Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 Z73495.1-201ENST00000444982 147 ntTSL 3 BASIC4.56□□□□□ -1.68
SOX3P41225 Z80107.2-201ENST00000445127 392 ntBASIC4.56□□□□□ -1.68
SOX3P41225 AC068492.1-201ENST00000448672 469 ntTSL 3 BASIC4.56□□□□□ -1.68
SOX3P41225 LINC01921-201ENST00000456163 393 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
SOX3P41225 AC092691.2-201ENST00000461787 803 ntBASIC4.56□□□□□ -1.68
SOX3P41225 AC092324.1-201ENST00000468671 324 ntBASIC4.56□□□□□ -1.68
SOX3P41225 AC105233.1-201ENST00000498840 781 ntBASIC4.56□□□□□ -1.68
SOX3P41225 ENPP7P9-201ENST00000514456 627 ntBASIC4.56□□□□□ -1.68
SOX3P41225 HDAC2-AS2-207ENST00000518470 563 ntTSL 4 BASIC4.56□□□□□ -1.68
SOX3P41225 HMMR-AS1-202ENST00000521666 800 ntTSL 2 BASIC4.56□□□□□ -1.68
SOX3P41225 TWF1-207ENST00000548315 1170 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
SOX3P41225 LINC02325-202ENST00000554260 567 ntTSL 4 BASIC4.56□□□□□ -1.68
SOX3P41225 AL049830.4-201ENST00000555149 351 ntBASIC4.56□□□□□ -1.68
SOX3P41225 ARPP19-204ENST00000563277 955 ntTSL 2 BASIC4.56□□□□□ -1.68
SOX3P41225 TVP23CP2-201ENST00000571473 623 ntBASIC4.56□□□□□ -1.68
SOX3P41225 SNORD39.2-201ENST00000579995 76 ntBASIC4.56□□□□□ -1.68
SOX3P41225 C18orf32-202ENST00000582392 714 ntAPPRIS P1 TSL 3 BASIC4.56□□□□□ -1.68
SOX3P41225 AP005433.1-201ENST00000582939 620 ntTSL 2 BASIC4.56□□□□□ -1.68
SOX3P41225 AL121989.1-201ENST00000585888 746 ntTSL 3 BASIC4.56□□□□□ -1.68
SOX3P41225 AC119501.1-201ENST00000603646 475 ntBASIC4.56□□□□□ -1.68
SOX3P41225 AP001521.2-201ENST00000608772 546 ntBASIC4.56□□□□□ -1.68
SOX3P41225 AC245389.2-201ENST00000616023 576 ntBASIC4.56□□□□□ -1.68
SOX3P41225 MIR1264-201ENST00000616374 69 ntBASIC4.56□□□□□ -1.68
SOX3P41225 AC242843.1-201ENST00000618702 573 ntBASIC4.56□□□□□ -1.68
SOX3P41225 AL163051.2-201ENST00000618976 735 ntBASIC4.56□□□□□ -1.68
SOX3P41225 SYNJ2BP-COX16-205ENST00000621525 929 ntAPPRIS P2 TSL 2 BASIC4.56□□□□□ -1.68
SOX3P41225 OR5R1-201ENST00000623286 975 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
SOX3P41225 BANCR-201ENST00000624238 473 ntTSL 2 BASIC4.56□□□□□ -1.68
SOX3P41225 AC084816.1-212ENST00000625240 1114 ntTSL 5 BASIC4.56□□□□□ -1.68
SOX3P41225 RGS5-212ENST00000618415 5812 ntTSL 4 BASIC4.56□□□□□ -1.68
SOX3P41225 SPAM1-201ENST00000223028 2007 ntAPPRIS ALT2 TSL 5 BASIC4.56□□□□□ -1.68
SOX3P41225 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
SOX3P41225 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
SOX3P41225 KCNH7-205ENST00000621889 1893 ntTSL 5 BASIC4.56□□□□□ -1.68
SOX3P41225 AL672167.1-203ENST00000641299 2975 ntBASIC4.56□□□□□ -1.68
SOX3P41225 CLSPN-206ENST00000520551 4010 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
SOX3P41225 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC4.55□□□□□ -1.68
SOX3P41225 MTRR-202ENST00000440940 3215 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
SOX3P41225 CD86-203ENST00000393627 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC4.55□□□□□ -1.68
SOX3P41225 DCLRE1A-201ENST00000361384 4468 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
SOX3P41225 ZNF284-201ENST00000421176 4351 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
SOX3P41225 ALB-201ENST00000295897 2263 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
SOX3P41225 C6orf10-210ENST00000617061 1904 ntAPPRIS ALT2 TSL 5 BASIC4.55□□□□□ -1.68
SOX3P41225 MIR585-201ENST00000384887 94 ntBASIC4.55□□□□□ -1.68
SOX3P41225 AL035419.1-201ENST00000397037 564 ntBASIC4.55□□□□□ -1.68
SOX3P41225 HMGB3P7-201ENST00000400214 611 ntBASIC4.55□□□□□ -1.68
SOX3P41225 LINC00161-201ENST00000412526 870 ntTSL 2 BASIC4.55□□□□□ -1.68
SOX3P41225 BMS1P17-201ENST00000413661 723 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
SOX3P41225 GTF2IP5-201ENST00000414608 731 ntBASIC4.55□□□□□ -1.68
SOX3P41225 LINC00364-201ENST00000415120 611 ntTSL 3 BASIC4.55□□□□□ -1.68
SOX3P41225 AL360081.1-201ENST00000428299 555 ntBASIC4.55□□□□□ -1.68
SOX3P41225 TEX41-205ENST00000431734 529 ntTSL 4 BASIC4.55□□□□□ -1.68
SOX3P41225 AC008072.1-201ENST00000434254 824 ntBASIC4.55□□□□□ -1.68
SOX3P41225 AL353898.1-201ENST00000444055 238 ntBASIC4.55□□□□□ -1.68
SOX3P41225 AC026320.1-202ENST00000444729 672 ntTSL 3 BASIC4.55□□□□□ -1.68
SOX3P41225 OR52J1P-201ENST00000450596 932 ntBASIC4.55□□□□□ -1.68
SOX3P41225 AC091685.2-201ENST00000454924 864 ntBASIC4.55□□□□□ -1.68
SOX3P41225 CYCSP34-201ENST00000458172 304 ntBASIC4.55□□□□□ -1.68
SOX3P41225 SUCLG2-AS1-203ENST00000496640 862 ntTSL 5 BASIC4.55□□□□□ -1.68
SOX3P41225 LINC02270-201ENST00000505386 610 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
SOX3P41225 GAPDHP56-201ENST00000506031 988 ntBASIC4.55□□□□□ -1.68
SOX3P41225 AC114284.1-201ENST00000511422 1114 ntTSL 2 BASIC4.55□□□□□ -1.68
SOX3P41225 AC016885.1-201ENST00000517796 532 ntTSL 4 BASIC4.55□□□□□ -1.68
SOX3P41225 THUMPD3-AS1-210ENST00000519043 1115 ntTSL 3 BASIC4.55□□□□□ -1.68
SOX3P41225 AC091163.1-201ENST00000524012 605 ntTSL 4 BASIC4.55□□□□□ -1.68
SOX3P41225 MORF4L1P3-201ENST00000525966 950 ntBASIC4.55□□□□□ -1.68
SOX3P41225 AC093014.1-201ENST00000548926 724 ntBASIC4.55□□□□□ -1.68
SOX3P41225 AL049875.1-201ENST00000554328 582 ntTSL 4 BASIC4.55□□□□□ -1.68
SOX3P41225 AL136298.1-201ENST00000557371 566 ntTSL 3 BASIC4.55□□□□□ -1.68
SOX3P41225 AC106785.3-201ENST00000564064 847 ntBASIC4.55□□□□□ -1.68
SOX3P41225 LINC02520-201ENST00000570443 537 ntTSL 4 BASIC4.55□□□□□ -1.68
SOX3P41225 CYCSP40-201ENST00000575927 294 ntBASIC4.55□□□□□ -1.68
SOX3P41225 AC021517.1-203ENST00000590257 421 ntTSL 3 BASIC4.55□□□□□ -1.68
SOX3P41225 AC008537.2-201ENST00000596135 482 ntTSL 3 BASIC4.55□□□□□ -1.68
SOX3P41225 AC019131.2-201ENST00000609071 870 ntBASIC4.55□□□□□ -1.68
SOX3P41225 SATB1-AS1-237ENST00000626982 735 ntTSL 5 BASIC4.55□□□□□ -1.68
SOX3P41225 AC107068.2-201ENST00000634611 447 ntTSL 2 BASIC4.55□□□□□ -1.68
SOX3P41225 ZNF679-202ENST00000421025 1567 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
SOX3P41225 EIF2AK2-201ENST00000233057 10042 ntAPPRIS P1 TSL 2 BASIC4.55□□□□□ -1.68
SOX3P41225 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
SOX3P41225 SLAIN1-201ENST00000267219 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC4.55□□□□□ -1.68
SOX3P41225 ZFAND6-213ENST00000559835 1446 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
SOX3P41225 CLCA1-202ENST00000394711 3118 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
SOX3P41225 XIRP2-203ENST00000409195 12675 ntTSL 5 BASIC4.54□□□□□ -1.68
SOX3P41225 CNTN1-202ENST00000348761 3328 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
SOX3P41225 AL583808.2-201ENST00000418078 1382 ntTSL 5 BASIC4.54□□□□□ -1.68
SOX3P41225 RNMT-209ENST00000592764 4108 ntTSL 2 BASIC4.54□□□□□ -1.68
SOX3P41225 NKIRAS1-209ENST00000614374 1612 ntAPPRIS P2 TSL 1 (best) BASIC4.54□□□□□ -1.68
SOX3P41225 AC011900.1-201ENST00000446838 2999 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
SOX3P41225 SPART-201ENST00000355182 4820 ntAPPRIS P1 TSL 5 BASIC4.54□□□□□ -1.68
SOX3P41225 PUS7L-203ENST00000431332 1873 ntTSL 2 BASIC4.54□□□□□ -1.68
SOX3P41225 CAST-201ENST00000309190 4282 ntAPPRIS P3 TSL 1 (best) BASIC4.54□□□□□ -1.68
SOX3P41225 LINC02476-201ENST00000426413 1577 ntTSL 2 BASIC4.54□□□□□ -1.68
SOX3P41225 SAMMSON-226ENST00000642089 1582 ntBASIC4.54□□□□□ -1.68
SOX3P41225 AC107021.2-201ENST00000567714 2095 ntBASIC4.54□□□□□ -1.68
SOX3P41225 AL034376.1-201ENST00000380106 484 ntTSL 2 BASIC4.54□□□□□ -1.68
SOX3P41225 RNU6-1176P-201ENST00000390955 107 ntBASIC4.54□□□□□ -1.68
SOX3P41225 AL034403.1-201ENST00000399414 885 ntBASIC4.54□□□□□ -1.68
SOX3P41225 RPL26P37-201ENST00000411983 438 ntBASIC4.54□□□□□ -1.68
SOX3P41225 SETP15-201ENST00000412724 337 ntBASIC4.54□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 98 ms