Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 AC123904.2-201ENST00000548059 300 ntBASIC5.34□□□□□ -1.55
CCDC140Q96MF4 MEG8-218ENST00000556720 456 ntTSL 3 BASIC5.34□□□□□ -1.55
CCDC140Q96MF4 AC107954.1-201ENST00000565906 727 ntBASIC5.34□□□□□ -1.55
CCDC140Q96MF4 AC099489.2-201ENST00000574976 260 ntBASIC5.34□□□□□ -1.55
CCDC140Q96MF4 RN7SL802P-201ENST00000577858 299 ntBASIC5.34□□□□□ -1.55
CCDC140Q96MF4 AC015818.3-202ENST00000579603 283 ntTSL 5 BASIC5.34□□□□□ -1.55
CCDC140Q96MF4 PIRT-201ENST00000580256 3810 ntAPPRIS P1 TSL 2 BASIC5.34□□□□□ -1.55
CCDC140Q96MF4 H3F3BP2-201ENST00000583907 357 ntBASIC5.34□□□□□ -1.55
CCDC140Q96MF4 MIR4428-201ENST00000584884 73 ntBASIC5.34□□□□□ -1.55
CCDC140Q96MF4 ZNF431-203ENST00000594425 610 ntTSL 2 BASIC5.34□□□□□ -1.55
CCDC140Q96MF4 AC011468.4-201ENST00000603942 409 ntBASIC5.34□□□□□ -1.55
CCDC140Q96MF4 AC138035.1-202ENST00000604669 683 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
CCDC140Q96MF4 AC007363.1-201ENST00000604736 620 ntBASIC5.34□□□□□ -1.55
CCDC140Q96MF4 AL035410.2-201ENST00000604963 864 ntBASIC5.34□□□□□ -1.55
CCDC140Q96MF4 CEP164P1-207ENST00000608660 504 ntTSL 5 BASIC5.34□□□□□ -1.55
CCDC140Q96MF4 LINC02019-202ENST00000609204 845 ntTSL 2 BASIC5.34□□□□□ -1.55
CCDC140Q96MF4 5_8S_rRNA.1-201ENST00000614365 152 ntBASIC5.34□□□□□ -1.55
CCDC140Q96MF4 CCL23-203ENST00000615050 624 ntAPPRIS P3 TSL 1 (best) BASIC5.34□□□□□ -1.55
CCDC140Q96MF4 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC5.34□□□□□ -1.55
CCDC140Q96MF4 AC131009.3-201ENST00000621809 287 ntBASIC5.34□□□□□ -1.55
CCDC140Q96MF4 MIR1321-201ENST00000637766 79 ntBASIC5.34□□□□□ -1.55
CCDC140Q96MF4 ERICH3-202ENST00000420661 2068 ntAPPRIS ALT2 TSL 1 (best) BASIC5.34□□□□□ -1.55
CCDC140Q96MF4 OR5T2-202ENST00000641661 2062 ntAPPRIS ALT2 BASIC5.34□□□□□ -1.55
CCDC140Q96MF4 ARPP21-220ENST00000441454 2880 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
CCDC140Q96MF4 CCDC158-201ENST00000388914 3663 ntAPPRIS P1 TSL 5 BASIC5.34□□□□□ -1.55
CCDC140Q96MF4 NPHP1-203ENST00000393272 2752 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
CCDC140Q96MF4 ELMO1-202ENST00000396040 1982 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
CCDC140Q96MF4 CLCN3-211ENST00000613795 5874 ntTSL 5 BASIC5.34□□□□□ -1.55
CCDC140Q96MF4 DNAH10-210ENST00000638045 13678 ntAPPRIS P2 TSL 5 BASIC5.34□□□□□ -1.55
CCDC140Q96MF4 GRPR-201ENST00000380289 1929 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
CCDC140Q96MF4 NOX4-211ENST00000528341 1899 ntTSL 2 BASIC5.34□□□□□ -1.55
CCDC140Q96MF4 WDR93-204ENST00000558000 1886 ntAPPRIS ALT2 TSL 1 (best) BASIC5.34□□□□□ -1.55
CCDC140Q96MF4 ZNF506-201ENST00000443905 4095 ntAPPRIS P3 TSL 2 BASIC5.34□□□□□ -1.55
CCDC140Q96MF4 FSTL5-202ENST00000379164 4757 ntAPPRIS ALT1 TSL 1 (best) BASIC5.34□□□□□ -1.55
CCDC140Q96MF4 KLF7-201ENST00000309446 8362 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
CCDC140Q96MF4 MYO3B-203ENST00000409044 5448 ntAPPRIS ALT2 TSL 1 (best) BASIC5.34□□□□□ -1.56
CCDC140Q96MF4 LRRFIP2-201ENST00000336686 3208 ntTSL 1 (best) BASIC5.34□□□□□ -1.56
CCDC140Q96MF4 MAPK10-365ENST00000641902 3825 ntBASIC5.34□□□□□ -1.56
CCDC140Q96MF4 AC011416.1-201ENST00000514947 1732 ntBASIC5.34□□□□□ -1.56
CCDC140Q96MF4 DPYD-202ENST00000370192 4412 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.56
CCDC140Q96MF4 OR5AN1-202ENST00000641850 8468 ntAPPRIS P1 BASIC5.34□□□□□ -1.56
CCDC140Q96MF4 SETDB1-205ENST00000368969 4370 ntAPPRIS P3 TSL 1 (best) BASIC5.34□□□□□ -1.56
CCDC140Q96MF4 SLC22A25-201ENST00000306494 1692 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.56
CCDC140Q96MF4 ADAM5-201ENST00000359790 1663 ntTSL 1 (best) BASIC5.34□□□□□ -1.56
CCDC140Q96MF4 TTTY10-202ENST00000455084 1628 ntTSL 1 (best) BASIC5.34□□□□□ -1.56
CCDC140Q96MF4 IPCEF1-201ENST00000265198 6689 ntAPPRIS P3 TSL 1 (best) BASIC5.33□□□□□ -1.56
CCDC140Q96MF4 KYNU-203ENST00000409512 1576 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
CCDC140Q96MF4 AC091305.2-201ENST00000624049 1576 ntBASIC5.33□□□□□ -1.56
CCDC140Q96MF4 GRIA2-204ENST00000393815 5260 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
CCDC140Q96MF4 AF131216.1-201ENST00000498997 5856 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
CCDC140Q96MF4 MAPK10-383ENST00000642032 3390 ntBASIC5.33□□□□□ -1.56
CCDC140Q96MF4 PSG2-202ENST00000406487 1538 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
CCDC140Q96MF4 AFTPH-205ENST00000422803 1525 ntTSL 5 BASIC5.33□□□□□ -1.56
CCDC140Q96MF4 ENTPD1-205ENST00000453258 5044 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
CCDC140Q96MF4 ZNF559-212ENST00000592896 1488 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
CCDC140Q96MF4 ZNF711-202ENST00000360700 4844 ntAPPRIS ALT2 TSL 1 (best) BASIC5.33□□□□□ -1.56
CCDC140Q96MF4 IFT80-225ENST00000496589 3073 ntTSL 2 BASIC5.33□□□□□ -1.56
CCDC140Q96MF4 CSMD2-206ENST00000373388 13118 ntAPPRIS P3 TSL 1 (best) BASIC5.33□□□□□ -1.56
CCDC140Q96MF4 HSPA8P18-201ENST00000439846 1928 ntBASIC5.33□□□□□ -1.56
CCDC140Q96MF4 MAK-202ENST00000354489 3941 ntTSL 5 BASIC5.33□□□□□ -1.56
CCDC140Q96MF4 RRS1-AS1-201ENST00000499642 4366 ntTSL 2 BASIC5.33□□□□□ -1.56
CCDC140Q96MF4 CEP112-204ENST00000537949 2847 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
CCDC140Q96MF4 SPAG11B-201ENST00000297498 795 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
CCDC140Q96MF4 OR51F2-201ENST00000322110 993 ntAPPRIS ALT2 BASIC5.33□□□□□ -1.56
CCDC140Q96MF4 RPL7-201ENST00000352983 1101 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
CCDC140Q96MF4 RNU4-2-201ENST00000365668 141 ntBASIC5.33□□□□□ -1.56
CCDC140Q96MF4 AC074375.1-201ENST00000372993 192 ntBASIC5.33□□□□□ -1.56
CCDC140Q96MF4 MIR640-201ENST00000385086 96 ntBASIC5.33□□□□□ -1.56
CCDC140Q96MF4 RNU1-56P-201ENST00000391303 164 ntBASIC5.33□□□□□ -1.56
CCDC140Q96MF4 RNU2-8P-201ENST00000410727 190 ntBASIC5.33□□□□□ -1.56
CCDC140Q96MF4 RNU6-603P-201ENST00000411403 107 ntBASIC5.33□□□□□ -1.56
CCDC140Q96MF4 AC078974.1-201ENST00000411597 223 ntBASIC5.33□□□□□ -1.56
CCDC140Q96MF4 NPM1P40-201ENST00000412758 733 ntBASIC5.33□□□□□ -1.56
CCDC140Q96MF4 FLJ27354-201ENST00000415584 788 ntTSL 2 BASIC5.33□□□□□ -1.56
CCDC140Q96MF4 AL161742.1-201ENST00000418154 584 ntBASIC5.33□□□□□ -1.56
CCDC140Q96MF4 RPL31P45-201ENST00000419532 356 ntBASIC5.33□□□□□ -1.56
CCDC140Q96MF4 OR10T1P-201ENST00000424327 947 ntBASIC5.33□□□□□ -1.56
CCDC140Q96MF4 NPIPB5-205ENST00000424340 3801 ntAPPRIS P2 TSL 1 (best) BASIC5.33□□□□□ -1.56
CCDC140Q96MF4 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC5.33□□□□□ -1.56
CCDC140Q96MF4 AL590666.1-201ENST00000428641 433 ntTSL 2 BASIC5.33□□□□□ -1.56
CCDC140Q96MF4 LINC01754-201ENST00000437920 750 ntTSL 3 BASIC5.33□□□□□ -1.56
CCDC140Q96MF4 AC024908.1-202ENST00000441907 764 ntTSL 2 BASIC5.33□□□□□ -1.56
CCDC140Q96MF4 AC004980.3-201ENST00000447046 365 ntBASIC5.33□□□□□ -1.56
CCDC140Q96MF4 EEF1A1P1-201ENST00000447052 739 ntBASIC5.33□□□□□ -1.56
CCDC140Q96MF4 AC132479.1-201ENST00000449160 144 ntBASIC5.33□□□□□ -1.56
CCDC140Q96MF4 AC239809.1-201ENST00000450470 217 ntBASIC5.33□□□□□ -1.56
CCDC140Q96MF4 AC104073.1-201ENST00000451988 151 ntBASIC5.33□□□□□ -1.56
CCDC140Q96MF4 HMGB1P15-201ENST00000453854 435 ntBASIC5.33□□□□□ -1.56
CCDC140Q96MF4 AC092675.1-203ENST00000454230 538 ntTSL 5 BASIC5.33□□□□□ -1.56
CCDC140Q96MF4 OR7E7P-201ENST00000455678 1012 ntBASIC5.33□□□□□ -1.56
CCDC140Q96MF4 UOX-201ENST00000471089 899 ntBASIC5.33□□□□□ -1.56
CCDC140Q96MF4 RPL35P6-201ENST00000490024 372 ntBASIC5.33□□□□□ -1.56
CCDC140Q96MF4 AC114967.1-201ENST00000504890 259 ntBASIC5.33□□□□□ -1.56
CCDC140Q96MF4 AC116345.3-201ENST00000508255 449 ntTSL 3 BASIC5.33□□□□□ -1.56
CCDC140Q96MF4 EGFLAM-AS2-201ENST00000512603 466 ntTSL 5 BASIC5.33□□□□□ -1.56
CCDC140Q96MF4 LINC02492-204ENST00000515660 584 ntTSL 2 BASIC5.33□□□□□ -1.56
CCDC140Q96MF4 Y_RNA.693-201ENST00000516641 110 ntBASIC5.33□□□□□ -1.56
CCDC140Q96MF4 IGLC4-201ENST00000517690 248 ntBASIC5.33□□□□□ -1.56
CCDC140Q96MF4 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC5.33□□□□□ -1.56
CCDC140Q96MF4 IGHVII-51-2-201ENST00000519778 259 ntBASIC5.33□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 109.9 ms