK9-202ENST00000355283 2499 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
FOXA1P55317 RACGAP1-202ENST00000427314 3229 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
FOXA1P55317 MLIP-213ENST00000514921 5743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.24□□□□□ -1.73
FOXA1P55317 RNF111-212ENST00000561186 4536 ntTSL 2 BASIC4.24□□□□□ -1.73
FOXA1P55317 OR2L5-201ENST00000355281 2429 ntAPPRIS P1 BASIC4.24□□□□□ -1.73
FOXA1P55317 NR1H5P-201ENST00000452683 1377 ntBASIC4.24□□□□□ -1.73
FOXA1P55317 PLCZ1-206ENST00000538330 1612 ntTSL 2 BASIC4.24□□□□□ -1.73
FOXA1P55317 SLC41A2-201ENST00000258538 4449 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
FOXA1P55317 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC4.24□□□□□ -1.73
FOXA1P55317 SLC10A7-202ENST00000394059 1730 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
FOXA1P55317 LUZP2-207ENST00000533227 5016 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
FOXA1P55317 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
FOXA1P55317 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
FOXA1P55317 BDNF-AS-202ENST00000499568 2039 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
FOXA1P55317 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC4.23□□□□□ -1.73
FOXA1P55317 AC099654.3-201ENST00000447087 1546 ntBASIC4.23□□□□□ -1.73
FOXA1P55317 BMPR2-201ENST00000374574 9683 ntTSL 2 BASIC4.23□□□□□ -1.73
FOXA1P55317 AC008033.1-201ENST00000216407 1162 ntBASIC4.23□□□□□ -1.73
FOXA1P55317 SNORD113.2-201ENST00000364166 89 ntBASIC4.23□□□□□ -1.73
FOXA1P55317 RPL31-204ENST00000409038 817 ntTSL 2 BASIC4.23□□□□□ -1.73
FOXA1P55317 RPL31-205ENST00000409320 716 ntAPPRIS ALT1 TSL 1 (best) BASIC4.23□□□□□ -1.73
FOXA1P55317 RPL31-206ENST00000409650 770 ntAPPRIS ALT1 TSL 2 BASIC4.23□□□□□ -1.73
FOXA1P55317 RPL7AP25-201ENST00000423357 805 ntBASIC4.23□□□□□ -1.73
FOXA1P55317 AL360081.1-201ENST00000428299 555 ntBASIC4.23□□□□□ -1.73
FOXA1P55317 AC006055.1-201ENST00000432423 411 ntTSL 3 BASIC4.23□□□□□ -1.73
FOXA1P55317 AC004875.1-201ENST00000432702 378 ntTSL 3 BASIC4.23□□□□□ -1.73
FOXA1P55317 FTH1P16-201ENST00000435241 552 ntBASIC4.23□□□□□ -1.73
FOXA1P55317 AC006967.1-201ENST00000467608 589 ntBASIC4.23□□□□□ -1.73
FOXA1P55317 RPL35AP15-201ENST00000468042 339 ntBASIC4.23□□□□□ -1.73
FOXA1P55317 AC099509.1-201ENST00000502437 652 ntTSL 2 BASIC4.23□□□□□ -1.73
FOXA1P55317 UBE2D3-217ENST00000504211 578 ntTSL 2 BASIC4.23□□□□□ -1.73
FOXA1P55317 ATP1B1P1-201ENST00000509767 915 ntBASIC4.23□□□□□ -1.73
FOXA1P55317 DDHD2-219ENST00000529845 945 ntTSL 5 BASIC4.23□□□□□ -1.73
FOXA1P55317 TEX12-202ENST00000530752 787 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
FOXA1P55317 TWF1-207ENST00000548315 1170 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
FOXA1P55317 LINC02157-201ENST00000558885 447 ntTSL 5 BASIC4.23□□□□□ -1.73
FOXA1P55317 AC005692.2-201ENST00000566521 596 ntTSL 3 BASIC4.23□□□□□ -1.73
FOXA1P55317 CYP4A43P-201ENST00000568156 121 ntBASIC4.23□□□□□ -1.73
FOXA1P55317 AC068790.7-201ENST00000602347 528 ntBASIC4.23□□□□□ -1.73
FOXA1P55317 AC005229.3-201ENST00000603438 323 ntBASIC4.23□□□□□ -1.73
FOXA1P55317 AC100847.1-201ENST00000611316 481 ntBASIC4.23□□□□□ -1.73
FOXA1P55317 AC007546.1-201ENST00000619452 559 ntBASIC4.23□□□□□ -1.73
FOXA1P55317 AC091953.3-201ENST00000623220 236 ntBASIC4.23□□□□□ -1.73
FOXA1P55317 AL049536.1-201ENST00000625043 744 ntBASIC4.23□□□□□ -1.73
FOXA1P55317 FP325313.1-201ENST00000638228 703 ntBASIC4.23□□□□□ -1.73
FOXA1P55317 AC138627.1-204ENST00000641894 765 ntBASIC4.23□□□□□ -1.73
FOXA1P55317 AC019197.1-201ENST00000638199 3611 ntTSL 5 BASIC4.23□□□□□ -1.73
FOXA1P55317 ZZZ3-202ENST00000370801 4328 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
FOXA1P55317 ECT2L-203ENST00000423192 4319 ntAPPRIS P1 TSL 5 BASIC4.23□□□□□ -1.73
FOXA1P55317 OR5B12-202ENST00000641921 1807 ntAPPRIS P1 BASIC4.23□□□□□ -1.73
FOXA1P55317 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC4.23□□□□□ -1.73
FOXA1P55317 LINC01109-201ENST00000603837 3081 ntBASIC4.23□□□□□ -1.73
FOXA1P55317 CENPI-201ENST00000372926 2375 ntAPPRIS ALT2 TSL 5 BASIC4.22□□□□□ -1.73
FOXA1P55317 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
FOXA1P55317 AC073429.2-201ENST00000569694 1444 ntBASIC4.22□□□□□ -1.73
FOXA1P55317 MPDZ-211ENST00000536827 6176 ntAPPRIS ALT2 TSL 1 (best) BASIC4.22□□□□□ -1.73
FOXA1P55317 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC4.22□□□□□ -1.73
FOXA1P55317 OR2AP1-202ENST00000641114 1548 ntAPPRIS P1 BASIC4.22□□□□□ -1.73
FOXA1P55317 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC4.22□□□□□ -1.73
FOXA1P55317 UGP2-203ENST00000445915 1955 ntTSL 2 BASIC4.22□□□□□ -1.73
FOXA1P55317 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC4.22□□□□□ -1.73
FOXA1P55317 KIAA0586-202ENST00000354386 5226 ntAPPRIS ALT2 TSL 2 BASIC4.22□□□□□ -1.73
FOXA1P55317 PHTF2-208ENST00000450574 2516 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
FOXA1P55317 VDAC2P1-201ENST00000399358 958 ntBASIC4.22□□□□□ -1.73
FOXA1P55317 RPS23P10-201ENST00000416185 486 ntBASIC4.22□□□□□ -1.73
FOXA1P55317 DNAJA1P1-201ENST00000425106 1187 ntBASIC4.22□□□□□ -1.73
FOXA1P55317 AC105940.1-201ENST00000434265 353 ntTSL 3 BASIC4.22□□□□□ -1.73
FOXA1P55317 AL359265.2-201ENST00000434367 631 ntBASIC4.22□□□□□ -1.73
FOXA1P55317 AC114495.1-201ENST00000441274 436 ntBASIC4.22□□□□□ -1.73
FOXA1P55317 AC073587.1-201ENST00000447093 876 ntBASIC4.22□□□□□ -1.73
FOXA1P55317 AL591623.2-201ENST00000449978 222 ntBASIC4.22□□□□□ -1.73
FOXA1P55317 PLCE1-AS2-205ENST00000453183 427 ntTSL 5 BASIC4.22□□□□□ -1.73
FOXA1P55317 AL035409.1-201ENST00000454305 497 ntTSL 2 BASIC4.22□□□□□ -1.73
FOXA1P55317 DHFRP3-201ENST00000455595 559 ntBASIC4.22□□□□□ -1.73
FOXA1P55317 RPL7P22-201ENST00000466005 733 ntBASIC4.22□□□□□ -1.73
FOXA1P55317 RN7SL354P-201ENST00000469282 294 ntBASIC4.22□□□□□ -1.73
FOXA1P55317 AC083982.1-201ENST00000485679 344 ntBASIC4.22□□□□□ -1.73
FOXA1P55317 AP002981.1-201ENST00000517692 975 ntBASIC4.22□□□□□ -1.73
FOXA1P55317 IFITM8P-201ENST00000522529 394 ntBASIC4.22□□□□□ -1.73
FOXA1P55317 OR5BC1P-201ENST00000529327 739 ntBASIC4.22□□□□□ -1.73
FOXA1P55317 AC008056.2-201ENST00000553812 551 ntTSL 5 BASIC4.22□□□□□ -1.73
FOXA1P55317 AL121989.1-201ENST00000585888 746 ntTSL 3 BASIC4.22□□□□□ -1.73
FOXA1P55317 AC115522.1-201ENST00000595680 556 ntTSL 4 BASIC4.22□□□□□ -1.73
FOXA1P55317 AP001160.4-201ENST00000596971 382 ntBASIC4.22□□□□□ -1.73
FOXA1P55317 C2orf91-203ENST00000615044 393 ntAPPRIS ALT2 TSL 5 BASIC4.22□□□□□ -1.73
FOXA1P55317 CP-201ENST00000264613 4676 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
FOXA1P55317 AC016588.2-201ENST00000632484 3021 ntBASIC4.22□□□□□ -1.73
FOXA1P55317 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC4.22□□□□□ -1.73
FOXA1P55317 STAMBPL1-202ENST00000371924 2208 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
FOXA1P55317 CUL3-216ENST00000617432 1426 ntTSL 5 BASIC4.21□□□□□ -1.73
FOXA1P55317 DDX4-204ENST00000505374 2884 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.73
FOXA1P55317 AC021074.3-201ENST00000476385 1825 ntTSL 2 BASIC4.21□□□□□ -1.74
FOXA1P55317 MAPK10-263ENST00000641052 4307 ntBASIC4.21□□□□□ -1.74
FOXA1P55317 NEK11-207ENST00000508196 1938 ntAPPRIS P3 TSL 2 BASIC4.21□□□□□ -1.74
FOXA1P55317 AADAT-202ENST00000353187 2101 ntAPPRIS P3 TSL 2 BASIC4.21□□□□□ -1.74
FOXA1P55317 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 119.3 ms