Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC20.39■□□□□ 0.86
USP3Q9Y6I4 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
USP3Q9Y6I4 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
USP3Q9Y6I4 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.86
USP3Q9Y6I4 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
USP3Q9Y6I4 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
USP3Q9Y6I4 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
USP3Q9Y6I4 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
USP3Q9Y6I4 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC20.39■□□□□ 0.85
USP3Q9Y6I4 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC20.39■□□□□ 0.85
USP3Q9Y6I4 AP003071.4-201ENST00000562276 1284 ntBASIC20.39■□□□□ 0.85
USP3Q9Y6I4 AC026271.3-201ENST00000571884 352 ntBASIC20.39■□□□□ 0.85
USP3Q9Y6I4 SNX21-213ENST00000614929 587 ntTSL 5 BASIC20.39■□□□□ 0.85
USP3Q9Y6I4 AL031985.4-201ENST00000642138 673 ntBASIC20.39■□□□□ 0.85
USP3Q9Y6I4 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC20.39■□□□□ 0.85
USP3Q9Y6I4 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC20.39■□□□□ 0.85
USP3Q9Y6I4 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC20.39■□□□□ 0.85
USP3Q9Y6I4 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
USP3Q9Y6I4 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
USP3Q9Y6I4 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC20.38■□□□□ 0.85
USP3Q9Y6I4 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC20.38■□□□□ 0.85
USP3Q9Y6I4 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
USP3Q9Y6I4 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
USP3Q9Y6I4 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC20.38■□□□□ 0.85
USP3Q9Y6I4 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC20.38■□□□□ 0.85
USP3Q9Y6I4 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
USP3Q9Y6I4 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC20.38■□□□□ 0.85
USP3Q9Y6I4 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC20.38■□□□□ 0.85
USP3Q9Y6I4 AL355355.2-201ENST00000442321 338 ntBASIC20.38■□□□□ 0.85
USP3Q9Y6I4 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
USP3Q9Y6I4 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
USP3Q9Y6I4 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
USP3Q9Y6I4 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
USP3Q9Y6I4 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
USP3Q9Y6I4 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
USP3Q9Y6I4 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC20.38■□□□□ 0.85
USP3Q9Y6I4 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
USP3Q9Y6I4 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
USP3Q9Y6I4 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC20.38■□□□□ 0.85
USP3Q9Y6I4 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
USP3Q9Y6I4 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC20.38■□□□□ 0.85
USP3Q9Y6I4 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC20.38■□□□□ 0.85
USP3Q9Y6I4 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
USP3Q9Y6I4 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
USP3Q9Y6I4 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
USP3Q9Y6I4 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
USP3Q9Y6I4 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
USP3Q9Y6I4 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
USP3Q9Y6I4 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
USP3Q9Y6I4 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
USP3Q9Y6I4 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
USP3Q9Y6I4 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
USP3Q9Y6I4 MESTP1-201ENST00000404287 994 ntBASIC20.37■□□□□ 0.85
USP3Q9Y6I4 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC20.37■□□□□ 0.85
USP3Q9Y6I4 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC20.37■□□□□ 0.85
USP3Q9Y6I4 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC20.37■□□□□ 0.85
USP3Q9Y6I4 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC20.37■□□□□ 0.85
USP3Q9Y6I4 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC20.37■□□□□ 0.85
USP3Q9Y6I4 REXO1L10P-201ENST00000615707 1290 ntBASIC20.37■□□□□ 0.85
USP3Q9Y6I4 REXO1L12P-201ENST00000622156 912 ntBASIC20.37■□□□□ 0.85
USP3Q9Y6I4 AC131212.4-201ENST00000623606 975 ntBASIC20.37■□□□□ 0.85
USP3Q9Y6I4 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC20.37■□□□□ 0.85
USP3Q9Y6I4 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
USP3Q9Y6I4 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
USP3Q9Y6I4 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC20.37■□□□□ 0.85
USP3Q9Y6I4 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
USP3Q9Y6I4 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
USP3Q9Y6I4 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
USP3Q9Y6I4 PKD1P6-201ENST00000343738 4769 ntBASIC20.36■□□□□ 0.85
USP3Q9Y6I4 POLI-202ENST00000406285 2030 ntTSL 2 BASIC20.36■□□□□ 0.85
USP3Q9Y6I4 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
USP3Q9Y6I4 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
USP3Q9Y6I4 ANKRD18DP-204ENST00000455355 1975 ntBASIC20.36■□□□□ 0.85
USP3Q9Y6I4 PWWP2AP1-201ENST00000429776 2273 ntBASIC20.36■□□□□ 0.85
USP3Q9Y6I4 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC20.36■□□□□ 0.85
USP3Q9Y6I4 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
USP3Q9Y6I4 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
USP3Q9Y6I4 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
USP3Q9Y6I4 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
USP3Q9Y6I4 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC20.36■□□□□ 0.85
USP3Q9Y6I4 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC20.36■□□□□ 0.85
USP3Q9Y6I4 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC20.36■□□□□ 0.85
USP3Q9Y6I4 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC20.36■□□□□ 0.85
USP3Q9Y6I4 TSPY15P-201ENST00000457163 923 ntBASIC20.36■□□□□ 0.85
USP3Q9Y6I4 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC20.36■□□□□ 0.85
USP3Q9Y6I4 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC20.36■□□□□ 0.85
USP3Q9Y6I4 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC20.36■□□□□ 0.85
USP3Q9Y6I4 AL355075.4-201ENST00000554988 638 ntBASIC20.36■□□□□ 0.85
USP3Q9Y6I4 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC20.36■□□□□ 0.85
USP3Q9Y6I4 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC20.36■□□□□ 0.85
USP3Q9Y6I4 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
USP3Q9Y6I4 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
USP3Q9Y6I4 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
USP3Q9Y6I4 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
USP3Q9Y6I4 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC20.35■□□□□ 0.85
USP3Q9Y6I4 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC20.35■□□□□ 0.85
USP3Q9Y6I4 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
USP3Q9Y6I4 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
USP3Q9Y6I4 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC20.35■□□□□ 0.85
USP3Q9Y6I4 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC20.35■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms