Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 TUBB8P6-201ENST00000436895 1288 ntBASIC18.48■□□□□ 0.55
LIM2P55344 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
LIM2P55344 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC18.48■□□□□ 0.55
LIM2P55344 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
LIM2P55344 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC18.48■□□□□ 0.55
LIM2P55344 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
LIM2P55344 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
LIM2P55344 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC18.48■□□□□ 0.55
LIM2P55344 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC18.48■□□□□ 0.55
LIM2P55344 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
LIM2P55344 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC18.48■□□□□ 0.55
LIM2P55344 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
LIM2P55344 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
LIM2P55344 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
LIM2P55344 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
LIM2P55344 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
LIM2P55344 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
LIM2P55344 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
LIM2P55344 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC18.47■□□□□ 0.55
LIM2P55344 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
LIM2P55344 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
LIM2P55344 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC18.47■□□□□ 0.55
LIM2P55344 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC18.47■□□□□ 0.55
LIM2P55344 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
LIM2P55344 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
LIM2P55344 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC18.47■□□□□ 0.55
LIM2P55344 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC18.47■□□□□ 0.55
LIM2P55344 RHOD-202ENST00000532559 538 ntTSL 3 BASIC18.47■□□□□ 0.55
LIM2P55344 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
LIM2P55344 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC18.47■□□□□ 0.55
LIM2P55344 AC142381.4-202ENST00000563973 229 ntBASIC18.47■□□□□ 0.55
LIM2P55344 FAM197Y4-202ENST00000622692 608 ntBASIC18.47■□□□□ 0.55
LIM2P55344 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC18.47■□□□□ 0.55
LIM2P55344 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC18.47■□□□□ 0.55
LIM2P55344 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC18.47■□□□□ 0.55
LIM2P55344 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC18.47■□□□□ 0.55
LIM2P55344 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
LIM2P55344 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
LIM2P55344 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC18.47■□□□□ 0.55
LIM2P55344 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
LIM2P55344 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
LIM2P55344 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
LIM2P55344 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
LIM2P55344 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
LIM2P55344 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
LIM2P55344 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
LIM2P55344 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
LIM2P55344 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
LIM2P55344 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC18.46■□□□□ 0.55
LIM2P55344 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
LIM2P55344 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC18.46■□□□□ 0.55
LIM2P55344 GCSHP5-201ENST00000443090 522 ntBASIC18.46■□□□□ 0.55
LIM2P55344 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC18.46■□□□□ 0.55
LIM2P55344 KRT16P5-201ENST00000455284 522 ntBASIC18.46■□□□□ 0.55
LIM2P55344 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC18.46■□□□□ 0.55
LIM2P55344 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC18.46■□□□□ 0.55
LIM2P55344 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC18.46■□□□□ 0.55
LIM2P55344 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
LIM2P55344 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
LIM2P55344 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC18.46■□□□□ 0.55
LIM2P55344 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC18.46■□□□□ 0.55
LIM2P55344 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC18.46■□□□□ 0.55
LIM2P55344 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
LIM2P55344 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC18.46■□□□□ 0.55
LIM2P55344 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
LIM2P55344 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
LIM2P55344 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC18.45■□□□□ 0.54
LIM2P55344 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
LIM2P55344 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC18.45■□□□□ 0.54
LIM2P55344 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
LIM2P55344 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC18.45■□□□□ 0.54
LIM2P55344 AC018445.3-201ENST00000624177 1945 ntBASIC18.45■□□□□ 0.54
LIM2P55344 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC18.45■□□□□ 0.54
LIM2P55344 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
LIM2P55344 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
LIM2P55344 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
LIM2P55344 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
LIM2P55344 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
LIM2P55344 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
LIM2P55344 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
LIM2P55344 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC18.45■□□□□ 0.54
LIM2P55344 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC18.45■□□□□ 0.54
LIM2P55344 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC18.45■□□□□ 0.54
LIM2P55344 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC18.45■□□□□ 0.54
LIM2P55344 KRT8P8-201ENST00000434750 1448 ntBASIC18.45■□□□□ 0.54
LIM2P55344 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
LIM2P55344 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC18.45■□□□□ 0.54
LIM2P55344 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
LIM2P55344 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
LIM2P55344 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
LIM2P55344 AC098818.2-201ENST00000564925 2320 ntBASIC18.45■□□□□ 0.54
LIM2P55344 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
LIM2P55344 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC18.45■□□□□ 0.54
LIM2P55344 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
LIM2P55344 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
LIM2P55344 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
LIM2P55344 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
LIM2P55344 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC18.44■□□□□ 0.54
LIM2P55344 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
LIM2P55344 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC18.44■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms