Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 AC006333.1-202ENST00000440504 555 ntTSL 4 BASIC6.12□□□□□ -1.43
NUP88Q99567 USP9YP17-201ENST00000444617 696 ntBASIC6.12□□□□□ -1.43
NUP88Q99567 MTND1P33-201ENST00000446251 917 ntBASIC6.12□□□□□ -1.43
NUP88Q99567 snoU13.20-201ENST00000459180 104 ntBASIC6.12□□□□□ -1.43
NUP88Q99567 RPL6P9-201ENST00000466502 859 ntBASIC6.12□□□□□ -1.43
NUP88Q99567 AC090602.1-201ENST00000469695 252 ntBASIC6.12□□□□□ -1.43
NUP88Q99567 AC079203.1-201ENST00000487972 404 ntBASIC6.12□□□□□ -1.43
NUP88Q99567 DWORF-201ENST00000489090 873 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
NUP88Q99567 AC020699.1-201ENST00000505161 445 ntBASIC6.12□□□□□ -1.43
NUP88Q99567 FGB-207ENST00000509493 1164 ntTSL 5 BASIC6.12□□□□□ -1.43
NUP88Q99567 HPRT1P1-201ENST00000509498 657 ntBASIC6.12□□□□□ -1.43
NUP88Q99567 GTF2F2P1-201ENST00000511083 675 ntBASIC6.12□□□□□ -1.43
NUP88Q99567 AP002812.2-201ENST00000525594 585 ntTSL 4 BASIC6.12□□□□□ -1.43
NUP88Q99567 AC073172.2-201ENST00000527770 571 ntTSL 4 BASIC6.12□□□□□ -1.43
NUP88Q99567 MIR100HG-213ENST00000531470 560 ntTSL 4 BASIC6.12□□□□□ -1.43
NUP88Q99567 LMNTD1-207ENST00000539744 1729 ntAPPRIS ALT2 TSL 1 (best) BASIC6.12□□□□□ -1.43
NUP88Q99567 AP002373.2-201ENST00000541631 1060 ntBASIC6.12□□□□□ -1.43
NUP88Q99567 LINC02293-202ENST00000548385 358 ntTSL 3 BASIC6.12□□□□□ -1.43
NUP88Q99567 AC025263.2-201ENST00000550437 548 ntAPPRIS P1 TSL 5 BASIC6.12□□□□□ -1.43
NUP88Q99567 AC074031.1-201ENST00000550634 734 ntTSL 3 BASIC6.12□□□□□ -1.43
NUP88Q99567 AC008147.1-201ENST00000551284 325 ntTSL 3 BASIC6.12□□□□□ -1.43
NUP88Q99567 KTN1-223ENST00000555573 1712 ntTSL 2 BASIC6.12□□□□□ -1.43
NUP88Q99567 AL136501.1-201ENST00000555913 790 ntTSL 2 BASIC6.12□□□□□ -1.43
NUP88Q99567 MIR4646-201ENST00000580775 63 ntBASIC6.12□□□□□ -1.43
NUP88Q99567 AC015845.2-201ENST00000581805 472 ntTSL 2 BASIC6.12□□□□□ -1.43
NUP88Q99567 AC092902.2-202ENST00000599350 686 ntTSL 3 BASIC6.12□□□□□ -1.43
NUP88Q99567 AC108738.1-201ENST00000603703 237 ntBASIC6.12□□□□□ -1.43
NUP88Q99567 AC068313.1-201ENST00000604028 1008 ntBASIC6.12□□□□□ -1.43
NUP88Q99567 AL365400.2-201ENST00000605604 902 ntBASIC6.12□□□□□ -1.43
NUP88Q99567 AC245452.5-201ENST00000620649 780 ntTSL 3 BASIC6.12□□□□□ -1.43
NUP88Q99567 AP003400.3-201ENST00000624904 346 ntBASIC6.12□□□□□ -1.43
NUP88Q99567 AC007389.5-201ENST00000629214 744 ntTSL 5 BASIC6.12□□□□□ -1.43
NUP88Q99567 PANDAR-201ENST00000629595 1506 ntBASIC6.12□□□□□ -1.43
NUP88Q99567 CASC19-284ENST00000642142 1868 ntBASIC6.12□□□□□ -1.43
NUP88Q99567 PRTG-201ENST00000389286 11967 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
NUP88Q99567 ZNF567-203ENST00000585696 3734 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
NUP88Q99567 LIMA1-212ENST00000552491 2652 ntAPPRIS ALT2 TSL 2 BASIC6.12□□□□□ -1.43
NUP88Q99567 SLAIN1-204ENST00000358679 2075 ntAPPRIS P3 TSL 2 BASIC6.11□□□□□ -1.43
NUP88Q99567 AC093155.3-201ENST00000370548 2013 ntAPPRIS P1 TSL 2 BASIC6.11□□□□□ -1.43
NUP88Q99567 AC023421.1-201ENST00000590535 1785 ntBASIC6.11□□□□□ -1.43
NUP88Q99567 PCDH15-207ENST00000395430 7002 ntTSL 5 BASIC6.11□□□□□ -1.43
NUP88Q99567 SLC4A7-206ENST00000428386 7385 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
NUP88Q99567 TNFAIP6-201ENST00000243347 1424 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
NUP88Q99567 HGF-202ENST00000354224 1425 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
NUP88Q99567 LINC00862-204ENST00000637098 1400 ntTSL 5 BASIC6.11□□□□□ -1.43
NUP88Q99567 ARPP19-208ENST00000566423 5362 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
NUP88Q99567 ZMYND11-209ENST00000402736 3950 ntTSL 5 BASIC6.11□□□□□ -1.43
NUP88Q99567 SEPT7P7-201ENST00000420492 1301 ntBASIC6.11□□□□□ -1.43
NUP88Q99567 DYNC1I2-202ENST00000397119 2604 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
NUP88Q99567 SNURFL-201ENST00000309296 343 ntBASIC6.11□□□□□ -1.43
NUP88Q99567 AC007618.1-201ENST00000366455 732 ntBASIC6.11□□□□□ -1.43
NUP88Q99567 SNORD65C-201ENST00000390962 71 ntBASIC6.11□□□□□ -1.43
NUP88Q99567 AC092111.3-201ENST00000402465 496 ntAPPRIS P1 TSL 2 BASIC6.11□□□□□ -1.43
NUP88Q99567 DNAJA1P4-201ENST00000406473 1166 ntBASIC6.11□□□□□ -1.43
NUP88Q99567 AL592310.1-201ENST00000414330 671 ntBASIC6.11□□□□□ -1.43
NUP88Q99567 AL355306.2-209ENST00000437803 357 ntTSL 2 BASIC6.11□□□□□ -1.43
NUP88Q99567 AC099654.1-201ENST00000442649 407 ntTSL 3 BASIC6.11□□□□□ -1.43
NUP88Q99567 AC083899.1-201ENST00000454465 3819 ntBASIC6.11□□□□□ -1.43
NUP88Q99567 OFD1P7Y-201ENST00000454643 1155 ntBASIC6.11□□□□□ -1.43
NUP88Q99567 AC007003.1-201ENST00000472463 736 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
NUP88Q99567 FXN-205ENST00000498653 856 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
NUP88Q99567 LINC02428-201ENST00000508099 527 ntTSL 5 BASIC6.11□□□□□ -1.43
NUP88Q99567 NDUFB5P1-201ENST00000508134 564 ntBASIC6.11□□□□□ -1.43
NUP88Q99567 AC008837.1-201ENST00000511513 412 ntBASIC6.11□□□□□ -1.43
NUP88Q99567 RNA5SP303-201ENST00000516192 130 ntBASIC6.11□□□□□ -1.43
NUP88Q99567 Y_RNA.717-201ENST00000517106 92 ntBASIC6.11□□□□□ -1.43
NUP88Q99567 SEPT10P1-201ENST00000517342 1162 ntBASIC6.11□□□□□ -1.43
NUP88Q99567 EEF1A1P37-201ENST00000522748 715 ntBASIC6.11□□□□□ -1.43
NUP88Q99567 AC104417.1-201ENST00000523974 751 ntBASIC6.11□□□□□ -1.43
NUP88Q99567 AL158801.3-201ENST00000555514 363 ntTSL 3 BASIC6.11□□□□□ -1.43
NUP88Q99567 AC009558.2-201ENST00000558258 396 ntTSL 2 BASIC6.11□□□□□ -1.43
NUP88Q99567 CYP2C60P-201ENST00000566088 139 ntBASIC6.11□□□□□ -1.43
NUP88Q99567 AC022166.1-201ENST00000567851 581 ntTSL 5 BASIC6.11□□□□□ -1.43
NUP88Q99567 Z98949.1-211ENST00000596813 773 ntTSL 5 BASIC6.11□□□□□ -1.43
NUP88Q99567 AC009974.1-201ENST00000608881 455 ntBASIC6.11□□□□□ -1.43
NUP88Q99567 AL121890.3-201ENST00000618494 516 ntBASIC6.11□□□□□ -1.43
NUP88Q99567 AC125613.1-204ENST00000636224 1248 ntTSL 5 BASIC6.11□□□□□ -1.43
NUP88Q99567 OR6C71P-202ENST00000641886 1107 ntBASIC6.11□□□□□ -1.43
NUP88Q99567 RIMS2-205ENST00000436393 4384 ntTSL 2 BASIC6.11□□□□□ -1.43
NUP88Q99567 OR56A4-202ENST00000641156 3768 ntAPPRIS P1 BASIC6.11□□□□□ -1.43
NUP88Q99567 AL359538.1-201ENST00000453498 1710 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
NUP88Q99567 RMST-209ENST00000639542 3269 ntTSL 5 BASIC6.1□□□□□ -1.43
NUP88Q99567 AC073055.1-201ENST00000456901 1621 ntBASIC6.1□□□□□ -1.43
NUP88Q99567 BBOX1-202ENST00000525090 1596 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
NUP88Q99567 ZNF525-202ENST00000474037 3890 ntAPPRIS P1 TSL 5 BASIC6.1□□□□□ -1.43
NUP88Q99567 AL031595.2-201ENST00000624215 19071 ntBASIC6.1□□□□□ -1.43
NUP88Q99567 VPS35P1-201ENST00000563400 1518 ntBASIC6.1□□□□□ -1.43
NUP88Q99567 PTPRC-209ENST00000442510 5164 ntAPPRIS P4 TSL 1 (best) BASIC6.1□□□□□ -1.43
NUP88Q99567 TRPC4-201ENST00000338947 2912 ntTSL 5 BASIC6.1□□□□□ -1.43
NUP88Q99567 ZCCHC8-201ENST00000536306 2904 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
NUP88Q99567 ZFAND6-213ENST00000559835 1446 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
NUP88Q99567 PEAK1-201ENST00000312493 11512 ntAPPRIS P1 TSL 5 BASIC6.1□□□□□ -1.43
NUP88Q99567 CSDE1-202ENST00000339438 4006 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
NUP88Q99567 SERPINI2-206ENST00000471111 1331 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
NUP88Q99567 KIAA0408-204ENST00000483725 3284 ntAPPRIS P2 TSL 5 BASIC6.1□□□□□ -1.43
NUP88Q99567 ECHDC1-222ENST00000531967 2585 ntAPPRIS ALT2 TSL 2 BASIC6.1□□□□□ -1.43
NUP88Q99567 SEC63P2-201ENST00000503863 1939 ntBASIC6.1□□□□□ -1.43
NUP88Q99567 HOMER1-201ENST00000282260 774 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
NUP88Q99567 RN7SKP104-201ENST00000362605 328 ntBASIC6.1□□□□□ -1.43
NUP88Q99567 SNORA62.2-201ENST00000364672 152 ntBASIC6.1□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 116.5 ms