Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 DCN-201ENST00000052754 7156 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
CXCL12P48061 GABRG1-201ENST00000295452 6785 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
CXCL12P48061 LGI1-202ENST00000371418 2381 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
CXCL12P48061 OR10Z1-202ENST00000641002 6323 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
CXCL12P48061 AC005005.4-201ENST00000623789 16698 ntBASIC4.56□□□□□ -1.68
CXCL12P48061 LIMA1-212ENST00000552491 2652 ntAPPRIS ALT2 TSL 2 BASIC4.56□□□□□ -1.68
CXCL12P48061 EFCAB5-201ENST00000394835 5132 ntAPPRIS P2 TSL 1 (best) BASIC4.56□□□□□ -1.68
CXCL12P48061 CARF-208ENST00000428585 2513 ntTSL 2 BASIC4.55□□□□□ -1.68
CXCL12P48061 AC010186.3-201ENST00000537616 2508 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
CXCL12P48061 AC135352.1-201ENST00000506173 1418 ntBASIC4.55□□□□□ -1.68
CXCL12P48061 MGC32805-205ENST00000510972 1424 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
CXCL12P48061 EIF2AP4-201ENST00000424793 1781 ntBASIC4.55□□□□□ -1.68
CXCL12P48061 RFC1-201ENST00000349703 4859 ntAPPRIS P3 TSL 1 (best) BASIC4.55□□□□□ -1.68
CXCL12P48061 TRIM51GP-201ENST00000534741 1350 ntBASIC4.55□□□□□ -1.68
CXCL12P48061 TCP11X1-202ENST00000622971 1372 ntBASIC4.55□□□□□ -1.68
CXCL12P48061 DTNA-202ENST00000283365 6522 ntTSL 5 BASIC4.55□□□□□ -1.68
CXCL12P48061 GHR-211ENST00000618088 4491 ntAPPRIS P1 TSL 5 BASIC4.55□□□□□ -1.68
CXCL12P48061 TAX1BP1-202ENST00000396319 2892 ntAPPRIS P3 TSL 1 (best) BASIC4.55□□□□□ -1.68
CXCL12P48061 SNORA62.3-201ENST00000365110 153 ntBASIC4.55□□□□□ -1.68
CXCL12P48061 RPL21P67-201ENST00000402896 478 ntBASIC4.55□□□□□ -1.68
CXCL12P48061 COX5BP7-201ENST00000414780 274 ntBASIC4.55□□□□□ -1.68
CXCL12P48061 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC4.55□□□□□ -1.68
CXCL12P48061 AL672277.1-201ENST00000420865 588 ntTSL 2 BASIC4.55□□□□□ -1.68
CXCL12P48061 OR5K2-201ENST00000427338 1060 ntAPPRIS P1 BASIC4.55□□□□□ -1.68
CXCL12P48061 AF064858.2-201ENST00000440714 292 ntTSL 3 BASIC4.55□□□□□ -1.68
CXCL12P48061 CYCSP24-201ENST00000445119 316 ntBASIC4.55□□□□□ -1.68
CXCL12P48061 ISCUP1-201ENST00000454451 448 ntBASIC4.55□□□□□ -1.68
CXCL12P48061 AC053481.1-201ENST00000467217 306 ntBASIC4.55□□□□□ -1.68
CXCL12P48061 AC004069.1-201ENST00000504082 549 ntTSL 4 BASIC4.55□□□□□ -1.68
CXCL12P48061 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC4.55□□□□□ -1.68
CXCL12P48061 RNU6-964P-201ENST00000516524 69 ntBASIC4.55□□□□□ -1.68
CXCL12P48061 AC105031.1-201ENST00000518550 476 ntBASIC4.55□□□□□ -1.68
CXCL12P48061 RPL23AP53-201ENST00000521854 457 ntBASIC4.55□□□□□ -1.68
CXCL12P48061 AF123462.1-201ENST00000554307 446 ntTSL 3 BASIC4.55□□□□□ -1.68
CXCL12P48061 LINC00911-201ENST00000555272 546 ntTSL 2 BASIC4.55□□□□□ -1.68
CXCL12P48061 AC090515.3-201ENST00000560431 315 ntBASIC4.55□□□□□ -1.68
CXCL12P48061 CHEK2P2-203ENST00000566448 670 ntTSL 5 BASIC4.55□□□□□ -1.68
CXCL12P48061 MIR3158-1-201ENST00000583596 81 ntBASIC4.55□□□□□ -1.68
CXCL12P48061 AC022916.2-201ENST00000590144 559 ntTSL 4 BASIC4.55□□□□□ -1.68
CXCL12P48061 IGKV1OR2-118-201ENST00000603238 347 ntBASIC4.55□□□□□ -1.68
CXCL12P48061 LINC01355-202ENST00000604481 400 ntTSL 2 BASIC4.55□□□□□ -1.68
CXCL12P48061 uc_338.13-201ENST00000618243 179 ntBASIC4.55□□□□□ -1.68
CXCL12P48061 AP003497.2-201ENST00000624220 967 ntBASIC4.55□□□□□ -1.68
CXCL12P48061 LINC01619-207ENST00000551843 2205 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
CXCL12P48061 SMG1P4-204ENST00000523028 4131 ntBASIC4.55□□□□□ -1.68
CXCL12P48061 AL031119.1-201ENST00000404707 1879 ntBASIC4.55□□□□□ -1.68
CXCL12P48061 MRRF-208ENST00000394315 1501 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
CXCL12P48061 PHLDB2-214ENST00000495180 4159 ntTSL 2 BASIC4.55□□□□□ -1.68
CXCL12P48061 CLCN5-202ENST00000376088 10108 ntTSL 2 BASIC4.55□□□□□ -1.68
CXCL12P48061 PPEF1-201ENST00000349874 2687 ntTSL 5 BASIC4.55□□□□□ -1.68
CXCL12P48061 NECAB1-202ENST00000521366 2908 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
CXCL12P48061 CYP3A43-204ENST00000354829 1709 ntAPPRIS ALT1 TSL 1 (best) BASIC4.55□□□□□ -1.68
CXCL12P48061 RPL34-AS1-202ENST00000507248 3713 ntTSL 2 BASIC4.55□□□□□ -1.68
CXCL12P48061 VN2R3P-201ENST00000422626 1412 ntBASIC4.55□□□□□ -1.68
CXCL12P48061 OR56A4-204ENST00000641835 3613 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
CXCL12P48061 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC4.54□□□□□ -1.68
CXCL12P48061 AL391684.1-202ENST00000641293 1636 ntBASIC4.54□□□□□ -1.68
CXCL12P48061 GHR-202ENST00000357703 4316 ntTSL 5 BASIC4.54□□□□□ -1.68
CXCL12P48061 GHR-213ENST00000622294 4312 ntTSL 5 BASIC4.54□□□□□ -1.68
CXCL12P48061 DDX18P5-201ENST00000534547 1306 ntBASIC4.54□□□□□ -1.68
CXCL12P48061 ZNF93-201ENST00000343769 2648 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
CXCL12P48061 SLC24A2-202ENST00000341998 10749 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
CXCL12P48061 LRRC19-201ENST00000380055 3609 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
CXCL12P48061 ERICH3-AS1-202ENST00000612390 4874 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
CXCL12P48061 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
CXCL12P48061 RNU1-130P-201ENST00000363930 160 ntBASIC4.54□□□□□ -1.68
CXCL12P48061 MIR554-201ENST00000384874 96 ntBASIC4.54□□□□□ -1.68
CXCL12P48061 MIR670-201ENST00000390142 98 ntBASIC4.54□□□□□ -1.68
CXCL12P48061 EIF4A1P3-201ENST00000411521 244 ntBASIC4.54□□□□□ -1.68
CXCL12P48061 YY1P1-201ENST00000427625 668 ntBASIC4.54□□□□□ -1.68
CXCL12P48061 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC4.54□□□□□ -1.68
CXCL12P48061 LRRC77P-202ENST00000463642 457 ntTSL 4 BASIC4.54□□□□□ -1.68
CXCL12P48061 NDUFB2-213ENST00000476470 482 ntTSL 5 BASIC4.54□□□□□ -1.68
CXCL12P48061 RN7SL132P-201ENST00000478131 296 ntBASIC4.54□□□□□ -1.68
CXCL12P48061 F11-205ENST00000492972 1204 ntTSL 2 BASIC4.54□□□□□ -1.68
CXCL12P48061 AC004704.1-201ENST00000511219 583 ntTSL 3 BASIC4.54□□□□□ -1.68
CXCL12P48061 AC100801.1-201ENST00000517368 517 ntTSL 3 BASIC4.54□□□□□ -1.68
CXCL12P48061 AC115837.2-201ENST00000522127 677 ntTSL 3 BASIC4.54□□□□□ -1.68
CXCL12P48061 AP001775.2-201ENST00000531710 334 ntTSL 2 BASIC4.54□□□□□ -1.68
CXCL12P48061 RERGL-202ENST00000536890 367 ntTSL 3 BASIC4.54□□□□□ -1.68
CXCL12P48061 AC113403.1-201ENST00000604910 193 ntBASIC4.54□□□□□ -1.68
CXCL12P48061 RASA1-203ENST00000506290 3009 ntAPPRIS ALT2 TSL 2 BASIC4.54□□□□□ -1.68
CXCL12P48061 TET2-203ENST00000380013 9679 ntAPPRIS P2 TSL 5 BASIC4.54□□□□□ -1.68
CXCL12P48061 CDH17-201ENST00000027335 3693 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
CXCL12P48061 OR9G1-202ENST00000642097 3611 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
CXCL12P48061 OMG-201ENST00000247271 1947 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
CXCL12P48061 ERGIC2-212ENST00000611644 4961 ntTSL 5 BASIC4.54□□□□□ -1.68
CXCL12P48061 DNAH6-202ENST00000389394 12795 ntAPPRIS P1 TSL 5 BASIC4.54□□□□□ -1.68
CXCL12P48061 AC106895.2-201ENST00000511291 1824 ntTSL 3 BASIC4.53□□□□□ -1.68
CXCL12P48061 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC4.53□□□□□ -1.68
CXCL12P48061 NUP155-202ENST00000381843 4200 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
CXCL12P48061 ERGIC2-201ENST00000360150 5014 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
CXCL12P48061 ZNF726-205ENST00000575986 1522 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
CXCL12P48061 AL603750.1-201ENST00000624216 1717 ntBASIC4.53□□□□□ -1.68
CXCL12P48061 SNRPFP1-201ENST00000414761 252 ntBASIC4.53□□□□□ -1.68
CXCL12P48061 E2F6P2-201ENST00000420708 748 ntBASIC4.53□□□□□ -1.68
CXCL12P48061 EBLN1-201ENST00000422359 1208 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
CXCL12P48061 BBIP1-203ENST00000423273 492 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
CXCL12P48061 AC009226.1-201ENST00000432413 539 ntTSL 3 BASIC4.53□□□□□ -1.68
CXCL12P48061 ARL4AP4-201ENST00000434170 518 ntBASIC4.53□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 130.3 ms